| Label | Region | Length (bp) | Pi | Alignment reliability | MarkerSeek score | Primer available | Action |
|---|---|---|---|---|---|---|---|
| accD | LSC | 1593 | 0.0142 | 0.95 | 62.4 | yes | View details |
| ycf1 | IRb | 472 | 0.0026 | 1.00 | 37.4 | no | View details |
| ndhF-rpl32 | SSC | 1050 | 0.0195 | 1.00 | 75.9 | yes | View details |
| rpl32-trnL | SSC | 830 | 0.0204 | 0.99 | 66.8 | yes | View details |
| ycf1 | SSC | 5202 | 0.0221 | 0.97 | 65.6 | yes | View details |
| trnK-UUU-rps16 | LSC | 814 | 0.0169 | 0.99 | 82.4 | yes | View details |
| ycf3-trnS | LSC | 885 | 0.0138 | 1.00 | 77.1 | yes | View details |
| trnF-ndhJ | LSC | 646 | 0.0132 | 1.00 | 72.1 | yes | View details |
| trnE-UUC-rpoB | LSC | 931 | 0.0136 | 0.97 | 71.7 | yes | View details |
| trnC-GCA-petN | LSC | 809 | 0.0174 | 0.99 | 70.4 | yes | View details |
| psbM-trnD-GUC | LSC | 665 | 0.0108 | 0.99 | 67.3 | yes | View details |
| rps18-rpl20 | LSC | 248 | 0.0158 | 1.00 | 67.1 | yes | View details |
| ndhC-trnV-UAC | LSC | 1032 | 0.0130 | 0.99 | 66.8 | yes | View details |
| rps16-trnQ-UUG | LSC | 959 | 0.0130 | 0.99 | 66.2 | yes | View details |
| trnM-atpE | LSC | 212 | 0.0167 | 0.97 | 66.1 | yes | View details |
| Candidate markers include all hotspot labels marked in the diversity plot, listed in genomic order, plus the top 10 remaining regions by MarkerSeek score. Primer design is attempted for every listed region. Primer available: yes means at least one valid primer pair was found; no means no valid pair passed screening; NA means primer design was skipped. | |||||||
Species
36
Genome length
152–153 kb
Candidate markers
272
Primer pairs
70
Genome-wide nucleotide diversity
Candidate markers
5 hotspot labels from the diversity plot in genomic order, plus the top 10 remaining regions by MarkerSeek score (out of 272 candidates).
Primer pairs
Showing the top 30 of 70 primer pairs (ranked by primer score).
| Primer ID | Label | Forward | Reverse | Amplicon (bp) | Cross-species rate | Score |
|---|---|---|---|---|---|---|
| trnK-UUU-rps16_p1 | trnK-UUU-rps16 | GGTATGGATGAATCCCTCGC |
TTCCTTGAAAAAGGCGCTCA |
975–1042 | 1.000 | 88.3 |
| trnK-UUU-rps16_p2 | trnK-UUU-rps16 | AAAGCCGAGTACTCTACCGT |
TTCCTTGAAAAAGGCGCTCA |
920–987 | 1.000 | 88.0 |
| trnK-UUU-rps16_p3 | trnK-UUU-rps16 | AAGCCGAGTACTCTACCGTT |
TTCCTTGAAAAAGGCGCTCA |
919–986 | 1.000 | 88.0 |
| trnK-UUU-rps16_p4 | trnK-UUU-rps16 | TCAGTCGTGGTCTTCCAAAC |
TTCCTTGAAAAAGGCGCTCA |
1004–1071 | 1.000 | 87.0 |
| trnK-UUU-rps16_p5 | trnK-UUU-rps16 | CAGTCGTGGTCTTCCAAACT |
TTCCTTGAAAAAGGCGCTCA |
1003–1070 | 1.000 | 87.0 |
| rps16-trnQ-UUG_p1 | rps16-trnQ-UUG | AAGTCGCACGTTGCTTTCTA |
GAGGTTCGAATCCTTCCGTC |
1011–1046 | 1.000 | 89.9 |
| rps16-trnQ-UUG_p2 | rps16-trnQ-UUG | AAGTCGCACGTTGCTTTCTA |
TTCGGAGGTTCGAATCCTTC |
1015–1050 | 1.000 | 85.1 |
| rps16-trnQ-UUG_p3 | rps16-trnQ-UUG | AAGTCGCACGTTGCTTTCTA |
TAAGGCAACGGGTTTTGGTC |
1041–1076 | 1.000 | 84.8 |
| rps16-trnQ-UUG_p4 | rps16-trnQ-UUG | CGTTGCTTTCTACCACATCG |
GAGGTTCGAATCCTTCCGTC |
1003–1038 | 1.000 | 84.8 |
| rps16-trnQ-UUG_p5 | rps16-trnQ-UUG | AGTCGCACGTTGCTTTCTAC |
GAGGTTCGAATCCTTCCGTC |
1010–1045 | 1.000 | 84.1 |
| trnC-GCA-petN_p1 | trnC-GCA-petN | TTTCCCCAGTTCAAATCCGG |
AGCCCAAGCGAGACTTACTA |
863–893 | 1.000 | 89.0 |
| trnC-GCA-petN_p2 | trnC-GCA-petN | GGGGGACTGCAAATCCTTTT |
AGCCCAAGCGAGACTTACTA |
881–911 | 1.000 | 86.7 |
| trnC-GCA-petN_p3 | trnC-GCA-petN | TTTCCCCAGTTCAAATCCGG |
GCCCAAGCGAGACTTACTAT |
862–892 | 1.000 | 83.0 |
| trnC-GCA-petN_p4 | trnC-GCA-petN | TTTCCCCAGTTCAAATCCGG |
ATTAAAGCAGCCCAAGCGAG |
871–901 | 1.000 | 82.9 |
| trnC-GCA-petN_p5 | trnC-GCA-petN | TTTCCCCAGTTCAAATCCGG |
GACTACCATTAAAGCAGCCCA |
878–908 | 1.000 | 82.1 |
| psbM-trnD-GUC_p1 | psbM-trnD-GUC | GGAACTAAAATGAACAGTGCAGT |
TTCAATAGGCAAGAGCACCG |
764–789 | 1.000 | 61.1 |
| psbM-trnD-GUC_p2 | psbM-trnD-GUC | AAAATGAACAGTGCAGTAGC |
TTCAATAGGCAAGAGCACCG |
758–783 | 1.000 | 60.7 |
| psbM-trnD-GUC_p3 | psbM-trnD-GUC | ACTAAAATGAACAGTGCAGTAGC |
TTCAATAGGCAAGAGCACCG |
761–786 | 1.000 | 59.7 |
| psbM-trnD-GUC_p4 | psbM-trnD-GUC | AGGAACTAAAATGAACAGTGCAG |
TTCAATAGGCAAGAGCACCG |
765–790 | 1.000 | 59.0 |
| psbM-trnD-GUC_p5 | psbM-trnD-GUC | AGGAACTAAAATGAACAGTGCA |
TTCAATAGGCAAGAGCACCG |
765–790 | 1.000 | 58.2 |
| trnE-UUC-rpoB_p1 | trnE-UUC-rpoB | GGGACTTGAACCCTCGTTTT |
AGTTCTTCTGTCAAACCCTGA |
1023–1073 | 1.000 | 72.5 |
| trnE-UUC-rpoB_p2 | trnE-UUC-rpoB | TAACCACTGGACCATAGGGG |
AGTTCTTCTGTCAAACCCTGA |
982–1032 | 1.000 | 72.0 |
| trnE-UUC-rpoB_p3 | trnE-UUC-rpoB | CCCTCGTTTTCTCCGTGAAA |
AGTTCTTCTGTCAAACCCTGA |
1013–1063 | 1.000 | 71.7 |
| trnE-UUC-rpoB_p4 | trnE-UUC-rpoB | TTGAACCCTCGTTTTCTCCG |
AGTTCTTCTGTCAAACCCTGA |
1018–1068 | 1.000 | 71.7 |
| trnE-UUC-rpoB_p5 | trnE-UUC-rpoB | GGGACTTGAACCCTCGTTTT |
TCAAACCCTGATCAATGAACCT |
1013–1063 | 1.000 | 71.1 |
| ycf3-trnS_p1 | ycf3-trnS | CATTTATCCGCGATCTAGGCA |
TTCCAATGCTACGCCTTCAA |
635–995 | 1.000 | 81.3 |
| ycf3-trnS_p2 | ycf3-trnS | CATTTATCCGCGATCTAGGCA |
GGATTCGAACCCTCGGTAAG |
673–1033 | 1.000 | 80.8 |
| ycf3-trnS_p3 | ycf3-trnS | CATTTATCCGCGATCTAGGCA |
AGTTCCAATGCTACGCCTTC |
637–997 | 1.000 | 80.8 |
| ycf3-trnS_p4 | ycf3-trnS | CATTTATCCGCGATCTAGGCA |
AGGTGAAGGTACGGAAAGGA |
1010–1045 | 0.222 | 40.6 |
| ycf3-trnS_p5 | ycf3-trnS | CATTTATCCGCGATCTAGGCA |
ACGGAAAGGAAAGAGAGGGA |
1000–1035 | 0.222 | 40.6 |
Result downloads
Reference species (36)
One GenBank record per species. Use the NCBI button to open the Nucleotide entry for the listed accession.
| Species | Accession | Length (bp) | Link |
|---|---|---|---|
| Lactuca aculeata | NC_066729.1 | 152764 | View on NCBI ↗ |
| Lactuca adenophora | NC_066730.1 | 152366 | View on NCBI ↗ |
| Lactuca altaica | NC_066731.1 | 152760 | View on NCBI ↗ |
| Lactuca biennis | NC_066732.1 | 152603 | View on NCBI ↗ |
| Lactuca boissieri | NC_066733.1 | 152381 | View on NCBI ↗ |
| Lactuca bourgaei | NC_066734.1 | 152450 | View on NCBI ↗ |
| Lactuca brachyrrhyncha | NC_066735.1 | 152641 | View on NCBI ↗ |
| Lactuca canadensis | NC_066736.1 | 152583 | View on NCBI ↗ |
| Lactuca crambifolia | NC_066737.1 | 152599 | View on NCBI ↗ |
| Lactuca dolichophylla | NC_066738.1 | 152076 | View on NCBI ↗ |
| Lactuca floridana | NC_066739.1 | 152324 | View on NCBI ↗ |
| Lactuca formosana | NC_066740.1 | 152773 | View on NCBI ↗ |
| Lactuca georgica | NC_066741.1 | 152731 | View on NCBI ↗ |
| Lactuca glareosa | NC_066742.1 | 152370 | View on NCBI ↗ |
| Lactuca glauciifolia | NC_066743.1 | 152547 | View on NCBI ↗ |
| Lactuca graminifolia | NC_066744.1 | 152641 | View on NCBI ↗ |
| Lactuca indica | NC_066745.1 | 152767 | View on NCBI ↗ |
| Lactuca inermis | NC_066746.1 | 152269 | View on NCBI ↗ |
| Lactuca lasiorhiza | NC_066747.1 | 152746 | View on NCBI ↗ |
| Lactuca ludoviciana | NC_066748.1 | 152626 | View on NCBI ↗ |
| Lactuca oblongifolia | NC_066749.1 | 152561 | View on NCBI ↗ |
| Lactuca palmensis | NC_066750.1 | 152510 | View on NCBI ↗ |
| Lactuca perennis | NC_066752.1 | 152374 | View on NCBI ↗ |
| Lactuca picridiformis | NC_066753.1 | 152679 | View on NCBI ↗ |
| Lactuca plumieri | NC_066754.1 | 152274 | View on NCBI ↗ |
| Lactuca quercina | NC_066755.1 | 152676 | View on NCBI ↗ |
| Lactuca saligna | NC_066756.1 | 152807 | View on NCBI ↗ |
| Lactuca sativa | NC_007578.1 | 152765 | View on NCBI ↗ |
| Lactuca scarioloides | NC_066757.1 | 152684 | View on NCBI ↗ |
| Lactuca serriola | NC_066758.1 | 152730 | View on NCBI ↗ |
| Lactuca sibirica | NC_066760.1 | 152586 | View on NCBI ↗ |
| Lactuca tenerrima | NC_066761.1 | 152621 | View on NCBI ↗ |
| Lactuca tetrantha | NC_066762.1 | 152656 | View on NCBI ↗ |
| Lactuca triangulata | NC_066763.1 | 152633 | View on NCBI ↗ |
| Lactuca undulata | NC_066764.1 | 152340 | View on NCBI ↗ |
| Lactuca virosa | NC_066765.1 | 152497 | View on NCBI ↗ |