primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score trnH-GUG-psbA_p1 trnH-GUG-psbA 1 GATCCACTTGGCTACATCCG TCAGTGCTATGCATGGTTCC 20 20 55.0 50.0 58.1 58.0 0.0 10.2 0.171606 89 663 964-1024 1.000000 86.4 trnH-GUG-psbA_p2 trnH-GUG-psbA 2 GATCCACTTGGCTACATCCG CAGTGCTATGCATGGTTCCT 20 20 55.0 50.0 58.1 58.0 0.0 10.2 0.177364 89 663 963-1023 1.000000 86.4 trnH-GUG-psbA_p3 trnH-GUG-psbA 3 CAATCCACTGCCTTGATCCA TCAGTGCTATGCATGGTTCC 20 20 50.0 50.0 57.9 58.0 0.0 10.2 0.175967 89 663 978-1038 1.000000 86.3 trnH-GUG-psbA_p4 trnH-GUG-psbA 4 AATCCACTGCCTTGATCCAC TCAGTGCTATGCATGGTTCC 20 20 50.0 50.0 57.9 58.0 0.0 10.2 0.177475 89 663 977-1037 1.000000 86.3 trnH-GUG-psbA_p5 trnH-GUG-psbA 5 ACAATCCACTGCCTTGATCC TCAGTGCTATGCATGGTTCC 20 20 50.0 50.0 57.9 58.0 0.0 10.2 0.177475 89 663 979-1039 1.000000 86.3 trnK-UUU-rps16_p1 trnK-UUU-rps16 1 AAAGCCGAGTACTCTACCGT GGCTCAACCCACAGGAAC 20 18 50.0 61.1 58.2 57.9 20.3 0.0 2.249470 4506 5371 975-1048 1.000000 67.0 trnK-UUU-rps16_p2 trnK-UUU-rps16 2 AAGCCGAGTACTCTACCGTT GGCTCAACCCACAGGAAC 20 18 50.0 61.1 58.2 57.9 20.3 0.0 2.249470 4506 5371 974-1047 1.000000 67.0 trnK-UUU-rps16_p3 trnK-UUU-rps16 3 CCGCACTTAAAAGCCGAGTA GGCTCAACCCACAGGAAC 20 18 50.0 61.1 58.3 57.9 5.3 0.0 2.363856 4506 5371 984-1057 1.000000 66.0 trnK-UUU-rps16_p4 trnK-UUU-rps16 4 AAAGCCGAGTACTCTACCGT GGCTCAACCCACAGGAACT 20 19 50.0 57.9 58.2 59.5 20.3 0.0 2.712133 4506 5371 975-1048 1.000000 63.3 trnK-UUU-rps16_p5 trnK-UUU-rps16 5 AAGCCGAGTACTCTACCGTT GGCTCAACCCACAGGAACT 20 19 50.0 57.9 58.2 59.5 20.3 0.0 2.712133 4506 5371 974-1047 1.000000 63.3 rps16-trnQ-UUG_p1 rps16-trnQ-UUG 1 AAGTCGCACGTTGCTTTCTA GAGGTTCGAATCCTTCCGTC 20 20 45.0 55.0 58.1 58.1 8.1 16.9 0.215425 6478 7549 1145-1256 1.000000 83.1 rps16-trnQ-UUG_p2 rps16-trnQ-UUG 2 GGATCGTGTCCTTCAAGTCG GAGGTTCGAATCCTTCCGTC 20 20 55.0 55.0 58.4 58.1 2.9 16.9 0.445953 6478 7549 1159-1270 1.000000 81.2 rps16-trnQ-UUG_p3 rps16-trnQ-UUG 3 AAGTCGCACGTTGCTTTCTA TTCGGAGGTTCGAATCCTTC 20 20 45.0 50.0 58.1 57.3 8.1 16.9 0.806797 6478 7549 1149-1260 1.000000 78.4 rps16-trnQ-UUG_p4 rps16-trnQ-UUG 4 AAGTCGCACGTTGCTTTCTA TAAGGCAACGGGTTTTGGTC 20 20 45.0 50.0 58.1 58.7 8.1 0.0 0.818817 6478 7549 1175-1286 1.000000 78.2 rps16-trnQ-UUG_p5 rps16-trnQ-UUG 5 CGTTGCTTTCTACCACATCG GAGGTTCGAATCCTTCCGTC 20 20 50.0 55.0 57.2 58.1 0.0 16.9 0.863824 6478 7549 1137-1248 1.000000 78.0 psbI-trnS-GCU_p1 psbI-trnS-GCU 1 ATCTAATGATCCGGGGCGTA TGGACTAAAGCGTCGGATTG 20 20 50.0 50.0 58.1 58.0 0.0 0.0 0.071561 8648 8772 228-238 1.000000 86.0 psbI-trnS-GCU_p2 psbI-trnS-GCU 2 TATCTAATGATCCGGGGCGT TGGACTAAAGCGTCGGATTG 20 20 50.0 50.0 58.1 58.0 0.0 0.0 0.071561 8648 8772 229-239 1.000000 85.9 psbI-trnS-GCU_p3 psbI-trnS-GCU 3 ATCTAATGATCCGGGGCGTA GTGGACTAAAGCGTCGGATT 20 20 50.0 50.0 58.1 58.0 0.0 0.0 0.072949 8648 8772 229-239 1.000000 85.9 psbI-trnS-GCU_p4 psbI-trnS-GCU 4 TATCTAATGATCCGGGGCGT GTGGACTAAAGCGTCGGATT 20 20 50.0 50.0 58.1 58.0 0.0 0.0 0.072949 8648 8772 230-240 1.000000 85.9 psbI-trnS-GCU_p5 psbI-trnS-GCU 5 ATCTAATGATCCGGGGCGTA ATTGGGAGAGATGGCTGAGT 20 20 50.0 50.0 58.1 58.1 0.0 0.0 0.176426 8648 8772 247-257 1.000000 84.6 rpoB-trnC-GCA_p1 rpoB-trnC-GCA 1 AGTTCTTCTGTCAAACCCTGA CCGGATTTGAACTGGGGAAA 21 20 42.9 50.0 56.8 58.1 0.0 0.0 2.296250 27086 28303 1360-1378 1.000000 65.2 rpoB-trnC-GCA_p2 rpoB-trnC-GCA 2 TCAAACCCTGATCAATGAACCT CCGGATTTGAACTGGGGAAA 22 20 40.9 50.0 57.6 58.1 0.0 0.0 2.469154 27086 28303 1350-1368 1.000000 63.8 rpoB-trnC-GCA_p3 rpoB-trnC-GCA 3 TCTTCTGTCAAACCCTGATCA CCGGATTTGAACTGGGGAAA 21 20 42.9 50.0 56.6 58.1 0.0 0.0 2.507733 27086 28303 1357-1375 1.000000 63.5 rpoB-trnC-GCA_p4 rpoB-trnC-GCA 4 GTCAAACCCTGATCAATGAACC CCGGATTTGAACTGGGGAAA 22 20 45.5 50.0 57.6 58.1 0.0 0.0 2.522967 27086 28303 1351-1369 1.000000 63.4 rpoB-trnC-GCA_p5 rpoB-trnC-GCA 5 AGTTCTTCTGTCAAACCCTGA AAAAGGATTTGCAGTCCCCC 21 20 42.9 50.0 56.8 58.4 0.0 14.6 2.569613 27086 28303 1342-1360 1.000000 63.1 trnC-GCA-petN_p1 trnC-GCA-petN 1 TTTCCCCAGTTCAAATCCGG ACTTCTTCCCCACACTACGA 20 20 50.0 50.0 58.1 58.0 0.0 0.0 0.087498 28375 29236 950-972 1.000000 84.9 trnC-GCA-petN_p2 trnC-GCA-petN 2 TTTCCCCAGTTCAAATCCGG TTCTTCCCCACACTACGAGT 20 20 50.0 50.0 58.1 58.0 0.0 0.0 0.087498 28375 29236 948-970 1.000000 84.9 trnC-GCA-petN_p3 trnC-GCA-petN 3 TTTTGGATCATTTTGGCGGC ACTTCTTCCCCACACTACGA 20 20 45.0 50.0 57.9 58.0 0.0 0.0 0.097222 28375 29236 1006-1028 1.000000 84.5 trnC-GCA-petN_p4 trnC-GCA-petN 4 TTTTGGATCATTTTGGCGGC TTCTTCCCCACACTACGAGT 20 20 45.0 50.0 57.9 58.0 0.0 0.0 0.097222 28375 29236 1004-1026 1.000000 84.5 trnC-GCA-petN_p5 trnC-GCA-petN 5 TTTCCCCAGTTCAAATCCGG CACTTCTTCCCCACACTACG 20 20 50.0 55.0 58.1 57.9 0.0 0.0 0.162414 28375 29236 951-973 1.000000 84.3 petN-psbM_p1 petN-psbM 1 ACTCGTAGTGTGGGGAAGAA ACGTAAAAACAGTCAGTCAA 20 20 50.0 35.0 58.0 53.0 0.0 0.0 4.970112 29327 30325 1042-1059 1.000000 47.0 petN-psbM_p2 petN-psbM 2 TCGTAGTGTGGGGAAGAAGT ACGTAAAAACAGTCAGTCAA 20 20 50.0 35.0 58.0 53.0 0.0 0.0 4.970112 29327 30325 1040-1057 1.000000 47.0 petN-psbM_p3 petN-psbM 3 CGTAGTGTGGGGAAGAAGTG ACGTAAAAACAGTCAGTCAA 20 20 55.0 35.0 57.9 53.0 0.0 0.0 5.045028 29327 30325 1039-1056 1.000000 46.8 petN-psbM_p4 petN-psbM 4 ACTCGTAGTGTGGGGAAGAA ACGTAAAAACAGTCAGTCAAA 20 21 50.0 33.3 58.0 53.9 0.0 0.0 5.067998 29327 30325 1042-1059 1.000000 46.8 petN-psbM_p5 petN-psbM 5 TCGTAGTGTGGGGAAGAAGT ACGTAAAAACAGTCAGTCAAA 20 21 50.0 33.3 58.0 53.9 0.0 0.0 5.067998 29327 30325 1040-1057 1.000000 46.8 trnG-GCC-trnfM-CAU_p1 trnG-GCC-trnfM-CAU 1 AGAAGATGCGGGTTCGATTC CTTGAGGTCACGGGTTCAAA 20 20 50.0 50.0 58.1 58.0 0.0 4.2 0.096882 37019 37192 239-240 1.000000 85.9 trnG-GCC-trnfM-CAU_p2 trnG-GCC-trnfM-CAU 2 GAGAAGATGCGGGTTCGATT CTTGAGGTCACGGGTTCAAA 20 20 50.0 50.0 58.1 58.0 0.0 4.2 0.096882 37019 37192 240-241 1.000000 85.9 trnG-GCC-trnfM-CAU_p3 trnG-GCC-trnfM-CAU 3 AGAAGATGCGGGTTCGATTC GTCACGGGTTCAAATCCTGT 20 20 50.0 50.0 58.1 58.1 0.0 0.0 0.166466 37019 37192 233-234 1.000000 85.5 trnG-GCC-trnfM-CAU_p4 trnG-GCC-trnfM-CAU 4 AGAAGATGCGGGTTCGATTC GGGTAGAGCAGTTTGGTAGC 20 20 50.0 55.0 58.1 58.0 0.0 0.0 0.084264 37019 37192 275-276 1.000000 85.1 trnG-GCC-trnfM-CAU_p5 trnG-GCC-trnfM-CAU 5 GAGAAGATGCGGGTTCGATT GGGTAGAGCAGTTTGGTAGC 20 20 50.0 55.0 58.1 58.0 0.0 0.0 0.084264 37019 37192 276-277 1.000000 85.1 trnT-UGU-trnL-UAA_p1 trnT-UGU-trnL-UAA 1 GCGATGCTCTAACCTCTGAG CCGTAGCGTCTACCGATTTC 20 20 55.0 55.0 57.9 58.2 0.0 10.2 0.381189 47317 47988 733-766 1.000000 81.3 trnT-UGU-trnL-UAA_p2 trnT-UGU-trnL-UAA 2 GGAATCGAACCGATGACCAT CCGTAGCGTCTACCGATTTC 20 20 50.0 55.0 57.8 58.2 15.5 10.2 0.488942 47317 47988 765-798 1.000000 80.3 trnT-UGU-trnL-UAA_p3 trnT-UGU-trnL-UAA 3 TAGGAAAAAGCCGGCTATCG CCGTAGCGTCTACCGATTTC 20 20 50.0 55.0 57.8 58.2 33.1 10.2 0.482748 47317 47988 784-817 1.000000 80.2 trnT-UGU-trnL-UAA_p4 trnT-UGU-trnL-UAA 4 GCGATGCTCTAACCTCTGAG CGTCTACCGATTTCGCCATA 20 20 55.0 50.0 57.9 57.6 0.0 0.0 0.543526 47317 47988 727-760 1.000000 80.1 trnT-UGU-trnL-UAA_p5 trnT-UGU-trnL-UAA 5 GCGATGCTCTAACCTCTGAG GGTTTCCATACCAAGGCTCA 20 20 55.0 50.0 57.9 57.5 0.0 0.0 0.640147 47317 47988 765-798 1.000000 79.1 trnL-UAA-trnF-GAA_p1 trnL-UAA-trnF-GAA 1 AATCGTGAGGGTTCAAGTCC GACTTGAACTGGTGACACGA 20 20 50.0 50.0 57.5 57.8 0.0 0.0 0.693363 48570 48939 442-463 1.000000 82.3 trnL-UAA-trnF-GAA_p2 trnL-UAA-trnF-GAA 2 AATCGTGAGGGTTCAAGTCC ACTTGAACTGGTGACACGAG 20 20 50.0 50.0 57.5 57.8 0.0 15.3 0.699478 48570 48939 441-462 1.000000 82.3 trnL-UAA-trnF-GAA_p3 trnL-UAA-trnF-GAA 3 AATCGTGAGGGTTCAAGTCC AGACTTGAACTGGTGACACG 20 20 50.0 50.0 57.5 57.8 0.0 0.0 0.699478 48570 48939 443-464 1.000000 82.3 trnL-UAA-trnF-GAA_p4 trnL-UAA-trnF-GAA 4 AATCGTGAGGGTTCAAGTCC TACCAACTGAGCTATCCCGA 20 20 50.0 50.0 57.5 57.6 0.0 0.0 0.921818 48570 48939 402-423 1.000000 80.9 trnL-UAA-trnF-GAA_p5 trnL-UAA-trnF-GAA 5 AATCGTGAGGGTTCAAGTCC GAACTGGTGACACGAGGATT 20 20 50.0 50.0 57.5 57.5 0.0 20.1 0.931776 48570 48939 437-458 1.000000 80.5 rpl36-infA_p1 rpl36-infA 1 CTATAATACGCCCCCGCCTA ACGCATACTGCCAGGAGATA 20 20 55.0 50.0 58.5 58.3 0.0 0.0 0.817806 80372 80469 268-274 1.000000 76.7 rpl36-infA_p2 rpl36-infA 2 CTATAATACGCCCCCGCCTA ATACGCATACTGCCAGGAGA 20 20 55.0 50.0 58.5 58.3 0.0 0.0 0.817806 80372 80469 270-276 1.000000 76.7 rpl36-infA_p3 rpl36-infA 3 CTATAATACGCCCCCGCCTA TACGCATACTGCCAGGAGAT 20 20 55.0 50.0 58.5 58.3 0.0 0.0 0.817806 80372 80469 269-275 1.000000 76.7 rpl36-infA_p4 rpl36-infA 4 TATAATACGCCCCCGCCTAC ACGCATACTGCCAGGAGATA 20 20 55.0 50.0 58.8 58.3 0.0 0.0 1.110044 80372 80469 267-273 1.000000 74.4 rpl36-infA_p5 rpl36-infA 5 TATAATACGCCCCCGCCTAC TACGCATACTGCCAGGAGAT 20 20 55.0 50.0 58.8 58.3 0.0 0.0 1.110044 80372 80469 268-274 1.000000 74.4 ndhF_p1 ndhF 1 AATACCCCTTTCGGATCGGA GCCCAGTACCCCTTTCTTTT 20 20 50.0 50.0 58.2 57.7 0.0 0.0 0.506901 109409 111667 2921-2921 0.500000 55.9 ndhF_p2 ndhF 2 ATACCCCTTTCGGATCGGAA GCCCAGTACCCCTTTCTTTT 20 20 50.0 50.0 58.2 57.7 11.4 0.0 0.506901 109409 111667 2920-2920 0.500000 55.9 ndhF_p3 ndhF 3 TACCCCTTTCGGATCGGAAT GCCCAGTACCCCTTTCTTTT 20 20 50.0 50.0 58.2 57.7 15.6 0.0 0.506901 109409 111667 2919-2919 0.500000 55.9 ndhF_p4 ndhF 4 CCCTTTCGGATCGGAATTCA GCCCAGTACCCCTTTCTTTT 20 20 50.0 50.0 57.7 57.7 15.6 0.0 0.629804 109409 111667 2916-2916 0.500000 55.0 ndhF_p5 ndhF 5 TACCCCTTTCGGATCGGAAT TTTTAACGCTGCCCAGTACC 20 20 50.0 50.0 58.2 58.5 15.6 0.0 0.676739 109409 111667 2929-2929 0.500000 54.6 rpl32-trnL-UAG_p1 rpl32-trnL-UAG 1 AGTTTCTTTGTAGGACAAACA AGCGTGTCTACCGATTTCAC 21 20 33.3 50.0 53.2 58.0 0.7 0.0 5.807481 112353 112835 557-911 1.000000 44.8 rpl32-trnL-UAG_p2 rpl32-trnL-UAG 2 AGTTTCTTTGTAGGACAAACA CAGCGTGTCTACCGATTTCA 21 20 33.3 50.0 53.2 58.0 0.7 0.0 5.808852 112353 112835 558-912 1.000000 44.8 rpl32-trnL-UAG_p3 rpl32-trnL-UAG 3 AAGTTTCTTTGTAGGACAAACA AGCGTGTCTACCGATTTCAC 22 20 31.8 50.0 54.1 58.0 0.7 0.0 5.938235 112353 112835 558-912 1.000000 44.8 rpl32-trnL-UAG_p4 rpl32-trnL-UAG 4 AGTTTCTTTGTAGGACAAACAA AGCGTGTCTACCGATTTCAC 22 20 31.8 50.0 54.1 58.0 0.7 0.0 5.938235 112353 112835 557-911 1.000000 44.8 rpl32-trnL-UAG_p5 rpl32-trnL-UAG 5 AGTTTCTTTGTAGGACAAACA TCCTAAGAGCAGCGTGTCTA 21 20 33.3 50.0 53.2 57.9 0.7 0.0 5.923928 112353 112835 567-921 1.000000 44.7 ccsA-ndhD_p1 ccsA-ndhD 1 GGGGTCAATCTATTAGGAATAGGAC GGTTGAAGTTATTCTATCTAATTCT 25 25 44.0 28.0 58.1 52.7 6.4 0.0 15.382289 113989 114213 314-325 1.000000 45.8 ccsA-ndhD_p2 ccsA-ndhD 2 TGGGGTCAATCTATTAGGAATAGG GGTTGAAGTTATTCTATCTAATTCT 24 25 41.7 28.0 57.0 52.7 6.4 0.0 15.283483 113989 114213 315-326 1.000000 45.7 ccsA-ndhD_p3 ccsA-ndhD 3 TGGATATGTTATTTTGGGGTCA GGTTGAAGTTATTCTATCTAATTCT 22 25 36.4 28.0 55.1 52.7 0.0 0.0 15.232042 113989 114213 329-340 1.000000 45.5 ccsA-ndhD_p4 ccsA-ndhD 4 TGGATATGTTATTTTGGGGTCAA GGTTGAAGTTATTCTATCTAATTCT 23 25 34.8 28.0 55.9 52.7 0.0 0.0 15.469233 113989 114213 329-340 1.000000 45.5 ccsA-ndhD_p5 ccsA-ndhD 5 TTGGATATGTTATTTTGGGGTCA GGTTGAAGTTATTCTATCTAATTCT 23 25 34.8 28.0 55.9 52.7 0.0 0.0 15.469233 113989 114213 330-341 1.000000 45.5 ndhD_p1 ndhD 1 TTGGAGTTGGGACCCAAAAG GATACCCTGGGACGGATGTA 20 20 50.0 55.0 57.9 58.0 27.9 22.2 0.086024 114214 115716 2221-2233 1.000000 82.3 ndhD_p2 ndhD 2 CTAACGAAGCATGGGGATCC GATACCCTGGGACGGATGTA 20 20 55.0 55.0 58.1 58.0 1.9 22.2 0.121135 114214 115716 2243-2255 1.000000 82.0 ndhD_p3 ndhD 3 TTGGAGTTGGGACCCAAAAG TGTGAATCTGCCTGTCCAAC 20 20 50.0 50.0 57.9 58.1 27.9 0.0 0.184434 114214 115716 2145-2157 1.000000 81.5 ndhD_p4 ndhD 4 TTGGAGTTGGGACCCAAAAG AAATGATACCCTGGGACGGA 20 20 50.0 50.0 57.9 58.1 27.9 22.2 0.192857 114214 115716 2225-2237 1.000000 81.4 ndhD_p5 ndhD 5 TTCAGCAATTGTGGCGTCTA GATACCCTGGGACGGATGTA 20 20 45.0 55.0 57.8 58.0 7.4 22.2 0.182764 114214 115716 2134-2134 0.500000 58.5 ndhD-psaC_p1 ndhD-psaC 1 TTTGCCCACTGTACATTGCT GATACCCTGGGACGGATGTA 20 20 45.0 55.0 58.0 58.0 7.7 22.2 0.011414 115717 115844 666-667 1.000000 84.0 ndhD-psaC_p2 ndhD-psaC 2 AACCGATACCCAGAACTCCA GATACCCTGGGACGGATGTA 20 20 50.0 55.0 58.1 58.0 0.0 22.2 0.058386 115717 115844 849-850 1.000000 83.1 ndhD-psaC_p3 ndhD-psaC 3 ACCGATACCCAGAACTCCAA GATACCCTGGGACGGATGTA 20 20 50.0 55.0 58.1 58.0 0.0 22.2 0.058386 115717 115844 848-849 1.000000 83.1 ndhD-psaC_p4 ndhD-psaC 4 CCCCCTGCTGTGTACAAAAT GATACCCTGGGACGGATGTA 20 20 50.0 55.0 58.1 58.0 0.0 22.2 0.082014 115717 115844 811-812 1.000000 83.1 ndhD-psaC_p5 ndhD-psaC 5 ATAATGCGCTTCTCCATGGG GATACCCTGGGACGGATGTA 20 20 50.0 55.0 58.1 58.0 13.0 22.2 0.103779 115717 115844 1019-1020 1.000000 82.5 ycf1_p1 ycf1 1 CATTCCTGACAGCCCTTTCA TCGTCGTGGTTGGACTCTAT 20 20 50.0 50.0 57.8 58.2 0.0 0.0 0.374743 127591 127710 1113-1113 0.500000 57.0 ycf1_p2 ycf1 2 TCCATCGCTTCGAATCGAAA TCGTCGTGGTTGGACTCTAT 20 20 45.0 50.0 57.7 58.2 25.5 0.0 0.457114 127591 127710 1059-1059 0.500000 56.3 ycf1_p3 ycf1 3 TTCCATCGCTTCGAATCGAA TCGTCGTGGTTGGACTCTAT 20 20 45.0 50.0 57.7 58.2 25.5 0.0 0.457114 127591 127710 1060-1060 0.500000 56.3 ycf1_p4 ycf1 4 CGGTGGATACCTCTTGTTCC TCGTCGTGGTTGGACTCTAT 20 20 55.0 50.0 57.7 58.2 0.0 0.0 0.480845 127591 127710 780-780 0.500000 56.2 ycf1_p5 ycf1 5 AATGGGCGATGGTATTCTGC TCGTCGTGGTTGGACTCTAT 20 20 50.0 50.0 58.4 58.2 0.0 0.0 0.560513 127591 127710 659-659 0.500000 55.5