Hotspot

trnI-CAU-trnL-CAA

IRb · 83608-85991 · 2384 bp

Back to Taeniatherum

Pi 0.00042

MarkerSeek score 57.40

Primer available yes

Label trnI-CAU-trnL-CAA

Feature Metadata

label_name: trnI-CAU-trnL-CAA
feature_type: igs
region: IRb
length_bp: 2384
variable_sites: 1
pi: 0.00042
unique_haplotype_count: 2
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 57.40

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
trnI-CAU-trnL-CAA_p1	GTTGGGCGCTTTAACCATTC	AAATGGTAGACACGCGAGAC	50.0	50.0	58.0	58.0	2480-2485 bp	1.0	80.1
trnI-CAU-trnL-CAA_p2	GTTGGGCGCTTTAACCATTC	TGAAATGGTAGACACGCGAG	50.0	50.0	58.0	58.0	2482-2487 bp	1.0	80.0
trnI-CAU-trnL-CAA_p3	GTTGGGCGCTTTAACCATTC	TGGTGAAATGGTAGACACGC	50.0	50.0	58.0	58.2	2485-2490 bp	1.0	78.5
trnI-CAU-trnL-CAA_p4	GTTGGGCGCTTTAACCATTC	GAAATGGTAGACACGCGAGA	50.0	50.0	58.0	57.7	2481-2486 bp	1.0	77.9
trnI-CAU-trnL-CAA_p5	GTTGGGCGCTTTAACCATTC	GTTCGAGTCCTCTTCAAGGC	50.0	55.0	58.0	58.3	2432-2437 bp	1.0	77.9