feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score psbA gene psbA psbA 194 1255 -1 1062 LSC 0.010358 11 0 27 5 no 1.000000 2 1.000000 NA 1.000000 50.100000 IGS_001 igs psbA|trnK-UUU psbA-trnK-UUU 1256 1579 0 324 LSC 0.132075 42 6 300 45 no 1.000000 2 1.000000 NA 0.981481 78.200000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1580 1614 -1 35 LSC 0.000000 0 0 3 10 no 0.000000 1 0.000000 NA 1.000000 19.000000 matK gene matK matK 1884 3413 -1 1530 LSC 0.063774 97 9 0 54 no 1.000000 2 1.000000 NA 0.994118 74.700000 IGS_004 igs matK|trnK-UUU matK-trnK-UUU 3414 4320 0 907 LSC 0.077465 55 197 6 37 no 1.000000 2 1.000000 NA 0.782800 74.400000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 4321 4357 -1 37 LSC 0.000000 0 0 40 0 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_005 igs trnK-UUU|trnQ-UUG trnK-UUU-trnQ-UUG 4358 5320 0 963 LSC 0.156502 136 94 77 75 yes 1.000000 2 1.000000 NA 0.902388 87.900000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 5321 5392 -1 72 LSC 0.000000 0 0 14 3 no 0.000000 1 0.000000 NA 1.000000 19.000000 IGS_006 igs trnQ-UUG|psbK trnQ-UUG-psbK 5393 5766 0 374 LSC 0.083095 29 25 86 23 no 1.000000 2 1.000000 NA 0.933155 77.300000 psbK gene psbK psbK 5767 5952 1 186 LSC 0.026882 5 0 12 0 no 1.000000 2 1.000000 NA 1.000000 53.000000 IGS_007 igs psbK|psbI psbK-psbI 5953 6489 0 537 LSC 0.092742 46 41 85 65 yes 1.000000 2 1.000000 NA 0.923650 84.600000 psbI gene psbI psbI 6490 6600 1 111 LSC 0.027027 3 0 21 12 no 1.000000 2 1.000000 NA 1.000000 53.900000 IGS_008 igs psbI|trnS-GCU psbI-trnS-GCU 6601 6724 0 124 LSC 0.089431 11 1 15 36 no 1.000000 2 1.000000 NA 0.991935 73.000000 trnS-GCU tRNA trnS-GCU trnS-GCU 6725 6812 -1 88 LSC 0.022727 2 0 30 1 no 1.000000 2 1.000000 NA 1.000000 50.600000 IGS_009 igs trnS-GCU|trnG-UCC trnS-GCU-trnG-UCC 6813 9002 0 2190 LSC 0.130859 201 654 49 18 no 1.000000 2 1.000000 NA 0.701370 75.500000 trnG-UCC_part1 tRNA trnG-UCC trnG-UCC 9003 9040 1 38 LSC 0.026316 1 0 11 107 no 1.000000 2 1.000000 NA 1.000000 53.500000 trnG-UCC_part2 tRNA trnG-UCC trnG-UCC 9098 9135 1 38 LSC 0.000000 0 0 76 12 no 0.000000 1 0.000000 NA 1.000000 19.700000 IGS_012 igs trnG-UCC|trnR-UCU trnG-UCC-trnR-UCU 9136 9273 0 138 LSC 0.111111 15 3 114 74 no 1.000000 2 1.000000 NA 0.978261 80.200000 trnR-UCU tRNA trnR-UCU trnR-UCU 9274 9345 1 72 LSC 0.000000 0 0 0 2 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_013 igs trnR-UCU|atpA trnR-UCU-atpA 9346 9467 0 122 LSC 0.106557 13 0 72 21 no 1.000000 2 1.000000 NA 1.000000 74.100000 atpA gene atpA atpA 9468 10982 -1 1515 LSC 0.046205 70 0 10 68 no 1.000000 2 1.000000 NA 1.000000 71.000000 IGS_014 igs atpA|atpF atpA-atpF 10983 11080 0 98 LSC 0.061224 6 0 71 5 no 1.000000 2 1.000000 NA 1.000000 68.000000 atpF gene atpF atpF 11081 12581 -1 1501 LSC 0.052203 77 26 1 23 no 1.000000 2 1.000000 NA 0.982678 74.400000 IGS_015 igs atpF|atpH atpF-atpH 12582 13190 0 609 LSC 0.102389 30 316 3 45 no 1.000000 2 1.000000 NA 0.481117 66.100000 atpH gene atpH atpH 13191 13436 -1 246 LSC 0.020325 5 0 39 8 no 1.000000 2 1.000000 NA 1.000000 49.800000 IGS_016 igs atpH|petN atpH-petN 13437 14964 0 1528 LSC 0.128910 136 473 9 10 no 1.000000 2 1.000000 NA 0.690445 75.500000 petN gene petN petN 14965 15054 -1 90 LSC 0.011111 1 0 31 7 no 1.000000 2 1.000000 NA 1.000000 44.400000 IGS_017 igs petN|trnC-GCA petN-trnC-GCA 15055 15522 0 468 LSC 0.099548 44 26 79 78 yes 1.000000 2 1.000000 NA 0.944444 85.800000 trnC-GCA tRNA trnC-GCA trnC-GCA 15523 15593 -1 71 LSC 0.000000 0 0 14 7 no 0.000000 1 0.000000 NA 1.000000 19.300000 IGS_018 igs trnC-GCA|rpoB trnC-GCA-rpoB 15594 16932 0 1339 LSC 0.112840 145 54 85 86 yes 1.000000 2 1.000000 NA 0.959671 89.000000 rpoB gene rpoB rpoB 16933 20163 1 3231 LSC 0.031260 101 0 4 6 no 1.000000 2 1.000000 NA 1.000000 58.500000 IGS_019 igs rpoB|rpoC1 rpoB-rpoC1 20164 20189 0 26 LSC 0.115385 3 0 62 48 no 1.000000 2 1.000000 NA 1.000000 76.100000 rpoC1 gene rpoC1 rpoC1 20190 23101 1 2912 LSC 0.035398 100 87 7 14 no 1.000000 2 1.000000 NA 0.970124 64.400000 IGS_020 igs rpoC1|rpoC2 rpoC1-rpoC2 23102 23304 0 203 LSC 0.088542 17 11 5 116 no 1.000000 2 1.000000 NA 0.945813 75.600000 rpoC2 gene rpoC2 rpoC2 23305 27456 1 4152 LSC 0.052046 215 21 25 2 no 1.000000 2 1.000000 NA 0.994942 68.400000 IGS_021 igs rpoC2|rps2 rpoC2-rps2 27457 27749 0 293 LSC 0.067669 18 27 1 47 no 1.000000 2 1.000000 NA 0.907850 71.400000 rps2 gene rps2 rps2 27750 28457 1 708 LSC 0.026836 19 0 22 15 no 1.000000 2 1.000000 NA 1.000000 60.300000 IGS_022 igs rps2|atpI rps2-atpI 28458 28752 0 295 LSC 0.056738 16 13 5 3 no 1.000000 2 1.000000 NA 0.955932 71.300000 atpI gene atpI atpI 28753 29496 1 744 LSC 0.034946 26 0 18 3 no 1.000000 2 1.000000 NA 1.000000 64.100000 IGS_023 igs atpI|psbM atpI-psbM 29497 30472 0 976 LSC 0.131016 98 228 39 73 no 1.000000 2 1.000000 NA 0.766393 81.400000 psbM gene psbM psbM 30473 30577 -1 105 LSC 0.009524 1 0 7 61 no 1.000000 2 1.000000 NA 1.000000 43.500000 IGS_024 igs psbM|trnD-GUC psbM-trnD-GUC 30578 31513 0 936 LSC 0.109497 98 41 31 5 yes 1.000000 2 1.000000 NA 0.956197 83.400000 trnD-GUC tRNA trnD-GUC trnD-GUC 31514 31587 -1 74 LSC 0.013514 1 0 2 0 no 1.000000 2 1.000000 NA 1.000000 45.300000 IGS_025 igs trnD-GUC|rps14 trnD-GUC-rps14 31588 31721 0 134 LSC 0.091603 12 3 68 60 no 1.000000 2 1.000000 NA 0.977612 77.900000 rps14 gene rps14 rps14 31722 32024 -1 303 LSC 0.046205 14 0 3 4 no 1.000000 2 1.000000 NA 1.000000 64.400000 IGS_026 igs rps14|psaB rps14-psaB 32025 32181 0 157 LSC 0.070968 11 2 14 13 no 1.000000 2 1.000000 NA 0.987261 71.000000 psaB gene psaB psaB 32182 34386 -1 2205 LSC 0.024036 53 0 13 181 no 1.000000 2 1.000000 NA 1.000000 57.100000 IGS_027 igs psaB|psaA psaB-psaA 34387 34411 0 25 LSC 0.000000 0 0 249 156 no 0.000000 1 0.000000 NA 1.000000 30.400000 psaA gene psaA psaA 34412 36664 -1 2253 LSC 0.027963 63 0 274 67 no 1.000000 2 1.000000 NA 1.000000 63.300000 IGS_028 igs psaA|ycf3 psaA-ycf3 36665 37190 0 526 LSC 0.050201 25 28 86 7 no 1.000000 2 1.000000 NA 0.946768 75.900000 ycf3 gene ycf3 ycf3 37191 39244 -1 2054 LSC 0.040078 82 8 2 17 no 1.000000 2 1.000000 NA 0.996105 66.100000 IGS_029 igs ycf3|trnS-GGA ycf3-trnS-GGA 39245 39885 0 641 LSC 0.077655 49 10 144 107 yes 1.000000 2 1.000000 NA 0.984399 85.300000 trnS-GGA tRNA trnS-GGA trnS-GGA 39886 39972 1 87 LSC 0.000000 0 0 25 20 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_030 igs trnS-GGA|psbC trnS-GGA-psbC 39973 40322 0 350 LSC 0.132404 38 63 112 12 no 1.000000 2 1.000000 NA 0.820000 75.600000 psbC gene psbC psbC 40323 41744 -1 1422 LSC 0.032349 46 0 3 97 no 1.000000 2 1.000000 NA 1.000000 62.600000 psbD gene psbD psbD 41692 42753 -1 1062 LSC 0.017891 19 0 45 63 no 1.000000 2 1.000000 NA 1.000000 57.400000 IGS_032 igs psbD|psbE psbD-psbE 42754 45193 0 2440 LSC 0.128052 257 433 53 241 yes 1.000000 2 1.000000 NA 0.822541 82.000000 psbE gene psbE psbE 45194 45445 1 252 LSC 0.003968 1 0 35 33 no 1.000000 2 1.000000 NA 1.000000 42.300000 IGS_033 igs psbE|psbF psbE-psbF 45446 45455 0 10 LSC 0.000000 0 0 10 23 no 0.000000 1 0.000000 NA 1.000000 19.500000 psbF gene psbF psbF 45456 45575 1 120 LSC 0.033333 4 0 20 1 no 1.000000 2 1.000000 NA 1.000000 56.700000 IGS_034 igs psbF|psbL psbF-psbL 45576 45597 0 22 LSC 0.090909 2 0 9 89 no 1.000000 2 1.000000 NA 1.000000 72.000000 psbL gene psbL psbL 45598 45714 1 117 LSC 0.008547 1 0 18 2 no 1.000000 2 1.000000 NA 1.000000 42.600000 IGS_035 igs psbL|psbJ psbL-psbJ 45715 45841 0 127 LSC 0.023622 3 0 27 117 no 1.000000 2 1.000000 NA 1.000000 53.100000 psbJ gene psbJ psbJ 45842 45964 1 123 LSC 0.008130 1 0 25 47 no 1.000000 2 1.000000 NA 1.000000 44.000000 IGS_036 igs psbJ|petA psbJ-petA 45965 47117 0 1153 LSC 0.098848 103 111 5 36 no 1.000000 2 1.000000 NA 0.903729 81.300000 petA gene petA petA 47118 48083 -1 966 LSC 0.027950 27 0 17 83 no 1.000000 2 1.000000 NA 1.000000 61.100000 IGS_037 igs petA|cemA petA-cemA 48084 48301 0 218 LSC 0.084507 18 5 38 7 no 1.000000 2 1.000000 NA 0.977064 73.100000 cemA gene cemA cemA 48302 48994 -1 693 LSC 0.076479 53 0 5 3 no 1.000000 2 1.000000 NA 1.000000 76.000000 IGS_038 igs cemA|ycf4 cemA-ycf4 48995 49290 0 296 LSC 0.116732 30 39 1 8 no 1.000000 2 1.000000 NA 0.868243 75.100000 ycf4 gene ycf4 ycf4 49291 49848 -1 558 LSC 0.041219 23 0 3 18 no 1.000000 2 1.000000 NA 1.000000 66.800000 IGS_039 igs ycf4|psaI ycf4-psaI 49849 50311 0 463 LSC 0.086247 37 34 29 15 no 1.000000 2 1.000000 NA 0.926566 78.700000 psaI gene psaI psaI 50312 50422 -1 111 LSC 0.027027 3 0 1 15 no 1.000000 2 1.000000 NA 1.000000 53.100000 IGS_040 igs psaI|trnV-UAC psaI-trnV-UAC 50423 51291 0 869 LSC 0.114247 85 125 50 122 yes 1.000000 2 1.000000 NA 0.856157 84.400000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 51292 51326 -1 35 LSC 0.000000 0 0 10 87 no 0.000000 1 0.000000 NA 1.000000 19.500000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 51922 51959 -1 38 LSC 0.026316 1 0 131 1 no 1.000000 2 1.000000 NA 1.000000 52.700000 IGS_043 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 51960 52175 0 216 LSC 0.101852 22 0 16 99 no 1.000000 2 1.000000 NA 1.000000 73.700000 trnM-CAU tRNA trnM-CAU trnM-CAU 52176 52248 1 73 LSC 0.000000 0 0 5 26 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_044 igs trnM-CAU|atpE trnM-CAU-atpE 52249 52435 0 187 LSC 0.107955 19 11 78 6 no 1.000000 2 1.000000 NA 0.941176 77.500000 atpE gene atpE atpE 52436 52840 -1 405 LSC 0.071605 29 0 1 5 no 1.000000 2 1.000000 NA 1.000000 71.200000 atpB gene atpB atpB 52837 54333 -1 1497 LSC 0.039136 58 15 7 55 no 1.000000 2 1.000000 NA 0.989980 67.700000 IGS_046 igs atpB|rbcL atpB-rbcL 54334 55204 0 871 LSC 0.056471 48 21 9 44 no 1.000000 2 1.000000 NA 0.975890 76.100000 rbcL gene rbcL rbcL 55205 56638 1 1434 LSC 0.051156 73 7 10 0 no 1.000000 2 1.000000 NA 0.995119 73.100000 IGS_047 igs rbcL|psbZ rbcL-psbZ 56639 57267 0 629 LSC 0.088696 51 54 21 50 no 1.000000 2 1.000000 NA 0.914149 81.800000 psbZ gene psbZ psbZ 57268 57456 1 189 LSC 0.031746 6 0 39 4 no 1.000000 2 1.000000 NA 1.000000 56.100000 IGS_048 igs psbZ|trnG-GCC psbZ-trnG-GCC 57457 58028 0 572 LSC 0.131749 61 109 18 76 no 1.000000 2 1.000000 NA 0.809441 80.400000 trnG-GCC tRNA trnG-GCC trnG-GCC 58029 58099 1 71 LSC 0.000000 0 0 22 5 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_049 igs trnG-GCC|trnfM-CAU trnG-GCC-trnfM-CAU 58100 58412 0 313 LSC 0.143836 42 21 93 95 yes 1.000000 2 1.000000 NA 0.932907 84.100000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 58413 58486 -1 74 LSC 0.000000 0 0 3 21 no 0.000000 1 0.000000 NA 1.000000 19.000000 IGS_050 igs trnfM-CAU|trnY-GUA trnfM-CAU-trnY-GUA 58487 58956 0 470 LSC 0.067130 29 38 77 68 no 1.000000 2 1.000000 NA 0.919149 80.300000 trnY-GUA tRNA trnY-GUA trnY-GUA 58957 59040 -1 84 LSC 0.011905 1 0 1 8 no 1.000000 2 1.000000 NA 1.000000 44.400000 IGS_051 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 59041 59115 0 75 LSC 0.120000 9 0 15 82 no 1.000000 2 1.000000 NA 1.000000 73.600000 trnE-UUC tRNA trnE-UUC trnE-UUC 59116 59188 -1 73 LSC 0.000000 0 0 19 9 no 0.000000 1 0.000000 NA 1.000000 19.400000 IGS_052 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 59189 60089 0 901 LSC 0.116395 93 102 92 91 yes 1.000000 2 1.000000 NA 0.886792 88.600000 trnT-GGU tRNA trnT-GGU trnT-GGU 60090 60161 1 72 LSC 0.000000 0 0 4 19 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_053 igs trnT-GGU|trnL-UAA trnT-GGU-trnL-UAA 60162 60756 0 595 LSC 0.106239 63 2 76 4 no 1.000000 2 1.000000 NA 0.996639 79.300000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 60757 60791 1 35 LSC 0.028571 1 0 0 67 no 1.000000 2 1.000000 NA 1.000000 53.900000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 61672 61721 1 50 LSC 0.040000 2 0 28 5 no 1.000000 2 1.000000 NA 1.000000 60.900000 IGS_056 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 61722 61990 0 269 LSC 0.124498 31 20 32 80 no 1.000000 2 1.000000 NA 0.925651 79.100000 trnF-GAA tRNA trnF-GAA trnF-GAA 61991 62063 1 73 LSC 0.000000 0 0 3 7 no 0.000000 1 0.000000 NA 1.000000 19.000000 IGS_057 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 62064 62595 0 532 LSC 0.097222 49 28 76 30 no 1.000000 2 1.000000 NA 0.947368 83.400000 ndhJ gene ndhJ ndhJ 62596 63075 -1 480 LSC 0.025000 12 0 14 15 no 1.000000 2 1.000000 NA 1.000000 56.700000 IGS_058 igs ndhJ|ndhK ndhJ-ndhK 63076 63213 0 138 LSC 0.045802 6 7 32 6 no 1.000000 2 1.000000 NA 0.949275 68.800000 ndhK gene ndhK ndhK 63214 63975 -1 762 LSC 0.044619 34 0 8 47 no 1.000000 2 1.000000 NA 1.000000 70.000000 ndhC gene ndhC ndhC 63945 64307 -1 363 LSC 0.027548 10 0 92 4 no 1.000000 2 1.000000 NA 1.000000 55.000000 IGS_060 igs ndhC|accD ndhC-accD 64308 65403 0 1096 LSC 0.123021 101 275 14 1 no 1.000000 2 1.000000 NA 0.749088 77.000000 accD gene accD accD 65404 67575 -1 2172 LSC 0.239683 453 282 0 5 yes 1.000000 2 1.000000 NA 0.870166 79.900000 IGS_061 igs accD|trnS-UGA accD-trnS-UGA 67576 68475 0 900 LSC 0.291275 217 155 5 50 no 1.000000 2 1.000000 NA 0.827778 80.500000 trnS-UGA tRNA trnS-UGA trnS-UGA 68476 68563 1 88 LSC 0.034091 3 0 12 2 no 1.000000 2 1.000000 NA 1.000000 57.300000 IGS_062 igs trnS-UGA|rps4 trnS-UGA-rps4 68564 68843 0 280 LSC 0.179592 44 35 32 84 no 1.000000 2 1.000000 NA 0.875000 77.600000 rps4 gene rps4 rps4 68844 69455 -1 612 LSC 0.075163 46 0 23 37 no 1.000000 2 1.000000 NA 1.000000 77.400000 IGS_063 igs rps4|trnT-UGU rps4-trnT-UGU 69456 69673 0 218 LSC 0.129353 26 17 5 34 no 1.000000 2 1.000000 NA 0.922018 76.900000 trnT-UGU tRNA trnT-UGU trnT-UGU 69674 69745 -1 72 LSC 0.027778 2 0 11 1 no 1.000000 2 1.000000 NA 1.000000 53.500000 IGS_064 igs trnT-UGU|petL trnT-UGU-petL 69746 71061 0 1316 LSC 0.182446 185 302 29 35 yes 1.000000 2 1.000000 NA 0.770517 80.700000 petL gene petL petL 71062 71157 1 96 LSC 0.031250 3 0 2 10 no 1.000000 2 1.000000 NA 1.000000 55.600000 IGS_065 igs petL|petG petL-petG 71158 71341 0 184 LSC 0.103261 19 0 36 11 no 1.000000 2 1.000000 NA 1.000000 73.300000 petG gene petG petG 71342 71455 1 114 LSC 0.047170 5 8 2 10 no 1.000000 2 1.000000 NA 0.929825 68.600000 IGS_066 igs petG|trnW-CCA petG-trnW-CCA 71456 71570 0 115 LSC 0.118182 13 5 21 31 no 1.000000 2 1.000000 NA 0.956522 78.300000 trnW-CCA tRNA trnW-CCA trnW-CCA 71571 71644 -1 74 LSC 0.040541 3 0 3 5 no 1.000000 2 1.000000 NA 1.000000 61.000000 IGS_067 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 71645 71797 0 153 LSC 0.111842 17 1 0 14 no 1.000000 2 1.000000 NA 0.993464 73.100000 trnP-UGG tRNA trnP-UGG trnP-UGG 71798 71871 -1 74 LSC 0.040541 3 0 10 13 no 1.000000 2 1.000000 NA 1.000000 61.600000 IGS_068 igs trnP-UGG|psaJ trnP-UGG-psaJ 71872 72354 0 483 LSC 0.102506 45 44 49 39 no 1.000000 2 1.000000 NA 0.908903 82.100000 psaJ gene psaJ psaJ 72355 72483 1 129 LSC 0.038760 5 0 17 15 no 1.000000 2 1.000000 NA 1.000000 60.900000 IGS_069 igs psaJ|rpl33 psaJ-rpl33 72484 73186 0 703 LSC 0.100000 64 63 21 2 no 1.000000 2 1.000000 NA 0.910384 81.500000 rpl33 gene rpl33 rpl33 73187 73426 1 240 LSC 0.066667 16 0 10 25 no 1.000000 2 1.000000 NA 1.000000 69.100000 IGS_070 igs rpl33|rps18 rpl33-rps18 73427 73837 0 411 LSC 0.104558 39 38 9 11 no 1.000000 2 1.000000 NA 0.907543 78.500000 rps18 gene rps18 rps18 73838 74215 1 378 LSC 0.052910 20 0 16 16 no 1.000000 2 1.000000 NA 1.000000 69.400000 IGS_071 igs rps18|rpl20 rps18-rpl20 74216 74449 0 234 LSC 0.057778 13 9 13 5 no 1.000000 2 1.000000 NA 0.961538 71.000000 rpl20 gene rpl20 rpl20 74450 74803 -1 354 LSC 0.031073 11 0 8 1 no 1.000000 2 1.000000 NA 1.000000 56.600000 IGS_072 igs rpl20|rps12 rpl20-rps12 74804 75499 0 696 LSC 0.080576 56 1 54 72 no 1.000000 2 1.000000 NA 0.998563 80.500000 rps12_part1 gene rps12 rps12 75500 75613 -1 114 LSC 0.017544 2 0 21 2 no 1.000000 2 1.000000 NA 1.000000 47.700000 IGS_073 igs rps12|clpP rps12-clpP 75614 75754 0 141 LSC 0.070922 10 0 14 0 no 1.000000 2 1.000000 NA 1.000000 68.900000 clpP gene clpP clpP 75755 76348 -1 594 LSC 0.109428 65 0 1 3 no 1.000000 2 1.000000 NA 1.000000 78.700000 IGS_074 igs clpP|psbB clpP-psbB 76349 77590 0 1242 LSC 0.225507 267 58 11 90 yes 1.000000 2 1.000000 NA 0.953301 84.100000 psbB gene psbB psbB 77591 79117 1 1527 LSC 0.023576 36 0 25 26 no 1.000000 2 1.000000 NA 1.000000 59.100000 IGS_075 igs psbB|psbT psbB-psbT 79118 79310 0 193 LSC 0.071038 13 10 13 98 no 1.000000 2 1.000000 NA 0.948187 74.200000 psbT gene psbT psbT 79311 79418 1 108 LSC 0.009259 1 0 47 6 no 1.000000 2 1.000000 NA 1.000000 43.300000 IGS_076 igs psbT|psbN psbT-psbN 79419 79507 0 89 LSC 0.070423 5 18 9 24 no 1.000000 2 1.000000 NA 0.797753 68.300000 psbN gene psbN psbN 79508 79639 -1 132 LSC 0.022727 3 0 21 4 no 1.000000 2 1.000000 NA 1.000000 50.900000 IGS_077 igs psbN|psbH psbN-psbH 79640 79757 0 118 LSC 0.067797 8 0 66 26 no 1.000000 2 1.000000 NA 1.000000 70.400000 psbH gene psbH psbH 79758 79979 1 222 LSC 0.040541 9 0 14 0 no 1.000000 2 1.000000 NA 1.000000 60.800000 IGS_078 igs psbH|petB psbH-petB 79980 80157 0 178 LSC 0.030675 5 15 6 22 no 1.000000 2 1.000000 NA 0.915730 59.100000 petB gene petB petB 80158 81643 1 1486 LSC 0.046034 65 74 99 34 no 1.000000 2 1.000000 NA 0.950202 77.300000 IGS_079 igs petB|petD petB-petD 81644 81841 0 198 LSC 0.030303 6 0 61 30 no 1.000000 2 1.000000 NA 1.000000 57.200000 petD gene petD petD 81842 83176 1 1335 LSC 0.046012 60 31 74 4 no 1.000000 2 1.000000 NA 0.976779 72.600000 IGS_080 igs petD|rpoA petD-rpoA 83177 83412 0 236 LSC 0.093220 22 0 9 22 no 1.000000 2 1.000000 NA 1.000000 72.300000 rpoA gene rpoA rpoA 83413 84432 -1 1020 LSC 0.035294 36 0 30 7 no 1.000000 2 1.000000 NA 1.000000 64.600000 IGS_081 igs rpoA|rps11 rpoA-rps11 84433 84499 0 67 LSC 0.111111 7 4 16 84 no 1.000000 2 1.000000 NA 0.940299 78.300000 rps11 gene rps11 rps11 84500 84913 -1 414 LSC 0.012077 5 0 6 30 no 1.000000 2 1.000000 NA 1.000000 47.300000 IGS_082 igs rps11|rpl36 rps11-rpl36 84914 85091 0 178 LSC 0.059172 10 9 90 88 no 1.000000 2 1.000000 NA 0.949438 78.500000 rpl36 gene rpl36 rpl36 85092 85205 -1 114 LSC 0.008772 1 0 1 25 no 1.000000 2 1.000000 NA 1.000000 42.600000 IGS_083 igs rpl36|infA rpl36-infA 85206 85269 0 64 LSC 0.078125 5 0 25 17 no 1.000000 2 1.000000 NA 1.000000 71.000000 infA gene infA infA 85270 85530 -1 261 LSC 0.022989 6 0 25 13 no 1.000000 2 1.000000 NA 1.000000 51.700000 IGS_084 igs infA|rps8 infA-rps8 85531 85686 0 156 LSC 0.098039 15 3 32 34 no 1.000000 2 1.000000 NA 0.980769 76.300000 rps8 gene rps8 rps8 85687 86097 -1 411 LSC 0.048662 20 0 3 5 no 1.000000 2 1.000000 NA 1.000000 68.000000 IGS_085 igs rps8|rpl14 rps8-rpl14 86098 86299 0 202 LSC 0.099010 20 0 21 42 no 1.000000 2 1.000000 NA 1.000000 74.000000 rpl14 gene rpl14 rpl14 86300 86668 -1 369 LSC 0.010840 4 0 1 6 no 1.000000 2 1.000000 NA 1.000000 45.200000 IGS_086 igs rpl14|rpl16 rpl14-rpl16 86669 86746 0 78 LSC 0.076923 6 0 29 2 no 1.000000 2 1.000000 NA 1.000000 69.800000 rpl16 gene rpl16 rpl16 86747 88215 -1 1469 LSC 0.046186 66 40 8 11 no 1.000000 2 1.000000 NA 0.972771 73.400000 IGS_087 igs rpl16|rps3 rpl16-rps3 88216 88344 0 129 LSC 0.085271 11 0 28 64 no 1.000000 2 1.000000 NA 1.000000 72.800000 rps3 gene rps3 rps3 88345 89046 -1 702 LSC 0.034188 24 0 8 25 no 1.000000 2 1.000000 NA 1.000000 64.000000 IGS_088 igs rps3|rpl22 rps3-rpl22 89047 89188 0 142 LSC 0.138686 19 5 3 0 no 1.000000 2 1.000000 NA 0.964789 75.900000 rpl22 gene rpl22 rpl22 89189 89608 -1 420 LSC 0.042857 18 0 3 18 no 1.000000 2 1.000000 NA 1.000000 64.900000 IGS_089 igs rpl22|rps19 rpl22-rps19 89609 89765 0 157 IRb 0.237705 29 35 11 197 no 1.000000 2 1.000000 NA 0.777070 73.300000 rps19 gene rps19 rps19 89766 90011 -1 246 IRb 0.004065 1 0 8 91 no 1.000000 2 1.000000 NA 1.000000 40.400000 IGS_090 igs rps19|trnH-GUG rps19-trnH-GUG 90012 90189 0 178 IRb 0.011236 2 0 48 83 no 1.000000 2 1.000000 NA 1.000000 47.600000 trnH-GUG tRNA trnH-GUG trnH-GUG 90190 90263 1 74 IRb 0.000000 0 0 23 9 no 0.000000 1 0.000000 NA 1.000000 19.400000 IGS_091 igs trnH-GUG|rpl2 trnH-GUG-rpl2 90264 90299 0 36 IRb 0.027778 1 0 97 51 no 1.000000 2 1.000000 NA 1.000000 57.300000 rpl2 gene rpl2 rpl2 90300 91792 -1 1493 IRb 0.019555 29 10 26 130 no 1.000000 2 1.000000 NA 0.993302 57.600000 IGS_092 igs rpl2|rpl23 rpl2-rpl23 91793 91872 0 80 IRb 0.000000 0 0 205 50 no 0.000000 1 0.000000 NA 1.000000 22.500000 rpl23 gene rpl23 rpl23 91873 92091 -1 219 IRb 0.027397 6 0 285 25 no 1.000000 2 1.000000 NA 1.000000 55.100000 IGS_093 igs rpl23|trnI-CAU rpl23-trnI-CAU 92092 92351 0 260 IRb 0.013245 2 109 2 95 no 1.000000 2 1.000000 NA 0.580769 39.300000 trnI-CAU tRNA trnI-CAU trnI-CAU 92352 92425 -1 74 IRb 0.000000 0 0 9 21 no 0.000000 1 0.000000 NA 1.000000 19.400000 IGS_094 igs trnI-CAU|trnL-CAA trnI-CAU-trnL-CAA 92426 92717 0 292 IRb 0.263889 76 4 83 33 no 1.000000 2 1.000000 NA 0.986301 76.300000 trnL-CAA tRNA trnL-CAA trnL-CAA 92718 92798 -1 81 IRb 0.012346 1 0 6 74 no 1.000000 2 1.000000 NA 1.000000 45.000000 IGS_095 igs trnL-CAA|ndhB trnL-CAA-ndhB 92799 93362 0 564 IRb 0.029740 16 26 47 9 no 1.000000 2 1.000000 NA 0.953901 65.100000 ndhB gene ndhB ndhB 93363 95614 -1 2252 IRb 0.006661 15 0 8 33 no 1.000000 2 1.000000 NA 1.000000 46.600000 IGS_096 igs ndhB|rps7 ndhB-rps7 95615 95908 0 294 IRb 0.014035 4 9 300 193 no 1.000000 2 1.000000 NA 0.969388 63.000000 rps7 gene rps7 rps7 95909 96376 -1 468 IRb 0.006410 3 0 103 256 no 1.000000 2 1.000000 NA 1.000000 52.400000 IGS_097 igs rps7|rps12 rps7-rps12 96377 96439 0 63 IRb 0.000000 0 0 32 193 no 0.000000 1 0.000000 NA 1.000000 21.100000 rps12_part2 gene rps12 rps12 96440 97240 -1 801 IRb 0.004994 4 0 95 111 no 1.000000 2 1.000000 NA 1.000000 53.700000 IGS_098 igs rps12|trnV-GAC rps12-trnV-GAC 97241 98742 0 1502 IRb 0.021633 31 69 300 137 no 1.000000 2 1.000000 NA 0.954061 70.800000 trnV-GAC tRNA trnV-GAC trnV-GAC 98743 98814 1 72 IRb 0.000000 0 0 98 65 no 0.000000 1 0.000000 NA 1.000000 23.600000 IGS_099 igs trnV-GAC|rrn16 trnV-GAC-rrn16 98815 99137 0 323 IRb 0.024138 7 33 170 250 no 1.000000 2 1.000000 NA 0.897833 67.700000 rrn16 rRNA rrn16 rrn16 99138 100629 1 1492 IRb 0.003351 5 0 44 69 no 1.000000 2 1.000000 NA 1.000000 49.000000 IGS_100 igs rrn16|trnI-GAU rrn16-trnI-GAU 100630 100945 0 316 IRb 0.028846 9 4 164 63 no 1.000000 2 1.000000 NA 0.987342 60.300000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 100946 100982 1 37 IRb 0.000000 0 0 18 26 no 0.000000 1 0.000000 NA 1.000000 20.100000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 101920 101954 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_103 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 101955 102022 0 68 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 102023 102060 1 38 IRb 0.000000 0 0 300 262 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 102874 102908 1 35 IRb 0.000000 0 0 154 46 no 0.000000 1 0.000000 NA 1.000000 22.200000 IGS_106 igs trnA-UGC|rrn23 trnA-UGC-rrn23 102909 103059 0 151 IRb 0.013245 2 0 189 300 no 1.000000 2 1.000000 NA 1.000000 59.300000 rrn23 rRNA rrn23 rrn23 103060 105880 1 2821 IRb 0.001427 4 18 103 37 no 1.000000 2 1.000000 NA 0.993619 45.200000 IGS_107 igs rrn23|rrn4.5 rrn23-rrn4.5 105881 105980 0 100 IRb 0.030000 3 0 300 106 no 1.000000 2 1.000000 NA 1.000000 62.700000 rrn4.5 rRNA rrn4.5 rrn4.5 105981 106083 1 103 IRb 0.000000 0 0 43 3 no 0.000000 1 0.000000 NA 1.000000 19.000000 IGS_108 igs rrn4.5|rrn5 rrn4.5-rrn5 106084 106288 0 205 IRb 0.051136 9 29 146 56 no 1.000000 2 1.000000 NA 0.858537 72.000000 rrn5 rRNA rrn5 rrn5 106289 106409 1 121 IRb 0.008264 1 0 1 0 no 1.000000 2 1.000000 NA 1.000000 42.300000 IGS_109 igs rrn5|ndhF rrn5-ndhF 106410 106771 0 362 IRb 0.268707 79 68 64 2 no 1.000000 2 1.000000 NA 0.812155 74.900000 ndhF gene ndhF ndhF 106772 108997 -1 2226 SSC 0.059299 132 0 4 23 no 1.000000 2 1.000000 NA 1.000000 72.400000 IGS_110 igs ndhF|rpl32 ndhF-rpl32 108998 109860 0 863 SSC 0.139360 74 332 27 14 no 1.000000 2 1.000000 NA 0.615295 73.400000 rpl32 gene rpl32 rpl32 109861 110091 1 231 SSC 0.073593 17 0 4 1 no 1.000000 2 1.000000 NA 1.000000 69.300000 IGS_111 igs rpl32|trnL-UAG rpl32-trnL-UAG 110092 111156 0 1065 SSC 0.138794 122 186 7 49 no 1.000000 2 1.000000 NA 0.825352 80.600000 trnL-UAG tRNA trnL-UAG trnL-UAG 111157 111236 1 80 SSC 0.012500 1 0 6 2 no 1.000000 2 1.000000 NA 1.000000 44.800000 IGS_112 igs trnL-UAG|ccsA trnL-UAG-ccsA 111237 111323 0 87 SSC 0.130952 11 3 30 3 no 1.000000 2 1.000000 NA 0.965517 76.100000 ccsA gene ccsA ccsA 111324 112280 1 957 SSC 0.045977 44 0 12 8 no 1.000000 2 1.000000 NA 1.000000 70.800000 IGS_113 igs ccsA|ndhD ccsA-ndhD 112281 112575 0 295 SSC 0.116466 29 46 66 29 no 1.000000 2 1.000000 NA 0.844068 76.300000 ndhD gene ndhD ndhD 112576 114123 -1 1548 SSC 0.043282 67 0 9 1 no 1.000000 2 1.000000 NA 1.000000 68.600000 IGS_114 igs ndhD|psaC ndhD-psaC 114124 114195 0 72 SSC 0.013889 1 0 2 13 no 1.000000 2 1.000000 NA 1.000000 45.600000 psaC gene psaC psaC 114196 114441 -1 246 SSC 0.048780 12 0 70 26 no 1.000000 2 1.000000 NA 1.000000 67.500000 IGS_115 igs psaC|ndhE psaC-ndhE 114442 115073 0 632 SSC 0.095726 56 47 11 75 no 1.000000 2 1.000000 NA 0.925633 82.300000 ndhE gene ndhE ndhE 115074 115376 -1 303 SSC 0.016502 5 0 17 4 no 1.000000 2 1.000000 NA 1.000000 47.400000 IGS_116 igs ndhE|ndhG ndhE-ndhG 115377 115624 0 248 SSC 0.111732 20 69 9 132 no 1.000000 2 1.000000 NA 0.721774 69.200000 ndhG gene ndhG ndhG 115625 116155 -1 531 SSC 0.032015 17 0 3 41 no 1.000000 2 1.000000 NA 1.000000 60.900000 IGS_117 igs ndhG|ndhI ndhG-ndhI 116156 116884 0 729 SSC 0.152338 101 66 5 6 no 1.000000 2 1.000000 NA 0.909465 82.800000 ndhI gene ndhI ndhI 116885 117427 -1 543 SSC 0.033149 18 0 23 25 no 1.000000 2 1.000000 NA 1.000000 63.300000 IGS_118 igs ndhI|ndhA ndhI-ndhA 117428 117516 0 89 SSC 0.101124 9 0 78 21 no 1.000000 2 1.000000 NA 1.000000 74.100000 ndhA gene ndhA ndhA 117517 119710 -1 2194 SSC 0.055786 121 25 0 76 no 1.000000 2 1.000000 NA 0.988605 72.800000 IGS_119 igs ndhA|ndhH ndhA-ndhH 119711 119711 0 1 SSC 0.000000 0 0 6 75 no 0.000000 1 0.000000 NA 1.000000 19.200000 ndhH gene ndhH ndhH 119712 120893 -1 1182 SSC 0.021997 26 0 7 21 no 1.000000 2 1.000000 NA 1.000000 56.900000 IGS_120 igs ndhH|rps15 ndhH-rps15 120894 121033 0 140 SSC 0.105691 13 17 56 3 no 1.000000 2 1.000000 NA 0.878571 74.700000 rps15 gene rps15 rps15 121034 121297 -1 264 SSC 0.068182 18 0 6 4 no 1.000000 2 1.000000 NA 1.000000 68.800000 IGS_121 igs rps15|trnN-GUU rps15-trnN-GUU 121298 122688 0 1391 SSC 0.182975 230 134 46 18 yes 1.000000 2 1.000000 NA 0.903666 83.600000 trnN-GUU tRNA trnN-GUU trnN-GUU 122689 122760 1 72 SSC 0.013889 1 0 0 4 no 1.000000 2 1.000000 NA 1.000000 45.500000 IGS_122 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 122761 123190 0 430 SSC 0.195804 84 1 53 5 no 1.000000 2 1.000000 NA 0.997674 75.800000 trnR-ACG tRNA trnR-ACG trnR-ACG 123191 123264 -1 74 SSC 0.013514 1 0 3 3 no 1.000000 2 1.000000 NA 1.000000 45.500000 IGS_123 igs trnR-ACG|rrn5 trnR-ACG-rrn5 123265 123576 0 312 IRa 0.274590 67 68 68 64 no 1.000000 2 1.000000 NA 0.782051 77.700000 rrn5 rRNA rrn5 rrn5 123577 123697 -1 121 IRa 0.008264 1 0 0 1 no 1.000000 2 1.000000 NA 1.000000 42.300000 IGS_124 igs rrn5|rrn4.5 rrn5-rrn4.5 123698 123902 0 205 IRa 0.051136 9 29 56 146 no 1.000000 2 1.000000 NA 0.858537 72.000000 rrn4.5 rRNA rrn4.5 rrn4.5 123903 124005 -1 103 IRa 0.000000 0 0 3 43 no 0.000000 1 0.000000 NA 1.000000 19.000000 IGS_125 igs rrn4.5|rrn23 rrn4.5-rrn23 124006 124105 0 100 IRa 0.030000 3 0 106 300 no 1.000000 2 1.000000 NA 1.000000 62.700000 rrn23 rRNA rrn23 rrn23 124106 126926 -1 2821 IRa 0.001427 4 18 37 103 no 1.000000 2 1.000000 NA 0.993619 45.200000 IGS_126 igs rrn23|trnA-UGC rrn23-trnA-UGC 126927 127077 0 151 IRa 0.013245 2 0 300 189 no 1.000000 2 1.000000 NA 1.000000 59.300000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 127078 127112 -1 35 IRa 0.000000 0 0 46 154 no 0.000000 1 0.000000 NA 1.000000 22.200000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 127926 127963 -1 38 IRa 0.000000 0 0 262 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_129 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 127964 128031 0 68 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 128032 128066 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 129004 129040 -1 37 IRa 0.000000 0 0 26 18 no 0.000000 1 0.000000 NA 1.000000 20.100000 IGS_132 igs trnI-GAU|rrn16 trnI-GAU-rrn16 129041 129356 0 316 IRa 0.028846 9 4 63 164 no 1.000000 2 1.000000 NA 0.987342 60.300000 rrn16 rRNA rrn16 rrn16 129357 130848 -1 1492 IRa 0.003351 5 0 69 44 no 1.000000 2 1.000000 NA 1.000000 49.000000 IGS_133 igs rrn16|trnV-GAC rrn16-trnV-GAC 130849 131171 0 323 IRa 0.024138 7 33 250 170 no 1.000000 2 1.000000 NA 0.897833 67.700000 trnV-GAC tRNA trnV-GAC trnV-GAC 131172 131243 -1 72 IRa 0.000000 0 0 65 98 no 0.000000 1 0.000000 NA 1.000000 23.600000 IGS_134 igs trnV-GAC|rps12 trnV-GAC-rps12 131244 132745 0 1502 IRa 0.021633 31 69 137 300 no 1.000000 2 1.000000 NA 0.954061 70.800000 rps12_part2 gene rps12 rps12 132746 133546 1 801 IRa 0.004994 4 0 111 95 no 1.000000 2 1.000000 NA 1.000000 53.700000 IGS_135 igs rps12|rps7 rps12-rps7 133547 133609 0 63 IRa 0.000000 0 0 193 32 no 0.000000 1 0.000000 NA 1.000000 21.100000 rps7 gene rps7 rps7 133610 134077 1 468 IRa 0.006410 3 0 256 103 no 1.000000 2 1.000000 NA 1.000000 52.400000 IGS_136 igs rps7|ndhB rps7-ndhB 134078 134371 0 294 IRa 0.014035 4 9 193 300 no 1.000000 2 1.000000 NA 0.969388 63.000000 ndhB gene ndhB ndhB 134372 136623 1 2252 IRa 0.006661 15 0 33 8 no 1.000000 2 1.000000 NA 1.000000 46.600000 IGS_137 igs ndhB|trnL-CAA ndhB-trnL-CAA 136624 137187 0 564 IRa 0.029740 16 26 9 47 no 1.000000 2 1.000000 NA 0.953901 65.100000 trnL-CAA tRNA trnL-CAA trnL-CAA 137188 137268 1 81 IRa 0.012346 1 0 74 6 no 1.000000 2 1.000000 NA 1.000000 45.000000 IGS_138 igs trnL-CAA|trnI-CAU trnL-CAA-trnI-CAU 137269 137560 0 292 IRa 0.263889 76 4 33 83 no 1.000000 2 1.000000 NA 0.986301 76.300000 trnI-CAU tRNA trnI-CAU trnI-CAU 137561 137634 1 74 IRa 0.000000 0 0 21 9 no 0.000000 1 0.000000 NA 1.000000 19.400000 IGS_139 igs trnI-CAU|rpl2 trnI-CAU-rpl2 137635 138193 0 559 IRa 0.017778 8 109 95 205 no 1.000000 2 1.000000 NA 0.805009 60.600000 rpl2 gene rpl2 rpl2 138194 139686 1 1493 IRa 0.019555 29 10 130 26 no 1.000000 2 1.000000 NA 0.993302 57.600000 IGS_140 igs rpl2|trnH-GUG rpl2-trnH-GUG 139687 139722 0 36 IRa 0.027778 1 0 51 97 no 1.000000 2 1.000000 NA 1.000000 57.300000 trnH-GUG tRNA trnH-GUG trnH-GUG 139723 139796 -1 74 IRa 0.000000 0 0 9 23 no 0.000000 1 0.000000 NA 1.000000 19.400000 IGS_141 igs trnH-GUG|psbA trnH-GUG-psbA 139797 193 0 699 IRa 0.017013 9 170 83 25 no 1.000000 2 1.000000 NA 0.756795 54.300000