Hotspot

psbL-psbF

LSC · 60523-60544 · 22 bp

Back to Triniochloa

Pi 0.0455

MarkerSeek score 69.70

Primer available yes

Label psbL-psbF

Feature Metadata

label_name: psbL-psbF
feature_type: igs
region: LSC
length_bp: 22
variable_sites: 1
pi: 0.0455
unique_haplotype_count: 2
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 69.70

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
psbL-psbF_p1	CATTCGGGTTTGATTGTGTCA	CTGGCTATTCACGGACTAGC	42.9	55.0	57.1	57.9	122 bp	1.0	64.2
psbL-psbF_p2	CATTCGGGTTTGATTGTGTCA	GCTGGCTATTCACGGACTAG	42.9	55.0	57.1	57.9	123 bp	1.0	64.2
psbL-psbF_p3	CATTCGGGTTTGATTGTGTCA	GGCTATTCACGGACTAGCTG	42.9	55.0	57.1	57.9	120 bp	1.0	64.2
psbL-psbF_p4	CATTCGGGTTTGATTGTGTCA	TTCACGGACTAGCTGTACCT	42.9	50.0	57.1	57.8	115 bp	1.0	63.7
psbL-psbF_p5	CATTCGGGTTTGATTGTGTCA	TGGCTATTCACGGACTAGCT	42.9	50.0	57.1	58.2	121 bp	1.0	63.6