Hotspot

psbZ-trnG-GCC

LSC · 38984-39590 · 607 bp

Back to Stephania

Pi 0.0278

MarkerSeek score 69.10

Primer available yes

Label psbZ-trnG-GCC

Feature Metadata

label_name: psbZ-trnG-GCC
feature_type: igs
region: LSC
length_bp: 607
variable_sites: 52
pi: 0.0278
unique_haplotype_count: 16
primer_available: yes
alignment_reliability: 0.97
markerseek_score: 69.10

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
psbZ-trnG-GCC_p1	CCGGTACATCATTATGGATTGGA	AATCGAACCCGCATCTTCTC	43.5	50.0	58.1	58.1	712-839 bp	1.0	63.9
psbZ-trnG-GCC_p2	CCGGTACATCATTATGGATTGGA	GAATCGAACCCGCATCTTCT	43.5	50.0	58.1	58.1	713-840 bp	1.0	63.9
psbZ-trnG-GCC_p3	TCCGGTACATCATTATGGATTGG	AATCGAACCCGCATCTTCTC	43.5	50.0	58.1	58.1	713-840 bp	1.0	63.9
psbZ-trnG-GCC_p4	TCCGGTACATCATTATGGATTGG	GAATCGAACCCGCATCTTCT	43.5	50.0	58.1	58.1	714-841 bp	1.0	63.9
psbZ-trnG-GCC_p5	CCGGTACATCATTATGGATTGG	AATCGAACCCGCATCTTCTC	45.5	50.0	56.7	58.1	712-839 bp	1.0	62.3