| Label | Region | Length (bp) | Pi | Alignment reliability | MarkerSeek score | Primer available | Action |
|---|---|---|---|---|---|---|---|
| rps16-trnQ-UUG | LSC | 1444 | 0.0061 | 1.00 | 65.3 | yes | View details |
| rpoB-trnC-GCA | LSC | 1209 | 0.0051 | 1.00 | 65.0 | yes | View details |
| trnT-GGU-psbD | LSC | 1419 | 0.0069 | 1.00 | 56.1 | yes | View details |
| petA-psbJ | LSC | 1004 | 0.0067 | 0.99 | 56.6 | yes | View details |
| petD | LSC | 1245 | 0.0048 | 1.00 | 53.1 | yes | View details |
| rpl22 | LSC | 495 | 0.0036 | 1.00 | 39.6 | yes | View details |
| ndhF-rpl32 | SSC | 1130 | 0.0081 | 0.99 | 60.0 | yes | View details |
| rpl32-trnL-UAG | SSC | 915 | 0.0070 | 1.00 | 62.5 | yes | View details |
| ycf1 | SSC | 5481 | 0.0046 | 1.00 | 51.8 | yes | View details |
| rpl22-rps19 | LSC | 78 | 0.0432 | 0.95 | 72.2 | yes | View details |
| psbT-psbN | LSC | 61 | 0.0343 | 1.00 | 70.6 | yes | View details |
| ycf3-trnS-GGA | LSC | 907 | 0.0059 | 0.99 | 68.8 | yes | View details |
| atpH-atpI | LSC | 1171 | 0.0045 | 1.00 | 67.3 | yes | View details |
| trnK-UUU-rps16 | LSC | 756 | 0.0050 | 1.00 | 65.4 | yes | View details |
| trnS-GCU-trnG-UCC | LSC | 558 | 0.0054 | 1.00 | 64.9 | yes | View details |
| psbE-petL | LSC | 1165 | 0.0038 | 0.98 | 64.9 | yes | View details |
| trnH-GUG-psbA | LSC | 187 | 0.0109 | 1.00 | 64.8 | yes | View details |
| ycf4-cemA | LSC | 700 | 0.0045 | 1.00 | 64.2 | yes | View details |
| trnT-UGU-trnL-UAA | LSC | 800 | 0.0044 | 1.00 | 62.4 | yes | View details |
| Candidate markers include all hotspot labels marked in the diversity plot, listed in genomic order, plus the top 10 remaining regions by MarkerSeek score. Primer design is attempted for every listed region. Primer available: yes means at least one valid primer pair was found; no means no valid pair passed screening; NA means primer design was skipped. | |||||||
Species
34
Genome length
165–167 kb
Candidate markers
272
Primer pairs
95
Genome-wide nucleotide diversity
Candidate markers
9 hotspot labels from the diversity plot in genomic order, plus the top 10 remaining regions by MarkerSeek score (out of 272 candidates).
Primer pairs
Showing the top 30 of 95 primer pairs (ranked by primer score).
| Primer ID | Label | Forward | Reverse | Amplicon (bp) | Cross-species rate | Score |
|---|---|---|---|---|---|---|
| trnH-GUG-psbA_p1 | trnH-GUG-psbA | GATCCACTTGGCTACATCCG |
GCGCTAACCTTGGTATGGAA |
293–326 | 1.000 | 86.6 |
| trnH-GUG-psbA_p2 | trnH-GUG-psbA | AATCCACTGCCTTGATCCAC |
GCGCTAACCTTGGTATGGAA |
306–339 | 1.000 | 86.3 |
| trnH-GUG-psbA_p3 | trnH-GUG-psbA | CAATCCACTGCCTTGATCCA |
GCGCTAACCTTGGTATGGAA |
307–340 | 1.000 | 86.2 |
| trnH-GUG-psbA_p4 | trnH-GUG-psbA | ACAATCCACTGCCTTGATCC |
GCGCTAACCTTGGTATGGAA |
308–341 | 1.000 | 86.2 |
| trnH-GUG-psbA_p5 | trnH-GUG-psbA | GATCCACTTGGCTACATCCG |
ATCGCGCTAACCTTGGTATG |
296–329 | 1.000 | 85.7 |
| trnK-UUU-rps16_p1 | trnK-UUU-rps16 | TCCCTCGCTTCATCCAAATG |
AGGAACTGTTCGGGATCTTT |
864–906 | 1.000 | 73.3 |
| trnK-UUU-rps16_p2 | trnK-UUU-rps16 | CCGATGGTATGGACGAATCC |
AGGAACTGTTCGGGATCTTT |
881–923 | 1.000 | 72.9 |
| trnK-UUU-rps16_p3 | trnK-UUU-rps16 | CGATGGTATGGACGAATCCC |
AGGAACTGTTCGGGATCTTT |
880–922 | 1.000 | 72.9 |
| trnK-UUU-rps16_p4 | trnK-UUU-rps16 | AAAGCCGAGTACTCTACCGT |
AGGAACTGTTCGGGATCTTT |
820–862 | 1.000 | 72.7 |
| trnK-UUU-rps16_p5 | trnK-UUU-rps16 | AAGCCGAGTACTCTACCGTT |
AGGAACTGTTCGGGATCTTT |
819–861 | 1.000 | 72.7 |
| rps16-trnQ-UUG_p1 | rps16-trnQ-UUG | TGCTTTCTACCACAGCGTTT |
AAATATAGATGGGGCGTGGC |
1515–1588 | 1.000 | 86.5 |
| rps16-trnQ-UUG_p2 | rps16-trnQ-UUG | TTGCTTTCTACCACAGCGTT |
AAATATAGATGGGGCGTGGC |
1516–1589 | 1.000 | 86.5 |
| rps16-trnQ-UUG_p3 | rps16-trnQ-UUG | AAGTCGCACGTTGCTTTCTA |
AAATATAGATGGGGCGTGGC |
1526–1599 | 1.000 | 85.7 |
| rps16-trnQ-UUG_p4 | rps16-trnQ-UUG | CGGATCGTGTCCTTCAAGTC |
AAATATAGATGGGGCGTGGC |
1541–1614 | 1.000 | 83.8 |
| rps16-trnQ-UUG_p5 | rps16-trnQ-UUG | GGATCGTGTCCTTCAAGTCG |
AAATATAGATGGGGCGTGGC |
1540–1613 | 1.000 | 83.8 |
| trnS-GCU-trnG-UCC_p1 | trnS-GCU-trnG-UCC | ATTAGCAATCCGCCGCTTTA |
GGGGGTTACTCGAACGAATC |
632–667 | 1.000 | 87.6 |
| trnS-GCU-trnG-UCC_p2 | trnS-GCU-trnG-UCC | ACGGAAAGAGAGGGATTCGA |
GGGGGTTACTCGAACGAATC |
681–716 | 1.000 | 86.4 |
| trnS-GCU-trnG-UCC_p3 | trnS-GCU-trnG-UCC | ATTAGCAATCCGCCGCTTTA |
AGGGGGTTACTCGAACGAAT |
633–668 | 1.000 | 84.7 |
| trnS-GCU-trnG-UCC_p4 | trnS-GCU-trnG-UCC | GCTTTAGTCCACTCAGCCAT |
GGGGGTTACTCGAACGAATC |
618–653 | 1.000 | 84.7 |
| trnS-GCU-trnG-UCC_p5 | trnS-GCU-trnG-UCC | AGTCCACTCAGCCATCTCTC |
GGGGGTTACTCGAACGAATC |
613–648 | 1.000 | 83.9 |
| atpH-atpI_p1 | atpH-atpI | ATAACGGAAGCGGCAGAAAT |
ATAGGGGAATCCATGGAGGG |
1045–1255 | 1.000 | 87.2 |
| atpH-atpI_p2 | atpH-atpI | TACCTTGACCAACTCCAGGT |
ATAGGGGAATCCATGGAGGG |
1101–1311 | 1.000 | 86.4 |
| atpH-atpI_p3 | atpH-atpI | AGCCAATCCAGCAGCAATAA |
ATAGGGGAATCCATGGAGGG |
1061–1271 | 1.000 | 86.3 |
| atpH-atpI_p4 | atpH-atpI | AATAACGGAAGCGGCAGAAA |
ATAGGGGAATCCATGGAGGG |
1046–1256 | 1.000 | 86.0 |
| atpH-atpI_p5 | atpH-atpI | GCAGTACCTTGACCAACTCC |
ATAGGGGAATCCATGGAGGG |
1105–1315 | 1.000 | 85.8 |
| rpoB-trnC-GCA_p1 | rpoB-trnC-GCA | TCCCTCATTTCCATCTCGGA |
CTTACCACTCGGCCATATCG |
1235–1344 | 1.000 | 85.5 |
| rpoB-trnC-GCA_p2 | rpoB-trnC-GCA | TCCCTCATTTCCATCTCGGA |
CCGGATTTGAACTGGGGAAA |
1275–1384 | 1.000 | 85.2 |
| rpoB-trnC-GCA_p3 | rpoB-trnC-GCA | GTCAAGCCGTGATCCATGAA |
CTTACCACTCGGCCATATCG |
1306–1415 | 1.000 | 84.5 |
| rpoB-trnC-GCA_p4 | rpoB-trnC-GCA | TCAAGCCGTGATCCATGAAC |
CTTACCACTCGGCCATATCG |
1305–1414 | 1.000 | 84.5 |
| rpoB-trnC-GCA_p5 | rpoB-trnC-GCA | TCAAGCCGTGATCCATGAAC |
CCGGATTTGAACTGGGGAAA |
1345–1454 | 1.000 | 84.2 |
Result downloads
Reference species (34)
One GenBank record per species. Use the NCBI button to open the Nucleotide entry for the listed accession.
| Species | Accession | Length (bp) | Link |
|---|---|---|---|
| Ferula akitschkensis | NC_071166.1 | 166404 | View on NCBI ↗ |
| Ferula bungeana | NC_067786.1 | 166208 | View on NCBI ↗ |
| Ferula canescens | NC_071171.1 | 165135 | View on NCBI ↗ |
| Ferula communis | PP693041.1 | 166696 | View on NCBI ↗ |
| Ferula dissecta | NC_071174.1 | 166461 | View on NCBI ↗ |
| Ferula diversifolia | PQ468415.1 | 166576 | View on NCBI ↗ |
| Ferula equisetacea | NC_067556.1 | 165607 | View on NCBI ↗ |
| Ferula fedtschenkoana | NC_067563.1 | 166445 | View on NCBI ↗ |
| Ferula feruloides | NC_071167.1 | 166436 | View on NCBI ↗ |
| Ferula foetidissima | PQ468413.1 | 166474 | View on NCBI ↗ |
| Ferula gigantea | NC_067562.1 | 166222 | View on NCBI ↗ |
| Ferula gracilis | NC_071169.1 | 166522 | View on NCBI ↗ |
| Ferula hexiensis | NC_071175.1 | 166378 | View on NCBI ↗ |
| Ferula karatavica | PP314220.1 | 166251 | View on NCBI ↗ |
| Ferula kelifi | NC_067564.1 | 166712 | View on NCBI ↗ |
| Ferula kirialovii | NC_071178.1 | 166068 | View on NCBI ↗ |
| Ferula lehmannii | NC_071170.1 | 166542 | View on NCBI ↗ |
| Ferula leiophylla | NC_071164.1 | 166492 | View on NCBI ↗ |
| Ferula licentiana | NC_071173.1 | 166642 | View on NCBI ↗ |
| Ferula litwinowiana | NC_067565.1 | 166554 | View on NCBI ↗ |
| Ferula meyeri | OP324738.1 | 166651 | View on NCBI ↗ |
| Ferula namanganica | PP336431.1 | 166486 | View on NCBI ↗ |
| Ferula olivacea | NC_067566.1 | 167013 | View on NCBI ↗ |
| Ferula oopoda | NC_067567.1 | 166565 | View on NCBI ↗ |
| Ferula ovina | NC_067558.1 | 166450 | View on NCBI ↗ |
| Ferula penninervis | PP314219.1 | 166227 | View on NCBI ↗ |
| Ferula prangifolia | PP314218.1 | 166429 | View on NCBI ↗ |
| Ferula renardii | NC_067568.1 | 166520 | View on NCBI ↗ |
| Ferula sibirica | NC_067560.1 | 166648 | View on NCBI ↗ |
| Ferula songarica | NC_071168.1 | 166437 | View on NCBI ↗ |
| Ferula syreitschikowii | NC_071177.1 | 166590 | View on NCBI ↗ |
| Ferula teterrima | NC_071165.1 | 166489 | View on NCBI ↗ |
| Ferula transiliensis | NC_067561.1 | 166547 | View on NCBI ↗ |
| Ferula tschimganica | PP314217.1 | 166517 | View on NCBI ↗ |