feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score matK gene matK matK 1453 2685 -1 1233 LSC 0.014599 27 0 4 93 no 1.000000 3 1.000000 0.014599 1.000000 53.400000 IGS_001 igs matK|rps16 matK-rps16 2686 3643 0 958 LSC 0.020202 29 2 12 114 yes 1.000000 3 1.000000 0.020218 0.998956 57.700000 rps16 gene rps16 rps16 3644 4705 -1 1062 LSC 0.013573 21 12 32 71 no 1.000000 3 1.000000 0.013625 0.994350 55.900000 IGS_002 igs rps16|chlB rps16-chlB 4706 4864 0 159 LSC 0.008386 2 0 67 121 no 1.000000 3 1.000000 0.008386 1.000000 47.900000 chlB gene chlB chlB 4865 5728 -1 864 LSC 0.008488 11 0 75 160 no 1.000000 3 1.000000 0.008488 1.000000 54.800000 IGS_003 igs chlB|trnQ-UUG chlB-trnQ-UUG 5729 6646 0 918 LSC 0.011256 14 7 29 91 no 1.000000 3 1.000000 0.009849 1.000000 53.800000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 6647 6718 -1 72 LSC 0.000000 0 0 54 19 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_004 igs trnQ-UUG|psbK trnQ-UUG-psbK 6719 7044 0 326 LSC 0.016360 8 0 126 113 no 1.000000 3 1.000000 0.016360 1.000000 56.900000 psbK gene psbK psbK 7045 7221 1 177 LSC 0.003766 1 0 132 35 no 0.333333 2 0.500000 0.003766 1.000000 30.000000 IGS_005 igs psbK|psbI psbK-psbI 7222 7755 0 534 LSC 0.026217 21 0 63 193 yes 1.000000 3 1.000000 0.026217 1.000000 63.800000 psbI gene psbI psbI 7756 7866 1 111 LSC 0.000000 0 0 25 82 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_006 igs psbI|trnS-GCU psbI-trnS-GCU 7867 7939 0 73 LSC 0.000000 0 0 136 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 trnS-GCU tRNA trnS-GCU trnS-GCU 7940 8027 -1 88 LSC 0.007576 1 0 209 45 no 0.333333 2 0.500000 0.007576 1.000000 33.200000 IGS_007 igs trnS-GCU|ycf12 trnS-GCU-ycf12 8028 8561 0 534 LSC 0.009988 8 0 78 56 no 1.000000 3 1.000000 0.009988 1.000000 52.900000 ycf12 gene ycf12 ycf12 8562 8663 1 102 LSC 0.006536 1 0 63 11 no 0.333333 2 0.500000 0.006536 1.000000 30.000000 IGS_008 igs ycf12|trnG-UCC ycf12-trnG-UCC 8664 8838 0 175 LSC 0.030476 8 0 45 64 no 1.000000 3 1.000000 0.030476 1.000000 60.300000 trnG-UCC_part1 tRNA trnG-UCC trnG-UCC 8839 8861 1 23 LSC 0.000000 0 0 28 41 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 trnG-UCC_part2 tRNA trnG-UCC trnG-UCC 9782 9829 1 48 LSC 0.000000 0 0 17 33 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_011 igs trnG-UCC|trnR-UCU trnG-UCC-trnR-UCU 9830 9984 0 155 LSC 0.017204 4 0 65 89 no 1.000000 3 1.000000 0.017204 1.000000 53.300000 trnR-UCU tRNA trnR-UCU trnR-UCU 9985 10056 1 72 LSC 0.000000 0 0 1 17 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_012 igs trnR-UCU|atpF trnR-UCU-atpF 10057 11758 0 1702 LSC 0.006659 17 0 73 5 no 1.000000 3 1.000000 0.006659 1.000000 47.900000 atpF gene atpF atpF 11759 13133 -1 1375 LSC 0.012606 26 0 30 19 no 1.000000 3 1.000000 0.012606 1.000000 53.200000 IGS_013 igs atpF|atpH atpF-atpH 13134 13323 0 190 LSC 0.035088 10 0 72 168 yes 1.000000 3 1.000000 0.035088 1.000000 65.300000 atpH gene atpH atpH 13324 13560 -1 237 LSC 0.002813 1 0 14 40 no 0.333333 2 0.500000 0.002813 1.000000 27.800000 IGS_014 igs atpH|atpI atpH-atpI 13561 14314 0 754 LSC 0.011494 13 0 68 94 no 1.000000 3 1.000000 0.011494 1.000000 56.200000 atpI gene atpI atpI 14315 14803 -1 489 LSC 0.008180 6 0 290 45 no 1.000000 3 1.000000 0.008180 1.000000 50.000000 IGS_015 igs atpI|rpoC2 atpI-rpoC2 14804 16137 0 1334 LSC 0.012744 25 5 24 2 no 1.000000 3 1.000000 0.012279 1.000000 52.400000 rpoC2 gene rpoC2 rpoC2 16138 20040 -1 3903 LSC 0.008711 51 6 27 271 no 1.000000 3 1.000000 0.008720 1.000000 47.000000 IGS_016 igs rpoC2|trnD-GUC rpoC2-trnD-GUC 20041 27355 0 7315 LSC 0.007886 85 14 41 86 yes 1.000000 3 1.000000 0.007620 0.999727 45.800000 trnD-GUC tRNA trnD-GUC trnD-GUC 27356 27429 1 74 LSC 0.000000 0 0 25 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_017 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 27430 27486 0 57 LSC 0.035088 3 0 99 94 yes 1.000000 3 1.000000 0.035088 1.000000 66.900000 trnY-GUA tRNA trnY-GUA trnY-GUA 27487 27568 -1 82 LSC 0.000000 0 0 30 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_018 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 27569 27708 0 140 LSC 0.023810 5 0 112 110 no 1.000000 3 1.000000 0.023810 1.000000 60.900000 trnE-UUC tRNA trnE-UUC trnE-UUC 27709 27781 -1 73 LSC 0.000000 0 0 79 37 no 0.000000 1 0.000000 0.000000 1.000000 21.500000 IGS_019 igs trnE-UUC|psbM trnE-UUC-psbM 27782 28218 0 437 LSC 0.011442 7 0 152 74 no 1.000000 3 1.000000 0.011442 1.000000 53.100000 psbM gene psbM psbM 28219 28332 1 114 LSC 0.005848 1 0 208 48 no 0.333333 2 0.500000 0.005848 1.000000 32.300000 IGS_020 igs psbM|petN psbM-petN 28333 29204 0 872 LSC 0.016820 22 0 39 32 no 1.000000 3 1.000000 0.016820 1.000000 56.900000 petN gene petN petN 29205 29321 -1 117 LSC 0.011396 2 0 12 52 no 0.333333 2 0.500000 0.011396 1.000000 33.200000 IGS_021 igs petN|trnC-GCA petN-trnC-GCA 29322 29769 0 448 LSC 0.017857 12 0 71 74 no 1.000000 3 1.000000 0.017857 1.000000 57.300000 trnC-GCA tRNA trnC-GCA trnC-GCA 29770 29841 -1 72 LSC 0.000000 0 0 34 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_022 igs trnC-GCA|trnG-GCC trnC-GCA-trnG-GCC 29842 30286 0 445 LSC 0.023221 15 25 106 101 yes 1.000000 3 1.000000 0.022533 1.000000 68.400000 trnG-GCC tRNA trnG-GCC trnG-GCC 30287 30357 -1 71 LSC 0.000000 0 0 72 30 no 0.000000 1 0.000000 0.000000 1.000000 21.000000 IGS_023 igs trnG-GCC|psbZ trnG-GCC-psbZ 30358 30624 0 267 LSC 0.033079 13 13 143 137 yes 1.000000 3 1.000000 0.033800 0.981273 73.900000 psbZ gene psbZ psbZ 30625 30813 -1 189 LSC 0.003527 1 0 64 187 no 0.333333 2 0.500000 0.003527 1.000000 32.000000 IGS_024 igs psbZ|trnS-UGA psbZ-trnS-UGA 30814 31246 0 433 LSC 0.020015 13 21 51 98 yes 1.000000 3 1.000000 0.020682 1.000000 62.400000 trnS-UGA tRNA trnS-UGA trnS-UGA 31247 31335 1 89 LSC 0.000000 0 0 4 9 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_025 igs trnS-UGA|psbC trnS-UGA-psbC 31336 31633 0 298 LSC 0.038159 15 10 93 216 yes 1.000000 3 1.000000 0.029806 0.996644 71.700000 psbC gene psbC psbC 31634 33085 -1 1452 LSC 0.005510 12 0 138 22 no 1.000000 3 1.000000 0.005510 1.000000 48.900000 psbD gene psbD psbD 33003 34064 -1 1062 LSC 0.006905 11 0 171 72 no 1.000000 3 1.000000 0.006905 1.000000 53.600000 IGS_027 igs psbD|trnT-GGU psbD-trnT-GGU 34065 35355 0 1291 LSC 0.012393 24 7 104 44 no 1.000000 3 1.000000 0.012438 1.000000 55.600000 trnT-GGU tRNA trnT-GGU trnT-GGU 35356 35427 -1 72 LSC 0.009259 1 0 58 2 no 0.333333 2 0.500000 0.009259 1.000000 31.100000 IGS_028 igs trnT-GGU|trnfM-CAU trnT-GGU-trnfM-CAU 35428 35920 0 493 LSC 0.012170 9 0 27 149 no 1.000000 3 1.000000 0.012170 1.000000 51.300000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 35921 35994 -1 74 LSC 0.000000 0 0 39 75 no 0.000000 1 0.000000 0.000000 1.000000 21.700000 IGS_029 igs trnfM-CAU|rps14 trnfM-CAU-rps14 35995 36118 0 124 LSC 0.010753 2 0 113 21 no 1.000000 3 1.000000 0.010753 1.000000 45.900000 rps14 gene rps14 rps14 36119 36421 -1 303 LSC 0.006601 3 0 43 61 no 1.000000 3 1.000000 0.006601 1.000000 45.000000 IGS_030 igs rps14|psaB rps14-psaB 36422 36638 0 217 LSC 0.021505 7 0 8 9 no 1.000000 3 1.000000 0.021505 1.000000 51.800000 psaB gene psaB psaB 36639 38855 -1 2217 LSC 0.008420 28 0 13 300 no 1.000000 3 1.000000 0.008420 1.000000 48.600000 IGS_031 igs psaB|psaA psaB-psaA 38856 38868 0 13 LSC 0.000000 0 0 200 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psaA gene psaA psaA 38869 41121 -1 2253 LSC 0.006510 22 0 213 96 no 1.000000 3 1.000000 0.006510 1.000000 53.500000 IGS_032 igs psaA|trnS-GGA psaA-trnS-GGA 41122 43626 0 2505 LSC 0.010250 38 1 73 106 no 1.000000 3 1.000000 0.010250 0.999601 53.700000 trnS-GGA tRNA trnS-GGA trnS-GGA 43627 43713 1 87 LSC 0.000000 0 0 3 19 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_033 igs trnS-GGA|trnL-UAA trnS-GGA-trnL-UAA 43714 45458 0 1745 LSC 0.014908 39 2 90 51 no 1.000000 3 1.000000 0.014913 0.999427 56.700000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 45459 45492 1 34 LSC 0.000000 0 0 22 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 46058 46108 1 51 LSC 0.000000 0 0 3 13 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_036 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 46109 46427 0 319 LSC 0.020964 10 1 54 97 no 1.000000 3 1.000000 0.020964 0.996865 55.600000 trnF-GAA tRNA trnF-GAA trnF-GAA 46428 46500 1 73 LSC 0.000000 0 0 73 24 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_037 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 46501 46727 0 227 LSC 0.029369 10 0 146 114 yes 1.000000 3 1.000000 0.029369 1.000000 64.800000 ndhJ gene ndhJ ndhJ 46728 47240 -1 513 LSC 0.003899 3 0 40 0 no 1.000000 3 1.000000 0.003899 1.000000 44.400000 IGS_038 igs ndhJ|ndhK ndhJ-ndhK 47241 47310 0 70 LSC 0.038095 4 0 116 162 yes 1.000000 3 1.000000 0.038095 1.000000 70.500000 ndhK gene ndhK ndhK 47311 48048 -1 738 LSC 0.005420 6 0 0 300 no 1.000000 3 1.000000 0.005420 1.000000 47.200000 ndhC gene ndhC ndhC 47985 48401 -1 417 LSC 0.004796 3 0 88 47 no 0.333333 2 0.500000 0.004796 1.000000 34.000000 IGS_040 igs ndhC|trnV-UAC ndhC-trnV-UAC 48402 48905 0 504 LSC 0.014667 11 4 300 80 no 1.000000 3 1.000000 0.014667 0.992063 57.800000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 48906 48945 -1 40 LSC 0.000000 0 0 53 40 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 49605 49642 -1 38 LSC 0.017544 1 0 14 13 no 0.333333 2 0.500000 0.017544 1.000000 37.200000 IGS_043 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 49643 49926 0 284 LSC 0.027578 11 15 14 93 no 1.000000 3 1.000000 0.025749 0.978873 61.000000 trnM-CAU tRNA trnM-CAU trnM-CAU 49927 49999 1 73 LSC 0.000000 0 0 30 20 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_044 igs trnM-CAU|atpE trnM-CAU-atpE 50000 50144 0 145 LSC 0.022989 5 0 103 252 no 1.000000 3 1.000000 0.022989 1.000000 59.900000 atpE gene atpE atpE 50145 50543 -1 399 LSC 0.005013 3 0 1 30 no 0.333333 2 0.500000 0.005013 1.000000 30.300000 IGS_045 igs atpE|atpB atpE-atpB 50544 50548 0 5 LSC 0.000000 0 0 13 25 no 0.000000 1 0.000000 NA 1.000000 19.700000 atpB gene atpB atpB 50549 52030 -1 1482 LSC 0.005398 12 0 18 76 no 1.000000 3 1.000000 0.005398 1.000000 48.500000 IGS_046 igs atpB|rbcL atpB-rbcL 52031 52675 0 645 LSC 0.017571 17 0 83 52 no 1.000000 3 1.000000 0.017571 1.000000 58.900000 rbcL gene rbcL rbcL 52676 54103 1 1428 LSC 0.005602 12 0 69 29 no 1.000000 3 1.000000 0.005602 1.000000 49.500000 IGS_047 igs rbcL|trnR-UCG rbcL-trnR-UCG 54104 54224 0 121 LSC 0.011019 2 0 14 73 no 0.333333 2 0.500000 0.011019 1.000000 33.100000 trnR-UCG tRNA trnR-UCG trnR-UCG 54225 54305 1 81 LSC 0.008230 1 0 2 28 no 0.333333 2 0.500000 0.008230 1.000000 30.400000 IGS_048 igs trnR-UCG|accD trnR-UCG-accD 54306 54650 0 345 LSC 0.015459 8 0 7 300 no 1.000000 3 1.000000 0.015459 1.000000 48.800000 accD gene accD accD 54651 55421 1 771 LSC 0.001729 2 0 105 14 no 1.000000 3 1.000000 0.001729 1.000000 45.900000 IGS_049 igs accD|psaI accD-psaI 55422 55910 0 489 LSC 0.016360 12 0 258 104 no 1.000000 3 1.000000 0.016360 1.000000 59.700000 psaI gene psaI psaI 55911 56021 1 111 LSC 0.006006 1 0 106 51 no 0.333333 2 0.500000 0.006006 1.000000 32.700000 IGS_050 igs psaI|ycf4 psaI-ycf4 56022 56444 0 423 LSC 0.012608 8 0 6 44 no 1.000000 3 1.000000 0.012608 1.000000 48.600000 ycf4 gene ycf4 ycf4 56445 56999 1 555 LSC 0.009610 8 0 39 33 no 1.000000 3 1.000000 0.009610 1.000000 51.400000 IGS_051 igs ycf4|cemA ycf4-cemA 57000 57182 0 183 LSC 0.043716 11 5 69 37 yes 1.000000 3 1.000000 0.037095 1.000000 70.600000 cemA gene cemA cemA 57183 58691 1 1509 LSC 0.009278 21 0 2 72 no 1.000000 3 1.000000 0.009278 1.000000 49.800000 IGS_052 igs cemA|psbJ cemA-psbJ 58692 60730 0 2039 LSC 0.015040 46 10 295 300 yes 1.000000 3 1.000000 0.015097 1.000000 67.800000 psbJ gene psbJ psbJ 60731 60856 -1 126 LSC 0.000000 0 0 16 195 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_053 igs psbJ|psbL psbJ-psbL 60857 60972 0 116 LSC 0.000000 0 0 142 79 no 0.000000 1 0.000000 0.000000 1.000000 24.700000 psbL gene psbL psbL 60973 61104 -1 132 LSC 0.005051 1 0 258 300 no 0.333333 2 0.500000 0.005051 1.000000 43.200000 IGS_054 igs psbL|psbF psbL-psbF 61105 61110 0 6 LSC 0.000000 0 0 52 300 no 0.000000 1 0.000000 NA 1.000000 22.700000 psbF gene psbF psbF 61111 61230 -1 120 LSC 0.000000 0 0 58 300 no 0.000000 1 0.000000 0.000000 1.000000 23.100000 IGS_055 igs psbF|petL psbF-petL 61231 62230 0 1000 LSC 0.006006 9 1 178 34 no 1.000000 3 1.000000 0.006006 0.999000 50.200000 petL gene petL petL 62231 62326 1 96 LSC 0.013889 2 0 149 28 no 1.000000 3 1.000000 0.013889 1.000000 48.500000 IGS_056 igs petL|petG petL-petG 62327 62501 0 175 LSC 0.003810 1 0 1 37 no 0.333333 2 0.500000 0.003810 1.000000 27.500000 petG gene petG petG 62502 62618 1 117 LSC 0.011396 2 0 146 35 no 1.000000 3 1.000000 0.011396 1.000000 47.400000 IGS_057 igs petG|trnW-CCA petG-trnW-CCA 62619 62888 0 270 LSC 0.019753 8 0 27 83 no 1.000000 3 1.000000 0.019753 1.000000 52.100000 trnW-CCA tRNA trnW-CCA trnW-CCA 62889 62962 -1 74 LSC 0.000000 0 0 7 9 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_058 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 62963 63126 0 164 LSC 0.012195 3 3 81 76 no 1.000000 3 1.000000 0.012347 1.000000 53.100000 trnP-UGG tRNA trnP-UGG trnP-UGG 63127 63200 -1 74 LSC 0.000000 0 0 56 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_059 igs trnP-UGG|psaJ trnP-UGG-psaJ 63201 63554 0 354 LSC 0.023540 12 2 130 123 yes 1.000000 3 1.000000 0.021738 1.000000 63.300000 psaJ gene psaJ psaJ 63555 63683 1 129 LSC 0.005168 1 0 21 25 no 0.333333 2 0.500000 0.005168 1.000000 29.900000 IGS_060 igs psaJ|rpl33 psaJ-rpl33 63684 63911 0 228 LSC 0.017544 6 0 5 33 no 1.000000 3 1.000000 0.017544 1.000000 49.100000 rpl33 gene rpl33 rpl33 63912 64112 1 201 LSC 0.009950 3 0 73 37 no 1.000000 3 1.000000 0.009950 1.000000 46.600000 IGS_061 igs rpl33|rps18 rpl33-rps18 64113 64173 0 61 LSC 0.010929 1 0 11 14 no 0.333333 2 0.500000 0.010929 1.000000 32.800000 rps18 gene rps18 rps18 64174 64311 1 138 LSC 0.019324 4 0 23 40 no 1.000000 3 1.000000 0.019324 1.000000 51.500000 IGS_062 igs rps18|rpl20 rps18-rpl20 64312 64637 0 326 LSC 0.014359 7 2 34 89 no 1.000000 3 1.000000 0.014381 0.996933 50.400000 rpl20 gene rpl20 rpl20 64638 65021 -1 384 LSC 0.003472 2 0 7 61 no 0.333333 2 0.500000 0.003472 1.000000 29.500000 IGS_063 igs rpl20|rps12 rpl20-rps12 65022 65972 0 951 LSC 0.009464 13 0 204 15 no 1.000000 3 1.000000 0.009464 1.000000 50.800000 rps12_part1 gene rps12 rps12 65973 66086 -1 114 LSC 0.011696 2 0 196 60 no 1.000000 3 1.000000 0.011696 1.000000 49.500000 IGS_064 igs rps12|clpP rps12-clpP 66087 66384 0 298 LSC 0.014493 6 28 14 4 no 1.000000 3 1.000000 0.014734 0.926174 50.400000 clpP gene clpP clpP 66385 68303 -1 1919 LSC 0.008694 25 3 57 20 no 1.000000 3 1.000000 0.008698 0.998958 50.100000 IGS_065 igs clpP|psbB clpP-psbB 68304 68833 0 530 LSC 0.015094 12 0 123 131 yes 1.000000 3 1.000000 0.015094 1.000000 61.100000 psbB gene psbB psbB 68834 70354 1 1521 LSC 0.007013 16 0 186 54 no 1.000000 3 1.000000 0.007013 1.000000 52.200000 IGS_066 igs psbB|psbT psbB-psbT 70355 70529 0 175 LSC 0.011429 3 1 23 25 no 1.000000 3 1.000000 0.011461 1.000000 47.200000 psbT gene psbT psbT 70530 70634 1 105 LSC 0.006349 1 0 27 153 no 0.333333 2 0.500000 0.006349 1.000000 31.100000 IGS_067 igs psbT|psbN psbT-psbN 70635 70749 0 115 LSC 0.000000 0 0 79 38 no 0.000000 1 0.000000 0.000000 1.000000 21.600000 psbN gene psbN psbN 70750 70881 -1 132 LSC 0.005051 1 0 194 31 no 0.333333 2 0.500000 0.005051 1.000000 30.500000 IGS_068 igs psbN|psbH psbN-psbH 70882 71031 0 150 LSC 0.004444 1 0 93 63 no 0.333333 2 0.500000 0.004444 1.000000 32.600000 psbH gene psbH psbH 71032 71196 1 165 LSC 0.008081 2 0 118 41 no 0.333333 2 0.500000 0.008081 1.000000 33.200000 IGS_069 igs psbH|petB psbH-petB 71197 71322 0 126 LSC 0.010582 2 0 51 19 no 1.000000 3 1.000000 0.010582 1.000000 45.700000 petB gene petB petB 71323 72816 1 1494 LSC 0.012941 29 3 70 1 yes 1.000000 3 1.000000 0.012955 1.000000 52.300000 IGS_070 igs petB|petD petB-petD 72817 72965 0 149 LSC 0.031320 7 0 132 42 no 1.000000 3 1.000000 0.031320 1.000000 60.600000 petD gene petD petD 72966 74083 1 1118 LSC 0.007752 13 0 9 33 no 1.000000 3 1.000000 0.007752 1.000000 49.400000 IGS_071 igs petD|rpl36 petD-rpl36 74084 75911 0 1828 LSC 0.013129 36 1 6 214 no 1.000000 3 1.000000 0.013134 1.000000 51.900000 rpl36 gene rpl36 rpl36 75912 76007 -1 96 LSC 0.000000 0 0 17 118 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_072 igs rpl36|rps8 rpl36-rps8 76008 76559 0 552 LSC 0.006072 5 3 113 24 no 1.000000 3 1.000000 0.006072 0.994565 48.900000 rps8 gene rps8 rps8 76560 76868 -1 309 LSC 0.006472 3 0 91 141 no 0.333333 2 0.500000 0.006472 1.000000 36.100000 IGS_073 igs rps8|rpl14 rps8-rpl14 76869 77133 0 265 LSC 0.010063 4 5 149 6 no 1.000000 3 1.000000 0.010208 1.000000 46.500000 rpl14 gene rpl14 rpl14 77134 77469 -1 336 LSC 0.001984 1 0 75 164 no 0.333333 2 0.500000 0.001984 1.000000 32.600000 IGS_074 igs rpl14|rpl16 rpl14-rpl16 77470 77643 0 174 LSC 0.003831 1 0 300 180 no 0.333333 2 0.500000 0.003831 1.000000 40.900000 rpl16 gene rpl16 rpl16 77644 78816 -1 1173 LSC 0.010230 18 0 9 107 no 1.000000 3 1.000000 0.010230 1.000000 50.900000 IGS_075 igs rpl16|rps3 rpl16-rps3 78817 78922 0 106 LSC 0.000000 0 0 58 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 rps3 gene rps3 rps3 78923 79300 -1 378 LSC 0.019400 11 0 164 48 no 1.000000 3 1.000000 0.019400 1.000000 55.100000 IGS_076 igs rps3|rps19 rps3-rps19 79301 80084 0 784 LSC 0.011905 14 0 7 21 no 1.000000 3 1.000000 0.011905 1.000000 51.900000 rps19 gene rps19 rps19 80085 80318 -1 234 LSC 0.011396 4 0 151 89 no 1.000000 3 1.000000 0.011396 1.000000 51.400000 IGS_077 igs rps19|rpl23 rps19-rpl23 80319 82031 0 1713 LSC 0.013232 34 0 95 65 no 1.000000 3 1.000000 0.013232 1.000000 56.600000 rpl23 gene rpl23 rpl23 82032 82292 -1 261 LSC 0.010217 4 0 9 26 no 0.333333 2 0.500000 0.010217 1.000000 32.200000 IGS_078 igs rpl23|trnI-CAU rpl23-trnI-CAU 82293 82472 0 180 LSC 0.029630 8 3 46 84 yes 1.000000 3 1.000000 0.029944 1.000000 61.700000 trnI-CAU tRNA trnI-CAU trnI-CAU 82473 82546 -1 74 LSC 0.000000 0 0 50 10 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_079 igs trnI-CAU|ndhB trnI-CAU-ndhB 82547 82957 0 411 IRb 0.006488 4 0 124 300 no 1.000000 3 1.000000 0.006488 1.000000 53.200000 ndhB gene ndhB ndhB 82958 83761 1 804 IRb 0.000000 0 0 229 238 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_080 igs ndhB|trnT-UGU ndhB-trnT-UGU 83762 83963 0 202 IRb 0.000000 0 0 300 36 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 trnT-UGU_part1 tRNA trnT-UGU trnT-UGU 83964 83997 1 34 IRb 0.000000 0 0 300 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 trnT-UGU_part2 tRNA trnT-UGU trnT-UGU 84513 84552 1 40 IRb 0.000000 0 0 80 115 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_083 igs trnT-UGU|trnR-ACG trnT-UGU-trnR-ACG 84553 85273 0 721 IRb 0.010171 11 0 120 162 no 1.000000 3 1.000000 0.010171 1.000000 59.200000 trnR-ACG tRNA trnR-ACG trnR-ACG 85274 85348 -1 75 IRb 0.000000 0 0 39 87 no 0.000000 1 0.000000 0.000000 1.000000 21.700000 IGS_084 igs trnR-ACG|rrn5S trnR-ACG-rrn5S 85349 85620 0 272 IRb 0.022059 9 0 114 149 no 1.000000 3 1.000000 0.022059 1.000000 60.100000 rrn5S rRNA rrn5S rrn5S 85621 85743 -1 123 IRb 0.000000 0 0 9 26 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_085 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 85744 86005 0 262 IRb 0.010178 4 0 132 300 no 1.000000 3 1.000000 0.010178 1.000000 53.900000 rrn4.5S rRNA rrn4.5S rrn4.5S 86006 86108 -1 103 IRb 0.000000 0 0 84 300 no 0.000000 1 0.000000 0.000000 1.000000 25.100000 IGS_086 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 86109 86225 0 117 IRb 0.000000 0 0 187 300 no 0.000000 1 0.000000 0.000000 1.000000 32.800000 rrn23S rRNA rrn23S rrn23S 86226 89043 -1 2818 IRb 0.000473 2 0 300 135 no 0.333333 2 0.500000 0.000473 1.000000 38.900000 IGS_087 igs rrn23S|trnA-UGC rrn23S-trnA-UGC 89044 89230 0 187 IRb 0.003565 1 0 249 245 no 0.333333 2 0.500000 0.003565 1.000000 42.300000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 89231 89266 -1 36 IRb 0.000000 0 0 51 209 no 0.000000 1 0.000000 0.000000 1.000000 22.600000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 90074 90110 -1 37 IRb 0.000000 0 0 216 162 no 0.000000 1 0.000000 0.000000 1.000000 30.900000 IGS_090 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 90111 90191 0 81 IRb 0.000000 0 0 253 81 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 90192 90227 -1 36 IRb 0.000000 0 0 300 45 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 91266 91301 -1 36 IRb 0.000000 0 0 156 23 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 IGS_093 igs trnI-GAU|rrn16S trnI-GAU-rrn16S 91302 91622 0 321 IRb 0.008333 4 2 192 300 no 1.000000 3 1.000000 0.008350 0.996885 58.300000 rrn16S rRNA rrn16S rrn16S 91623 93122 -1 1500 IRb 0.000000 0 0 141 68 no 0.000000 1 0.000000 0.000000 1.000000 30.100000 IGS_094 igs rrn16S|psbA rrn16S-psbA 93123 96939 0 3817 IRb 0.003842 22 1 300 300 no 1.000000 3 1.000000 0.003843 1.000000 56.800000 psbA gene psbA psbA 96940 98001 1 1062 IRb 0.000628 1 0 224 36 no 0.333333 2 0.500000 0.000628 1.000000 34.400000 IGS_095 igs psbA|trnH-GUG psbA-trnH-GUG 98002 98428 0 427 IRb 0.009368 6 0 138 173 no 1.000000 3 1.000000 0.009368 1.000000 56.500000 trnH-GUG tRNA trnH-GUG trnH-GUG 98429 98502 1 74 IRb 0.000000 0 0 92 99 no 0.000000 1 0.000000 0.000000 1.000000 25.700000 IGS_096 igs trnH-GUG|trnN-GUU trnH-GUG-trnN-GUU 98503 105620 0 7118 IRb 0.003746 40 1 166 107 no 1.000000 3 1.000000 0.003747 1.000000 47.900000 trnN-GUU tRNA trnN-GUU trnN-GUU 105621 105692 -1 72 IRb 0.000000 0 0 162 35 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_097 igs trnN-GUU|rpl21 trnN-GUU-rpl21 105693 108711 0 3019 SSC 0.014800 67 5 234 84 yes 1.000000 3 1.000000 0.014813 0.999669 56.500000 rpl21 gene rpl21 rpl21 108712 109068 1 357 SSC 0.007470 4 0 4 6 no 1.000000 3 1.000000 0.007470 1.000000 43.700000 IGS_098 igs rpl21|rpl32 rpl21-rpl32 109069 109253 0 185 SSC 0.018215 5 4 32 52 no 1.000000 3 1.000000 0.018356 0.989189 53.700000 rpl32 gene rpl32 rpl32 109254 109433 1 180 SSC 0.018519 5 0 103 58 no 1.000000 3 1.000000 0.018519 1.000000 53.700000 IGS_099 igs rpl32|trnP-GGG rpl32-trnP-GGG 109434 110085 0 652 SSC 0.020450 20 1 1 97 no 1.000000 3 1.000000 0.020469 1.000000 57.000000 trnP-GGG tRNA trnP-GGG trnP-GGG 110086 110159 -1 74 SSC 0.000000 0 0 1 23 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_100 igs trnP-GGG|trnL-UAG trnP-GGG-trnL-UAG 110160 110425 0 266 SSC 0.045113 18 4 75 86 yes 1.000000 3 1.000000 0.045610 1.000000 73.600000 trnL-UAG tRNA trnL-UAG trnL-UAG 110426 110504 1 79 SSC 0.000000 0 0 21 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_101 igs trnL-UAG|ccsA trnL-UAG-ccsA 110505 110837 0 333 SSC 0.020576 10 12 100 11 no 1.000000 3 1.000000 0.020701 0.972973 55.500000 ccsA gene ccsA ccsA 110838 111764 1 927 SSC 0.010068 14 0 28 2 no 1.000000 3 1.000000 0.010068 1.000000 50.300000 IGS_102 igs ccsA|ndhD ccsA-ndhD 111765 112171 0 407 SSC 0.022932 14 1 5 62 no 1.000000 3 1.000000 0.022966 1.000000 55.000000 ndhD gene ndhD ndhD 112172 113680 -1 1509 SSC 0.010161 23 0 40 97 no 1.000000 3 1.000000 0.010161 1.000000 53.200000 IGS_103 igs ndhD|psaC ndhD-psaC 113681 113817 0 137 SSC 0.009732 2 0 51 201 no 1.000000 3 1.000000 0.009732 1.000000 47.500000 psaC gene psaC psaC 113818 114063 -1 246 SSC 0.002710 1 0 15 33 no 0.333333 2 0.500000 0.002710 1.000000 27.900000 IGS_104 igs psaC|ndhE psaC-ndhE 114064 114374 0 311 SSC 0.025723 12 0 44 179 no 1.000000 3 1.000000 0.025723 1.000000 57.400000 ndhE gene ndhE ndhE 114375 114602 -1 228 SSC 0.002924 1 0 91 75 no 0.333333 2 0.500000 0.002924 1.000000 32.500000 IGS_105 igs ndhE|ndhG ndhE-ndhG 114603 114773 0 171 SSC 0.015686 4 1 48 212 no 1.000000 3 1.000000 0.015686 0.994152 51.600000 ndhG gene ndhG ndhG 114774 115376 -1 603 SSC 0.007739 7 12 30 94 no 1.000000 3 1.000000 0.007863 1.000000 53.200000 IGS_106 igs ndhG|ndhI ndhG-ndhI 115377 115495 0 119 SSC 0.005650 1 1 59 111 no 1.000000 3 1.000000 0.005650 0.991597 46.300000 ndhI gene ndhI ndhI 115496 115987 -1 492 SSC 0.013550 10 0 24 48 no 1.000000 3 1.000000 0.013550 1.000000 51.900000 IGS_107 igs ndhI|ndhA ndhI-ndhA 115988 116194 0 207 SSC 0.009662 3 0 23 149 no 1.000000 3 1.000000 0.009662 1.000000 45.400000 ndhA gene ndhA ndhA 116195 118270 -1 2076 SSC 0.012524 39 0 32 50 no 1.000000 3 1.000000 0.012524 1.000000 52.900000 IGS_108 igs ndhA|rps15 ndhA-rps15 118271 119554 0 1284 SSC 0.008048 15 4 14 12 no 1.000000 3 1.000000 0.007543 1.000000 50.100000 rps15 gene rps15 rps15 119555 119824 -1 270 SSC 0.017284 7 0 0 62 no 1.000000 3 1.000000 0.017284 1.000000 48.500000 IGS_109 igs rps15|ycf1 rps15-ycf1 119825 120134 0 310 SSC 0.017316 8 2 26 111 no 1.000000 3 1.000000 0.017316 0.993548 51.300000 ycf1 gene ycf1 ycf1 120135 124148 -1 4014 SSC 0.015446 93 0 10 20 no 1.000000 3 1.000000 0.015446 1.000000 49.600000 IGS_110 igs ycf1|chlN ycf1-chlN 124149 125627 0 1479 SSC 0.018256 39 10 14 69 yes 1.000000 3 1.000000 0.016982 1.000000 57.100000 chlN gene chlN chlN 125628 127013 -1 1386 SSC 0.012987 27 0 13 20 no 1.000000 3 1.000000 0.012987 1.000000 53.000000 IGS_111 igs chlN|chlL chlN-chlL 127014 127255 0 242 SSC 0.013774 5 0 38 48 no 1.000000 3 1.000000 0.013774 1.000000 49.100000 chlL gene chlL chlL 127256 127996 -1 741 SSC 0.016194 18 0 71 33 no 1.000000 3 1.000000 0.016194 1.000000 56.500000 IGS_112 igs chlL|trnN-GUU chlL-trnN-GUU 127997 128439 0 443 IRa 0.012066 8 2 38 234 no 1.000000 3 1.000000 0.012082 0.997743 51.500000 trnN-GUU tRNA trnN-GUU trnN-GUU 128440 128511 1 72 IRa 0.000000 0 0 35 162 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_113 igs trnN-GUU|trnH-GUG trnN-GUU-trnH-GUG 128512 135629 0 7118 IRa 0.003746 40 1 107 166 no 1.000000 3 1.000000 0.003747 1.000000 47.900000 trnH-GUG tRNA trnH-GUG trnH-GUG 135630 135703 -1 74 IRa 0.000000 0 0 99 92 no 0.000000 1 0.000000 0.000000 1.000000 25.700000 IGS_114 igs trnH-GUG|psbA trnH-GUG-psbA 135704 136130 0 427 IRa 0.009368 6 0 173 138 no 1.000000 3 1.000000 0.009368 1.000000 56.500000 psbA gene psbA psbA 136131 137192 -1 1062 IRa 0.000628 1 0 36 224 no 0.333333 2 0.500000 0.000628 1.000000 34.400000 IGS_115 igs psbA|rps12 psbA-rps12 137193 138264 0 1072 IRa 0.003731 6 0 300 300 no 1.000000 3 1.000000 0.003731 1.000000 61.100000 rps12_part2 gene rps12 rps12 138265 139119 -1 855 IRa 0.002339 3 0 161 300 no 1.000000 3 1.000000 0.002339 1.000000 57.300000 IGS_116 igs rps12|rrn16S rps12-rrn16S 139120 141009 0 1890 IRa 0.004586 13 1 271 300 no 1.000000 3 1.000000 0.004587 1.000000 60.900000 rrn16S rRNA rrn16S rrn16S 141010 142509 1 1500 IRa 0.000000 0 0 68 141 no 0.000000 1 0.000000 0.000000 1.000000 30.100000 IGS_117 igs rrn16S|trnI-GAU rrn16S-trnI-GAU 142510 142830 0 321 IRa 0.008333 4 2 300 192 no 1.000000 3 1.000000 0.008350 0.996885 58.300000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 142831 142866 1 36 IRa 0.000000 0 0 23 156 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 143905 143940 1 36 IRa 0.000000 0 0 45 300 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 IGS_120 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 143941 144021 0 81 IRa 0.000000 0 0 81 253 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 144022 144058 1 37 IRa 0.000000 0 0 162 216 no 0.000000 1 0.000000 0.000000 1.000000 30.900000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 144866 144901 1 36 IRa 0.000000 0 0 209 51 no 0.000000 1 0.000000 0.000000 1.000000 22.600000 IGS_123 igs trnA-UGC|rrn23S trnA-UGC-rrn23S 144902 145088 0 187 IRa 0.003565 1 0 245 249 no 0.333333 2 0.500000 0.003565 1.000000 42.300000 rrn23S rRNA rrn23S rrn23S 145089 147906 1 2818 IRa 0.000473 2 0 135 300 no 0.333333 2 0.500000 0.000473 1.000000 38.900000 IGS_124 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 147907 148023 0 117 IRa 0.000000 0 0 300 187 no 0.000000 1 0.000000 0.000000 1.000000 32.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 148024 148126 1 103 IRa 0.000000 0 0 300 84 no 0.000000 1 0.000000 0.000000 1.000000 25.100000 IGS_125 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 148127 148388 0 262 IRa 0.010178 4 0 300 132 no 1.000000 3 1.000000 0.010178 1.000000 53.900000 rrn5S rRNA rrn5S rrn5S 148389 148511 1 123 IRa 0.000000 0 0 26 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_126 igs rrn5S|trnR-ACG rrn5S-trnR-ACG 148512 148783 0 272 IRa 0.019608 8 0 149 114 no 1.000000 3 1.000000 0.019608 1.000000 58.600000 trnR-ACG tRNA trnR-ACG trnR-ACG 148784 148858 1 75 IRa 0.000000 0 0 87 39 no 0.000000 1 0.000000 0.000000 1.000000 21.700000 IGS_127 igs trnR-ACG|trnT-UGU trnR-ACG-trnT-UGU 148859 149579 0 721 IRa 0.010171 11 0 162 120 no 1.000000 3 1.000000 0.010171 1.000000 59.200000 trnT-UGU_part2 tRNA trnT-UGU trnT-UGU 149580 149619 -1 40 IRa 0.000000 0 0 115 80 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 trnT-UGU_part1 tRNA trnT-UGU trnT-UGU 150135 150168 -1 34 IRa 0.000000 0 0 2 300 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_130 igs trnT-UGU|ndhB trnT-UGU-ndhB 150169 150370 0 202 IRa 0.000000 0 0 36 300 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 ndhB gene ndhB ndhB 150371 151174 -1 804 IRa 0.000000 0 0 238 229 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_131 igs ndhB|matK ndhB-matK 151175 1452 0 1791 LSC 0.017514 46 4 300 102 no 1.000000 3 1.000000 0.017154 0.998883 62.100000