feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 41 115 -1 75 LSC 0.000000 0 0 8 48 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_001 igs trnH|psbA trnH-psbA 116 285 0 170 LSC 0.014173 12 20 83 117 no 0.714286 12 0.833333 0.013066 0.917647 56.500000 psbA gene psbA psbA 286 1347 -1 1062 LSC 0.001438 7 0 94 66 no 0.285714 6 0.666667 0.001438 1.000000 36.800000 IGS_002 igs psbA|trnK psbA-trnK 1348 1649 0 302 LSC 0.006331 9 12 300 159 no 0.428571 9 0.666667 0.006422 0.976821 49.400000 trnK_part2 tRNA trnK trnK 1650 1684 -1 35 LSC 0.000000 0 0 26 124 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 matK gene matK matK 1952 3466 -1 1515 LSC 0.007979 47 0 14 2 no 0.714286 12 0.833333 0.007979 1.000000 46.000000 IGS_005 igs matK|trnK matK-trnK 3467 4183 0 717 LSC 0.006125 17 15 86 21 no 0.714286 12 0.833333 0.005755 0.998605 48.200000 trnK_part1 tRNA trnK trnK 4184 4220 -1 37 LSC 0.009801 1 0 198 47 no 0.000000 2 0.000000 0.009801 1.000000 30.100000 IGS_006 igs trnK|rps16 trnK-rps16 4221 5157 0 937 LSC 0.023829 74 121 15 33 yes 0.857143 13 0.923077 0.022629 0.990395 68.200000 rps16 gene rps16 rps16 5158 6249 -1 1092 LSC 0.007356 32 7 1 7 no 0.857143 13 0.923077 0.007376 0.998168 48.800000 IGS_007 igs rps16|trnQ rps16-trnQ 6250 7572 0 1323 LSC 0.020231 111 108 90 272 yes 1.000000 14 1.000000 0.020280 1.000000 76.000000 trnQ tRNA trnQ trnQ 7573 7645 -1 73 LSC 0.000000 0 0 84 199 no 0.000000 1 0.000000 0.000000 1.000000 25.100000 IGS_008 igs trnQ|psbK trnQ-psbK 7646 8021 0 376 LSC 0.010866 16 12 157 38 no 0.571429 11 0.727273 0.010370 1.000000 47.900000 psbK gene psbK psbK 8022 8207 1 186 LSC 0.002718 2 0 52 6 no 0.071429 3 0.333333 0.002718 1.000000 23.100000 IGS_009 igs psbK|psbI psbK-psbI 8208 8582 0 375 LSC 0.023414 25 2 147 118 yes 0.714286 12 0.833333 0.023469 1.000000 62.100000 psbI gene psbI psbI 8583 8693 1 111 LSC 0.001287 1 1 77 7 no 0.071429 3 0.333333 0.001289 1.000000 23.400000 IGS_010 igs psbI|trnS psbI-trnS 8694 8800 0 107 LSC 0.037794 13 11 188 133 yes 0.500000 9 0.777778 0.036870 0.981308 73.100000 trnS tRNA trnS trnS 8801 8888 1 88 LSC 0.000000 0 0 73 45 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 IGS_011 igs trnS|trnG trnS-trnG 8889 9667 0 779 LSC 0.013232 37 50 161 46 no 0.857143 13 0.923077 0.012850 0.987163 62.200000 trnG_part1 tRNA trnG trnG 9668 9690 1 23 LSC 0.000000 0 0 25 23 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 trnG_part2 tRNA trnG trnG 10379 10426 1 48 LSC 0.000000 0 0 87 36 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_014 igs trnG|trnR trnG-trnR 10427 10648 0 222 LSC 0.022919 22 32 135 73 yes 0.857143 13 0.923077 0.023198 0.950450 67.200000 trnR tRNA trnR trnR 10649 10720 1 72 LSC 0.000000 0 0 33 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_015 igs trnR|atpA trnR-atpA 10721 11244 0 524 LSC 0.031232 57 23 105 186 yes 0.857143 13 0.923077 0.030078 0.998092 79.100000 atpA gene atpA atpA 11245 12768 -1 1524 LSC 0.003562 20 0 15 19 no 0.214286 7 0.428571 0.003562 1.000000 33.300000 IGS_016 igs atpA|atpF atpA-atpF 12769 12834 0 66 LSC 0.025907 4 6 17 187 no 0.142857 5 0.400000 0.019459 0.924242 45.700000 atpF gene atpF atpF 12835 14151 -1 1317 LSC 0.006438 35 75 33 14 no 0.857143 13 0.923077 0.005780 0.949127 53.000000 IGS_017 igs atpF|atpH atpF-atpH 14152 14479 0 328 LSC 0.007743 12 20 170 195 yes 1.000000 14 1.000000 0.006822 1.000000 64.800000 atpH gene atpH atpH 14480 14725 -1 246 LSC 0.003350 3 0 233 148 no 0.142857 4 0.500000 0.003350 1.000000 35.600000 IGS_018 igs atpH|atpI atpH-atpI 14726 15687 0 962 LSC 0.009772 35 29 50 24 no 1.000000 14 1.000000 0.009173 0.989605 57.700000 atpI gene atpI atpI 15688 16431 -1 744 LSC 0.005317 11 0 144 107 no 0.142857 6 0.333333 0.005317 1.000000 39.900000 IGS_019 igs atpI|rps2 atpI-rps2 16432 16641 0 210 LSC 0.014181 13 1 7 300 no 0.642857 11 0.818182 0.014196 1.000000 46.000000 rps2 gene rps2 rps2 16642 17352 -1 711 LSC 0.002365 9 0 25 137 no 0.357143 7 0.714286 0.002365 1.000000 36.200000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 17353 17561 0 209 LSC 0.005258 6 10 300 61 no 0.142857 6 0.333333 0.005397 0.995215 37.600000 rpoC2 gene rpoC2 rpoC2 17562 21731 -1 4170 LSC 0.006159 94 0 24 134 no 1.000000 14 1.000000 0.006159 1.000000 46.200000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 21732 21912 0 181 LSC 0.003825 4 2 81 24 no 0.357143 6 0.833333 0.003834 1.000000 33.100000 rpoC1 gene rpoC1 rpoC1 21913 24710 -1 2798 LSC 0.004527 48 13 46 142 no 0.857143 13 0.923077 0.004359 0.996783 46.500000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 24711 24736 0 26 LSC 0.005495 1 0 80 116 no 0.071429 2 0.500000 0.005495 1.000000 33.400000 rpoB gene rpoB rpoB 24737 27949 -1 3213 LSC 0.003283 42 0 106 17 no 1.000000 14 1.000000 0.003284 1.000000 44.700000 IGS_023 igs rpoB|trnC rpoB-trnC 27950 29118 0 1169 LSC 0.011448 55 229 3 136 no 1.000000 14 1.000000 0.010763 0.992301 60.100000 trnC tRNA trnC trnC 29119 29190 1 72 LSC 0.001984 1 0 76 64 no 0.071429 2 0.500000 0.001984 1.000000 27.500000 IGS_024 igs trnC|petN trnC-petN 29191 30091 0 901 LSC 0.020323 60 35 148 122 yes 1.000000 14 1.000000 0.019362 0.993341 74.900000 petN gene petN petN 30092 30181 1 90 LSC 0.000000 0 0 129 32 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_025 igs petN|psbM petN-psbM 30182 31101 0 920 LSC 0.011489 37 17 219 15 no 0.428571 10 0.600000 0.011442 0.990217 46.200000 psbM gene psbM psbM 31102 31206 -1 105 LSC 0.006384 2 0 15 281 no 0.071429 3 0.333333 0.006384 1.000000 26.500000 IGS_026 igs psbM|trnD psbM-trnD 31207 31968 0 762 LSC 0.008078 30 11 89 264 no 0.857143 13 0.923077 0.008059 0.998688 58.000000 trnD tRNA trnD trnD 31969 32042 -1 74 LSC 0.000000 0 0 2 190 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_027 igs trnD|trnY trnD-trnY 32043 32357 0 315 LSC 0.012537 16 11 76 96 no 0.571429 10 0.800000 0.012354 0.984127 51.100000 trnY tRNA trnY trnY 32358 32441 -1 84 LSC 0.000000 0 0 46 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_028 igs trnY|trnE trnY-trnE 32442 32500 0 59 LSC 0.009251 2 5 130 206 no 0.071429 4 0.250000 0.008602 1.000000 44.300000 trnE tRNA trnE trnE 32501 32573 -1 73 LSC 0.000000 0 0 24 133 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_029 igs trnE|trnT trnE-trnT 32574 33507 0 934 LSC 0.018833 58 151 97 164 yes 1.000000 14 1.000000 0.017965 0.977516 72.400000 trnT tRNA trnT trnT 33508 33579 -1 72 LSC 0.000000 0 0 5 92 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_030 igs trnT|psbD trnT-psbD 33580 34661 0 1082 LSC 0.016394 67 47 77 242 yes 1.000000 14 1.000000 0.016364 0.993530 69.700000 psbD gene psbD psbD 34662 35723 1 1062 LSC 0.001428 7 0 90 300 no 0.214286 6 0.500000 0.001428 1.000000 37.200000 psbC gene psbC psbC 35707 37092 1 1386 LSC 0.001181 7 0 115 16 no 0.285714 7 0.571429 0.001181 1.000000 32.700000 IGS_032 igs psbC|trnS psbC-trnS 37093 37328 0 236 LSC 0.013364 15 7 48 38 no 0.642857 11 0.818182 0.013320 1.000000 51.300000 trnS tRNA trnS trnS 37329 37421 -1 93 LSC 0.005317 1 0 37 6 no 0.000000 2 0.000000 0.005317 1.000000 22.900000 IGS_033 igs trnS|psbZ trnS-psbZ 37422 37775 0 354 LSC 0.009095 15 4 54 213 no 0.500000 10 0.700000 0.009107 1.000000 44.100000 psbZ gene psbZ psbZ 37776 37964 1 189 LSC 0.000756 1 0 68 24 no 0.071429 2 0.500000 0.000756 1.000000 22.900000 IGS_034 igs psbZ|trnG psbZ-trnG 37965 38502 0 538 LSC 0.025580 40 102 257 71 yes 1.000000 14 1.000000 0.018560 0.925651 71.500000 IGS_035 igs trnG|trnM trnG-trnM 38574 38769 0 196 LSC 0.029323 14 10 80 207 no 0.428571 10 0.600000 0.030522 0.964286 60.100000 trnM tRNA trnM trnM 38770 38843 -1 74 LSC 0.000000 0 0 8 133 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_036 igs trnM|rps14 trnM-rps14 38844 38992 0 149 LSC 0.005531 3 0 82 38 no 0.142857 4 0.500000 0.005531 1.000000 29.300000 rps14 gene rps14 rps14 38993 39295 -1 303 LSC 0.002249 2 0 15 296 no 0.071429 3 0.333333 0.002249 1.000000 23.100000 IGS_037 igs rps14|psaB rps14-psaB 39296 39417 0 122 LSC 0.000000 0 0 264 174 no 0.000000 1 0.000000 0.000000 1.000000 31.800000 psaB gene psaB psaB 39418 41622 -1 2205 LSC 0.002601 21 0 300 124 no 0.500000 10 0.700000 0.002601 1.000000 44.600000 IGS_038 igs psaB|psaA psaB-psaA 41623 41647 0 25 LSC 0.000000 0 0 80 99 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 psaA gene psaA psaA 41648 43900 -1 2253 LSC 0.003258 24 0 105 300 no 0.714286 11 0.909091 0.003258 1.000000 47.500000 IGS_039 igs psaA|ycf3 psaA-ycf3 43901 44643 0 743 LSC 0.012276 41 35 29 156 yes 1.000000 14 1.000000 0.012369 0.967699 63.000000 ycf3 gene ycf3 ycf3 44644 46645 -1 2002 LSC 0.005888 36 16 105 34 no 0.642857 11 0.818182 0.005123 0.993007 44.200000 IGS_040 igs ycf3|trnS ycf3-trnS 46646 47261 0 616 LSC 0.013632 28 225 185 99 yes 0.857143 13 0.923077 0.013126 0.996753 65.600000 trnS tRNA trnS trnS 47262 47348 1 87 LSC 0.000000 0 0 3 12 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_041 igs trnS|rps4 trnS-rps4 47349 47640 0 292 LSC 0.007163 7 10 90 170 no 0.285714 7 0.571429 0.005285 0.965753 40.400000 rps4 gene rps4 rps4 47641 48246 -1 606 LSC 0.003409 10 0 124 83 no 0.214286 6 0.500000 0.003409 1.000000 38.800000 IGS_042 igs rps4|trnT rps4-trnT 48247 48589 0 343 LSC 0.016596 20 0 300 108 no 0.500000 10 0.700000 0.016596 1.000000 51.900000 trnT tRNA trnT trnT 48590 48662 -1 73 LSC 0.000000 0 0 20 35 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_043 igs trnT|trnL trnT-trnL 48663 49638 0 976 LSC 0.018854 59 144 93 144 yes 0.785714 12 0.916667 0.016659 0.857582 64.500000 trnL_part1 tRNA trnL trnL 49639 49673 1 35 LSC 0.000000 0 0 28 109 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 trnL_part2 tRNA trnL trnL 50189 50238 1 50 LSC 0.002857 1 0 82 23 no 0.071429 2 0.500000 0.002857 1.000000 25.600000 IGS_046 igs trnL|trnF trnL-trnF 50239 50609 0 371 LSC 0.016676 21 1 132 92 no 0.642857 11 0.818182 0.016688 1.000000 54.100000 trnF tRNA trnF trnF 50610 50682 1 73 LSC 0.000000 0 0 135 19 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_047 igs trnF|ndhJ trnF-ndhJ 50683 51378 0 696 LSC 0.018981 45 64 208 95 yes 0.857143 13 0.923077 0.018090 0.991379 70.500000 ndhJ gene ndhJ ndhJ 51379 51855 -1 477 LSC 0.004285 8 0 1 24 no 0.214286 6 0.500000 0.004285 1.000000 30.600000 IGS_048 igs ndhJ|ndhK ndhJ-ndhK 51856 51969 0 114 LSC 0.014652 10 0 182 207 no 0.285714 7 0.571429 0.014652 1.000000 55.300000 ndhK gene ndhK ndhK 51970 52650 -1 681 LSC 0.001162 4 0 83 230 no 0.142857 4 0.500000 0.001162 1.000000 35.200000 IGS_049 igs ndhK|ndhC ndhK-ndhC 52651 52692 0 42 LSC 0.000000 0 0 300 188 no 0.000000 1 0.000000 0.000000 1.000000 32.900000 ndhC gene ndhC ndhC 52693 53055 -1 363 LSC 0.003663 6 0 300 67 no 0.214286 6 0.500000 0.003663 1.000000 32.800000 IGS_050 igs ndhC|trnV ndhC-trnV 53056 53774 0 719 LSC 0.016697 47 18 75 61 no 0.714286 12 0.833333 0.016670 0.987483 61.400000 trnV_part2 tRNA trnV trnV 53775 53809 -1 35 LSC 0.000000 0 0 4 26 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 trnV_part1 tRNA trnV trnV 54417 54454 -1 38 LSC 0.000000 0 0 47 107 no 0.000000 1 0.000000 0.000000 1.000000 22.300000 IGS_053 igs trnV|trnM trnV-trnM 54455 54619 0 165 LSC 0.005994 3 0 85 90 no 0.214286 5 0.600000 0.005994 1.000000 34.100000 trnM tRNA trnM trnM 54620 54692 1 73 LSC 0.000000 0 0 33 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_054 igs trnM|atpE trnM-atpE 54693 54867 0 175 LSC 0.024929 14 16 106 16 no 0.428571 8 0.750000 0.017990 0.965714 54.200000 atpE gene atpE atpE 54868 55278 -1 411 LSC 0.006524 10 0 24 269 no 0.285714 8 0.500000 0.006524 1.000000 34.200000 atpB gene atpB atpB 55275 56771 -1 1497 LSC 0.003127 19 15 61 3 no 0.714286 11 0.909091 0.003131 1.000000 42.800000 IGS_056 igs atpB|rbcL atpB-rbcL 56772 57557 0 786 LSC 0.008105 27 13 58 300 no 1.000000 14 1.000000 0.008118 0.992366 57.700000 rbcL gene rbcL rbcL 57558 58985 1 1428 LSC 0.004502 21 0 86 1 no 0.714286 12 0.833333 0.004502 1.000000 42.300000 IGS_057 igs rbcL|accD rbcL-accD 58986 59685 0 700 LSC 0.007861 21 46 12 97 no 0.857143 13 0.923077 0.007912 0.991429 55.100000 accD gene accD accD 59686 61155 1 1470 LSC 0.004052 25 0 167 6 no 0.571429 11 0.727273 0.004052 1.000000 40.100000 IGS_058 igs accD|psaI accD-psaI 61156 61866 0 711 LSC 0.008495 25 17 78 117 no 0.857143 13 0.923077 0.008193 0.998594 58.000000 psaI gene psaI psaI 61867 61980 1 114 LSC 0.000000 0 0 266 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_059 igs psaI|ycf4 psaI-ycf4 61981 62396 0 416 LSC 0.020921 29 10 300 101 no 0.571429 11 0.727273 0.021020 1.000000 60.500000 ycf4 gene ycf4 ycf4 62397 62951 1 555 LSC 0.004138 8 0 4 4 no 0.214286 8 0.375000 0.004138 1.000000 32.000000 IGS_060 igs ycf4|cemA ycf4-cemA 62952 63372 0 421 LSC 0.012609 20 45 144 182 no 0.571429 11 0.727273 0.012354 1.000000 60.200000 cemA gene cemA cemA 63373 64062 1 690 LSC 0.002054 4 0 91 6 no 0.142857 6 0.333333 0.002054 1.000000 29.800000 IGS_061 igs cemA|petA cemA-petA 64063 64254 0 192 LSC 0.010932 7 0 75 227 no 0.214286 8 0.375000 0.010932 1.000000 37.900000 petA gene petA petA 64255 65217 1 963 LSC 0.002864 14 0 85 62 no 0.428571 8 0.750000 0.002864 1.000000 40.800000 IGS_062 igs petA|psbJ petA-psbJ 65218 65739 0 522 LSC 0.012189 23 2 99 300 no 0.571429 11 0.727273 0.012209 1.000000 53.000000 psbJ gene psbJ psbJ 65740 65862 -1 123 LSC 0.000000 0 0 105 300 no 0.000000 1 0.000000 0.000000 1.000000 26.600000 IGS_063 igs psbJ|psbL psbJ-psbL 65863 65992 0 130 LSC 0.001099 1 0 228 252 no 0.071429 2 0.500000 0.001099 1.000000 36.500000 psbL gene psbL psbL 65993 66109 -1 117 LSC 0.000000 0 0 300 135 no 0.000000 1 0.000000 0.000000 1.000000 28.900000 IGS_064 igs psbL|psbF psbL-psbF 66110 66131 0 22 LSC 0.000000 0 0 300 113 no 0.000000 1 0.000000 0.000000 1.000000 27.200000 psbF gene psbF psbF 66132 66251 -1 120 LSC 0.002198 1 0 300 300 no 0.000000 2 0.000000 0.002198 1.000000 35.800000 IGS_065 igs psbF|psbE psbF-psbE 66252 66260 0 9 LSC 0.000000 0 0 6 300 no 0.000000 1 0.000000 NA 1.000000 19.200000 psbE gene psbE psbE 66261 66512 -1 252 LSC 0.000000 0 0 15 209 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_066 igs psbE|petL psbE-petL 66513 67742 0 1230 LSC 0.015365 67 413 267 48 yes 0.857143 13 0.923077 0.015674 0.997561 63.000000 petL gene petL petL 67743 67838 1 96 LSC 0.005609 1 0 131 24 no 0.000000 2 0.000000 0.005609 1.000000 24.400000 IGS_067 igs petL|petG petL-petG 67839 68035 0 197 LSC 0.008311 8 0 47 92 no 0.285714 6 0.666667 0.008311 1.000000 36.400000 petG gene petG petG 68036 68149 1 114 LSC 0.004627 1 0 122 7 no 0.000000 2 0.000000 0.004627 1.000000 22.500000 IGS_068 igs petG|trnW petG-trnW 68150 68265 0 116 LSC 0.061576 16 0 21 145 no 0.285714 7 0.571429 0.061576 1.000000 60.700000 trnW tRNA trnW trnW 68266 68339 -1 74 LSC 0.000000 0 0 32 71 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_069 igs trnW|trnP trnW-trnP 68340 68504 0 165 LSC 0.012188 8 2 106 107 no 0.357143 8 0.625000 0.012327 0.987879 46.000000 trnP tRNA trnP trnP 68505 68578 -1 74 LSC 0.000000 0 0 55 33 no 0.000000 1 0.000000 0.000000 1.000000 21.200000 IGS_070 igs trnP|psaJ trnP-psaJ 68579 68965 0 387 LSC 0.011775 13 6 129 182 no 0.428571 9 0.666667 0.011028 0.994832 49.400000 psaJ gene psaJ psaJ 68966 69100 1 135 LSC 0.000000 0 0 13 47 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_071 igs psaJ|rpl33 psaJ-rpl33 69101 69501 0 401 LSC 0.011427 18 0 148 29 no 0.714286 12 0.833333 0.011427 1.000000 47.200000 rpl33 gene rpl33 rpl33 69502 69702 1 201 LSC 0.007162 5 0 171 81 no 0.142857 6 0.333333 0.007162 1.000000 33.800000 IGS_072 igs rpl33|rps18 rpl33-rps18 69703 69873 0 171 LSC 0.012596 13 2 114 35 no 0.071429 3 0.333333 0.012717 1.000000 39.300000 rps18 gene rps18 rps18 69874 70179 1 306 LSC 0.001796 3 0 89 20 no 0.142857 4 0.500000 0.001796 1.000000 25.100000 IGS_073 igs rps18|rpl20 rps18-rpl20 70180 70462 0 283 LSC 0.016903 17 24 270 134 no 0.571429 11 0.727273 0.016812 0.985866 60.100000 rpl20 gene rpl20 rpl20 70463 70816 -1 354 LSC 0.002328 3 0 21 31 no 0.142857 4 0.500000 0.002328 1.000000 26.200000 IGS_074 igs rpl20|rps12 rpl20-rps12 70817 71610 0 794 LSC 0.006712 22 11 219 51 no 0.714286 11 0.909091 0.006718 0.998741 50.400000 rps12_part1 gene rps12 rps12 71611 71724 -1 114 LSC 0.003567 2 0 121 72 no 0.071429 3 0.333333 0.003567 1.000000 29.300000 IGS_075 igs rps12|clpP rps12-clpP 71725 71897 0 173 LSC 0.007622 6 9 62 152 no 0.285714 8 0.500000 0.007710 0.994220 42.400000 clpP gene clpP clpP 71898 73930 -1 2033 LSC 0.009404 66 30 36 106 no 0.857143 13 0.923077 0.009145 0.999508 52.700000 IGS_076 igs clpP|psbB clpP-psbB 73931 74397 0 467 LSC 0.010260 15 20 115 221 no 0.642857 11 0.818182 0.010578 0.967880 56.000000 psbB gene psbB psbB 74398 75918 1 1521 LSC 0.003006 22 0 126 6 no 0.500000 10 0.700000 0.003006 1.000000 37.900000 IGS_077 igs psbB|psbT psbB-psbT 75919 76109 0 191 LSC 0.009608 6 0 215 293 no 0.142857 6 0.333333 0.009608 1.000000 44.700000 psbT gene psbT psbT 76110 76217 1 108 LSC 0.001323 1 0 12 185 no 0.071429 2 0.500000 0.001323 1.000000 22.700000 IGS_078 igs psbT|psbN psbT-psbN 76218 76277 0 60 LSC 0.002381 1 0 120 125 no 0.071429 2 0.500000 0.002381 1.000000 32.200000 psbN gene psbN psbN 76278 76409 -1 132 LSC 0.001998 1 0 180 300 no 0.000000 2 0.000000 0.001998 1.000000 34.100000 IGS_079 igs psbN|psbH psbN-psbH 76410 76521 0 112 LSC 0.000000 0 1 6 281 no 0.071429 2 0.500000 0.000000 1.000000 21.600000 psbH gene psbH psbH 76522 76743 1 222 LSC 0.000000 0 0 118 59 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 IGS_080 igs psbH|petB psbH-petB 76744 76872 0 129 LSC 0.007383 3 2 300 47 no 0.285714 7 0.571429 0.007439 0.984496 35.200000 petB gene petB petB 76873 78292 1 1420 LSC 0.006247 29 23 25 53 no 0.714286 12 0.833333 0.005794 0.992254 47.300000 IGS_081 igs petB|petD petB-petD 78293 78484 0 192 LSC 0.015167 14 12 300 65 no 0.214286 6 0.500000 0.015469 1.000000 49.700000 petD gene petD petD 78485 79695 1 1211 LSC 0.005771 29 0 37 14 no 0.500000 10 0.700000 0.005771 1.000000 41.000000 IGS_082 igs petD|rpoA petD-rpoA 79696 79905 0 210 LSC 0.029252 16 0 201 5 no 0.285714 8 0.500000 0.029252 1.000000 47.200000 rpoA gene rpoA rpoA 79906 80901 -1 996 LSC 0.007326 25 0 4 50 no 0.500000 10 0.700000 0.007326 1.000000 41.100000 IGS_083 igs rpoA|rps11 rpoA-rps11 80902 80968 0 67 LSC 0.014105 3 0 89 189 no 0.071429 4 0.250000 0.014105 1.000000 38.700000 rps11 gene rps11 rps11 80969 81385 -1 417 LSC 0.001976 3 0 6 98 no 0.142857 4 0.500000 0.001976 1.000000 26.100000 IGS_084 igs rps11|rpl36 rps11-rpl36 81386 81511 0 126 LSC 0.006541 3 0 227 60 no 0.142857 4 0.500000 0.006541 1.000000 31.800000 rpl36 gene rpl36 rpl36 81512 81625 -1 114 LSC 0.005687 3 0 27 181 no 0.142857 4 0.500000 0.005687 1.000000 29.300000 IGS_085 igs rpl36|rps8 rpl36-rps8 81626 82110 0 485 LSC 0.008691 22 13 53 34 no 0.857143 13 0.923077 0.008253 1.000000 54.100000 rps8 gene rps8 rps8 82111 82515 -1 405 LSC 0.004070 6 0 155 27 no 0.285714 6 0.666667 0.004070 1.000000 32.000000 IGS_086 igs rps8|rpl14 rps8-rpl14 82516 82664 0 149 LSC 0.020134 8 3 35 49 no 0.428571 9 0.666667 0.020255 1.000000 47.600000 rpl14 gene rpl14 rpl14 82665 83033 -1 369 LSC 0.002948 4 0 12 40 no 0.071429 4 0.250000 0.002948 1.000000 25.100000 IGS_087 igs rpl14|rpl16 rpl14-rpl16 83034 83181 0 148 LSC 0.012875 7 14 41 39 no 0.642857 11 0.818182 0.007774 0.959459 50.300000 rpl16 gene rpl16 rpl16 83182 84696 -1 1515 LSC 0.009713 55 119 67 25 no 1.000000 14 1.000000 0.009184 0.955776 59.300000 IGS_088 igs rpl16|rps3 rpl16-rps3 84697 84836 0 140 LSC 0.013030 4 7 12 108 no 0.285714 6 0.666667 0.013121 1.000000 40.600000 rps3 gene rps3 rps3 84837 85493 -1 657 LSC 0.005503 15 0 53 68 no 0.500000 10 0.700000 0.005503 1.000000 43.700000 rpl22 gene rpl22 rpl22 85478 85981 -1 504 LSC 0.006541 13 0 34 25 no 0.571429 10 0.800000 0.006541 1.000000 41.800000 IGS_090 igs rpl22|rps19 rpl22-rps19 85982 86046 0 65 LSC 0.005579 1 1 19 6 no 0.071429 3 0.333333 0.005587 1.000000 26.900000 rps19 gene rps19 rps19 86047 86343 -1 297 LSC 0.008929 6 7 39 32 no 0.357143 7 0.714286 0.007834 0.976431 36.700000 IGS_091 igs rps19|rpl2 rps19-rpl2 86344 86387 0 44 IRb 0.025225 3 26 17 300 no 0.214286 6 0.500000 0.026224 1.000000 48.800000 rpl2 gene rpl2 rpl2 86388 87877 -1 1490 IRb 0.000192 2 0 10 300 no 0.142857 3 0.666667 0.000192 1.000000 28.700000 IGS_092 igs rpl2|rpl23 rpl2-rpl23 87878 87895 0 18 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 87896 88177 -1 282 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_093 igs rpl23|trnI rpl23-trnI 88178 88338 0 161 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_094 igs trnI|ycf2 trnI-ycf2 88413 88500 0 88 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 88501 95349 1 6849 IRb 0.000621 17 21 300 151 no 0.500000 10 0.700000 0.000622 0.999124 40.400000 IGS_095 igs ycf2|trnL ycf2-trnL 95350 96285 0 936 IRb 0.001702 6 0 300 300 no 0.428571 8 0.750000 0.001703 1.000000 49.600000 IGS_096 igs trnL|ndhB trnL-ndhB 96367 96944 0 578 IRb 0.000741 3 0 262 87 no 0.214286 4 0.750000 0.000741 1.000000 36.100000 ndhB gene ndhB ndhB 96945 99163 -1 2219 IRb 0.000985 10 0 300 300 no 0.428571 9 0.666667 0.000985 1.000000 47.500000 IGS_097 igs ndhB|rps7 ndhB-rps7 99164 99491 0 328 IRb 0.000436 1 9 300 300 no 0.142857 3 0.666667 0.000436 1.000000 41.000000 rps7 gene rps7 rps7 99492 99959 -1 468 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_098 igs rps7|rps12 rps7-rps12 99960 100012 0 53 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 100013 100810 -1 798 IRb 0.000633 2 0 300 250 no 0.071429 3 0.333333 0.000633 1.000000 41.900000 IGS_099 igs rps12|trnV rps12-trnV 100811 102077 0 1267 IRb 0.000980 7 10 300 81 no 0.500000 8 0.875000 0.000982 1.000000 42.500000 IGS_100 igs trnV|rrn16 trnV-rrn16 102150 102376 0 227 IRb 0.003728 3 0 300 300 no 0.071429 4 0.250000 0.003728 1.000000 38.400000 rrn16 rRNA rrn16 rrn16 102377 103868 1 1492 IRb 0.000096 1 0 207 300 no 0.071429 2 0.500000 0.000096 1.000000 41.500000 IGS_101 igs rrn16|trnI rrn16-trnI 103869 104163 0 295 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 104164 104200 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 105159 105193 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_104 igs trnI|trnA trnI-trnA 105194 105265 0 72 IRb 0.001984 1 0 300 300 no 0.071429 2 0.500000 0.001984 1.000000 37.700000 trnA_part1 tRNA trnA trnA 105266 105303 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 106106 106140 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_107 igs trnA|rrn23 trnA-rrn23 106141 106292 0 152 IRb 0.000940 1 0 300 300 no 0.071429 2 0.500000 0.000940 1.000000 36.300000 rrn23 rRNA rrn23 rrn23 106293 109102 1 2810 IRb 0.000188 2 0 300 300 no 0.000000 2 0.000000 0.000188 1.000000 37.400000 IGS_108 igs rrn23|rrn4.5 rrn23-rrn4.5 109103 109200 0 98 IRb 0.002915 2 4 300 244 no 0.214286 4 0.750000 0.002925 1.000000 46.600000 rrn4.5 rRNA rrn4.5 rrn4.5 109201 109303 1 103 IRb 0.000000 0 0 300 141 no 0.000000 1 0.000000 0.000000 1.000000 29.300000 IGS_109 igs rrn4.5|rrn5 rrn4.5-rrn5 109304 109562 0 259 IRb 0.002079 1 5 300 172 no 0.142857 4 0.500000 0.002085 1.000000 38.100000 rrn5 rRNA rrn5 rrn5 109563 109683 1 121 IRb 0.000000 0 0 117 51 no 0.000000 1 0.000000 0.000000 1.000000 22.600000 IGS_110 igs rrn5|trnR rrn5-trnR 109684 109947 0 264 IRb 0.006115 6 9 238 145 no 0.428571 8 0.750000 0.004762 0.973485 46.700000 trnR tRNA trnR trnR 109948 110021 1 74 IRb 0.000000 0 0 196 71 no 0.000000 1 0.000000 0.000000 1.000000 24.100000 IGS_111 igs trnR|trnN trnR-trnN 110022 110640 0 619 IRb 0.008220 13 0 270 171 no 0.428571 9 0.666667 0.008220 1.000000 52.200000 trnN tRNA trnN trnN 110641 110712 -1 72 IRb 0.000000 0 0 19 99 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_112 igs trnN|ycf1 trnN-ycf1 110713 111050 0 338 IRb 0.005991 5 17 91 11 no 0.142857 5 0.400000 0.005991 0.949704 31.800000 ycf1 gene ycf1 ycf1 111051 112241 1 1191 IRb 0.002731 13 0 56 4 no 0.428571 9 0.666667 0.002731 1.000000 35.900000 ndhF gene ndhF ndhF 112228 114474 -1 2247 SSC 0.012911 109 0 15 14 no 0.857143 13 0.923077 0.012911 1.000000 52.400000 IGS_114 igs ndhF|rpl32 ndhF-rpl32 114475 115141 0 667 SSC 0.026289 61 63 207 77 yes 0.857143 13 0.923077 0.025949 0.982009 75.500000 rpl32 gene rpl32 rpl32 115142 115303 1 162 SSC 0.009700 5 2 26 5 no 0.071429 4 0.250000 0.009773 1.000000 30.200000 IGS_115 igs rpl32|trnL rpl32-trnL 115304 116379 0 1076 SSC 0.032667 138 342 9 93 yes 1.000000 14 1.000000 0.031228 0.986059 76.100000 IGS_116 igs trnL|ccsA trnL-ccsA 116460 116561 0 102 SSC 0.021116 7 1 163 50 no 0.214286 7 0.428571 0.021140 1.000000 45.800000 ccsA gene ccsA ccsA 116562 117539 1 978 SSC 0.012964 39 10 18 65 no 0.571429 11 0.727273 0.012964 0.989775 48.700000 IGS_117 igs ccsA|ndhD ccsA-ndhD 117540 117795 0 256 SSC 0.017557 23 1 42 148 no 0.642857 11 0.818182 0.017571 1.000000 53.600000 ndhD gene ndhD ndhD 117796 119316 -1 1521 SSC 0.005144 29 0 31 33 no 0.714286 12 0.833333 0.005144 1.000000 45.400000 IGS_118 igs ndhD|psaC ndhD-psaC 119317 119442 0 126 SSC 0.015786 6 0 166 151 no 0.214286 6 0.500000 0.015786 1.000000 47.100000 psaC gene psaC psaC 119443 119688 -1 246 SSC 0.002234 3 0 56 71 no 0.142857 4 0.500000 0.002234 1.000000 28.200000 IGS_119 igs psaC|ndhE psaC-ndhE 119689 119937 0 249 SSC 0.015932 14 1 94 84 no 0.428571 9 0.666667 0.015990 0.995984 47.700000 ndhE gene ndhE ndhE 119938 120243 -1 306 SSC 0.005207 6 0 21 83 no 0.285714 7 0.571429 0.005207 1.000000 30.600000 IGS_120 igs ndhE|ndhG ndhE-ndhG 120244 120468 0 225 SSC 0.008987 9 1 134 5 no 0.428571 9 0.666667 0.008990 1.000000 36.800000 ndhG gene ndhG ndhG 120469 120999 -1 531 SSC 0.007160 12 0 58 26 no 0.285714 7 0.571429 0.007160 1.000000 36.900000 IGS_121 igs ndhG|ndhI ndhG-ndhI 121000 121375 0 376 SSC 0.014336 22 42 230 0 no 0.571429 11 0.727273 0.014589 0.986702 50.300000 ndhI gene ndhI ndhI 121376 121870 -1 495 SSC 0.007570 16 0 84 300 no 0.500000 9 0.777778 0.007570 1.000000 45.900000 IGS_122 igs ndhI|ndhA ndhI-ndhA 121871 121950 0 80 SSC 0.003571 2 0 155 300 no 0.142857 3 0.666667 0.003571 1.000000 37.800000 ndhA gene ndhA ndhA 121951 124191 -1 2241 SSC 0.006138 55 23 235 112 no 0.857143 13 0.923077 0.006096 0.997323 54.900000 IGS_123 igs ndhA|ndhH ndhA-ndhH 124192 124192 0 1 SSC 0.000000 0 0 182 111 no 0.000000 1 0.000000 NA 1.000000 27.100000 ndhH gene ndhH ndhH 124193 125374 -1 1182 SSC 0.005104 25 0 183 16 no 0.428571 10 0.600000 0.005104 1.000000 39.200000 IGS_124 igs ndhH|rps15 ndhH-rps15 125375 125477 0 103 SSC 0.022618 6 4 33 25 no 0.142857 5 0.400000 0.022534 1.000000 45.500000 rps15 gene rps15 rps15 125478 125750 -1 273 SSC 0.003502 5 0 3 10 no 0.214286 5 0.600000 0.003502 1.000000 26.900000 IGS_125 igs rps15|ycf1 rps15-ycf1 125751 126148 0 398 SSC 0.030287 39 30 80 99 yes 0.714286 12 0.833333 0.027945 0.972362 71.300000 ycf1 gene ycf1 ycf1 126149 131686 -1 5538 SSC 0.011970 242 99 28 56 yes 0.857143 13 0.923077 0.012015 1.000000 49.900000 IGS_126 igs ycf1|trnN ycf1-trnN 131687 132024 0 338 IRa 0.006231 5 338 11 91 no 0.214286 6 0.500000 0.006231 0.949704 31.100000 trnN tRNA trnN trnN 132025 132096 1 72 IRa 0.000000 0 72 99 19 no 0.071429 2 0.500000 0.000000 1.000000 25.500000 IGS_127 igs trnN|trnR trnN-trnR 132097 132715 0 619 IRa 0.008409 13 619 171 270 no 0.500000 10 0.700000 0.008409 1.000000 57.600000 trnR tRNA trnR trnR 132716 132789 -1 74 IRa 0.000000 0 74 71 196 no 0.071429 2 0.500000 0.000000 1.000000 29.400000 IGS_128 igs trnR|rrn5 trnR-rrn5 132790 133053 0 264 IRa 0.004274 4 264 145 238 no 0.500000 9 0.777778 0.004365 0.973485 46.100000 rrn5 rRNA rrn5 rrn5 133054 133174 -1 121 IRa 0.000000 0 121 51 117 no 0.071429 2 0.500000 0.000000 1.000000 27.900000 IGS_129 igs rrn5|rrn4.5 rrn5-rrn4.5 133175 133433 0 259 IRa 0.002079 1 259 172 300 no 0.214286 5 0.600000 0.002085 1.000000 41.100000 rrn4.5 rRNA rrn4.5 rrn4.5 133434 133536 -1 103 IRa 0.000000 0 103 141 300 no 0.071429 2 0.500000 0.000000 1.000000 34.700000 IGS_130 igs rrn4.5|rrn23 rrn4.5-rrn23 133537 133634 0 98 IRa 0.003140 2 98 244 300 no 0.285714 5 0.800000 0.003151 1.000000 47.000000 rrn23 rRNA rrn23 rrn23 133635 136444 -1 2810 IRa 0.000201 2 2810 300 300 no 0.071429 3 0.333333 0.000201 1.000000 42.800000 IGS_131 igs rrn23|trnA rrn23-trnA 136445 136596 0 152 IRa 0.001012 1 152 300 300 no 0.142857 3 0.666667 0.001012 1.000000 41.700000 trnA_part2 tRNA trnA trnA 136597 136631 -1 35 IRa 0.000000 0 35 300 300 no 0.071429 2 0.500000 0.000000 1.000000 39.100000 trnA_part1 tRNA trnA trnA 137434 137471 -1 38 IRa 0.000000 0 38 300 300 no 0.071429 2 0.500000 0.000000 1.000000 39.100000 IGS_134 igs trnA|trnI trnA-trnI 137472 137543 0 72 IRa 0.002137 1 72 300 300 no 0.142857 3 0.666667 0.002137 1.000000 43.100000 trnI_part2 tRNA trnI trnI 137544 137578 -1 35 IRa 0.000000 0 35 300 300 no 0.071429 2 0.500000 0.000000 1.000000 39.100000 trnI_part1 tRNA trnI trnI 138537 138573 -1 37 IRa 0.000000 0 37 300 300 no 0.071429 2 0.500000 0.000000 1.000000 39.100000 IGS_137 igs trnI|rrn16 trnI-rrn16 138574 138869 0 296 IRa 0.000000 0 296 300 300 no 0.071429 2 0.500000 0.000000 1.000000 39.100000 rrn16 rRNA rrn16 rrn16 138870 140360 -1 1491 IRa 0.000103 1 1491 300 207 no 0.142857 3 0.666667 0.000103 1.000000 46.800000 IGS_138 igs rrn16|trnV rrn16-trnV 140361 140588 0 228 IRa 0.003936 3 228 300 300 no 0.142857 5 0.400000 0.003936 1.000000 43.900000 IGS_139 igs trnV|rps12 trnV-rps12 140661 141926 0 1266 IRa 0.001053 7 1266 82 300 no 0.571429 9 0.888889 0.001055 1.000000 47.000000 rps12_part2 gene rps12 rps12 141927 142724 1 798 IRa 0.000675 2 798 250 300 no 0.142857 4 0.500000 0.000675 1.000000 47.300000 IGS_140 igs rps12|rps7 rps12-rps7 142725 142777 0 53 IRa 0.000000 0 53 300 300 no 0.071429 2 0.500000 0.000000 1.000000 39.100000 rps7 gene rps7 rps7 142778 143245 1 468 IRa 0.000000 0 468 300 300 no 0.071429 2 0.500000 0.000000 1.000000 42.600000 IGS_141 igs rps7|ndhB rps7-ndhB 143246 143573 0 328 IRa 0.000469 1 328 300 300 no 0.142857 3 0.666667 0.000469 1.000000 41.600000 ndhB gene ndhB ndhB 143574 145792 1 2219 IRa 0.000982 10 2219 300 300 no 0.428571 9 0.666667 0.000982 1.000000 51.600000 IGS_142 igs ndhB|trnL ndhB-trnL 145793 146370 0 578 IRa 0.000799 3 578 300 262 no 0.285714 5 0.800000 0.000799 1.000000 49.900000 IGS_143 igs trnL|ycf2 trnL-ycf2 146452 147387 0 936 IRa 0.001781 6 936 300 300 no 0.500000 9 0.777778 0.001781 1.000000 55.000000 ycf2 gene ycf2 ycf2 147388 154236 -1 6849 IRa 0.000644 17 6849 151 300 no 0.571429 11 0.727273 0.000645 0.999124 45.400000 IGS_144 igs ycf2|trnI ycf2-trnI 154237 154324 0 88 IRa 0.000000 0 88 300 300 no 0.071429 2 0.500000 0.000000 1.000000 39.100000 IGS_145 igs trnI|rpl23 trnI-rpl23 154399 154559 0 161 IRa 0.000000 0 161 300 300 no 0.071429 2 0.500000 0.000000 1.000000 39.100000 rpl23 gene rpl23 rpl23 154560 154841 1 282 IRa 0.000000 0 282 300 300 no 0.071429 2 0.500000 0.000000 1.000000 39.100000 IGS_146 igs rpl23|rpl2 rpl23-rpl2 154842 154859 0 18 IRa 0.000000 0 18 300 300 no 0.071429 2 0.500000 NA 1.000000 39.100000 rpl2 gene rpl2 rpl2 154860 156349 1 1490 IRa 0.000207 2 1490 300 10 no 0.214286 4 0.750000 0.000207 1.000000 34.000000 IGS_147 igs rpl2|trnH rpl2-trnH 156350 40 0 104 IRa 0.023158 8 64 300 123 no 0.714286 12 0.833333 0.022234 0.932692 63.900000