feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH-GUG tRNA trnH-GUG trnH-GUG 98 172 -1 75 LSC 0.000000 0 0 12 114 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_001 igs trnH-GUG|psbA trnH-GUG-psbA 173 628 0 456 LSC 0.010234 9 15 87 300 yes 1.000000 4 1.000000 0.010506 0.971491 57.600000 psbA gene psbA psbA 629 1690 -1 1062 LSC 0.000000 0 0 58 29 no 0.000000 1 0.000000 0.000000 1.000000 27.200000 IGS_002 igs psbA|trnK psbA-trnK 1691 1955 0 265 LSC 0.001901 1 5 300 149 no 1.000000 4 1.000000 0.001918 0.988679 51.900000 trnK_part2 tRNA trnK trnK 1956 1990 -1 35 LSC 0.000000 0 0 235 114 no 0.000000 1 0.000000 0.000000 1.000000 27.300000 trnK_part1 tRNA trnK trnK 4495 4531 -1 37 LSC 0.000000 0 0 37 33 no 0.000000 1 0.000000 0.000000 1.000000 21.200000 IGS_005 igs trnK|rps16 trnK-rps16 4532 5454 0 923 LSC 0.006248 11 20 74 52 no 1.000000 4 1.000000 0.006266 0.980498 54.000000 rps16 gene rps16 rps16 5455 6619 -1 1165 LSC 0.004156 9 12 24 51 no 1.000000 4 1.000000 0.004178 0.996567 49.500000 IGS_006 igs rps16|trnQ rps16-trnQ 6620 8116 0 1497 LSC 0.011394 32 9 147 300 yes 1.000000 4 1.000000 0.011411 0.996660 63.200000 trnQ tRNA trnQ trnQ 8117 8188 -1 72 LSC 0.000000 0 0 64 300 no 0.000000 1 0.000000 0.000000 1.000000 23.500000 IGS_007 igs trnQ|psbK trnQ-psbK 8189 8534 0 346 LSC 0.000000 0 0 136 212 no 0.000000 1 0.000000 0.000000 1.000000 29.900000 psbK gene psbK psbK 8535 8720 1 186 LSC 0.000000 0 0 300 26 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_008 igs psbK|psbI psbK-psbI 8721 9047 0 327 LSC 0.004587 3 4 300 126 no 1.000000 4 1.000000 0.004625 0.993884 52.000000 psbI gene psbI psbI 9048 9158 1 111 LSC 0.000000 0 0 157 15 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_009 igs psbI|trnS-GCU psbI-trnS-GCU 9159 9544 0 386 LSC 0.025000 9 193 268 94 yes 1.000000 4 1.000000 0.024029 0.510363 54.400000 trnS-GCU tRNA trnS-GCU trnS-GCU 9545 9632 -1 88 LSC 0.000000 0 0 27 6 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_010 igs trnS-GCU|trnG trnS-GCU-trnG 9633 10437 0 805 LSC 0.003106 5 0 115 300 no 1.000000 4 1.000000 0.003106 1.000000 54.500000 trnG_part1 tRNA trnG trnG 10438 10460 1 23 LSC 0.000000 0 0 54 300 no 0.000000 1 0.000000 0.000000 1.000000 22.800000 trnG_part2 tRNA trnG trnG 11183 11231 1 49 LSC 0.000000 0 0 75 158 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 IGS_013 igs trnG|trnR-UCU trnG-trnR-UCU 11232 11473 0 242 LSC 0.004149 2 6 124 104 no 1.000000 4 1.000000 0.004202 0.987603 50.800000 trnR-UCU tRNA trnR-UCU trnR-UCU 11474 11545 1 72 LSC 0.000000 0 0 53 32 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_014 igs trnR-UCU|atpA trnR-UCU-atpA 11546 11821 0 276 LSC 0.007850 4 7 125 198 no 1.000000 4 1.000000 0.007959 0.996377 55.100000 atpA gene atpA atpA 11822 13345 -1 1524 LSC 0.001750 5 0 21 53 no 1.000000 4 1.000000 0.001750 1.000000 46.500000 IGS_015 igs atpA|atpF atpA-atpF 13346 13409 0 64 LSC 0.007937 1 2 150 34 no 1.000000 4 1.000000 0.008065 0.968750 48.500000 atpF gene atpF atpF 13410 14737 -1 1328 LSC 0.002259 6 1 10 300 no 1.000000 4 1.000000 0.002260 1.000000 46.200000 IGS_016 igs atpF|atpH atpF-atpH 14738 15074 0 337 LSC 0.000000 0 0 300 258 no 0.000000 1 0.000000 0.000000 1.000000 34.500000 atpH gene atpH atpH 15075 15320 -1 246 LSC 0.000000 0 0 300 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_017 igs atpH|atpI atpH-atpI 15321 16347 0 1027 LSC 0.002921 6 9 300 300 yes 1.000000 4 1.000000 0.002935 1.000000 61.800000 atpI gene atpI atpI 16348 17091 -1 744 LSC 0.000000 0 0 2 177 no 0.000000 1 0.000000 0.000000 1.000000 25.100000 IGS_018 igs atpI|rps2 atpI-rps2 17092 17307 0 216 LSC 0.002315 1 0 300 261 no 0.250000 2 0.500000 0.002315 1.000000 40.100000 rps2 gene rps2 rps2 17308 18018 -1 711 LSC 0.002110 3 0 38 144 no 0.250000 2 0.500000 0.002110 1.000000 34.000000 IGS_019 igs rps2|rpoC2 rps2-rpoC2 18019 18259 0 241 LSC 0.002075 1 3 53 86 no 0.500000 3 0.666667 0.002101 0.987552 34.800000 rpoC2 gene rpoC2 rpoC2 18260 22432 -1 4173 LSC 0.003075 23 0 96 103 no 1.000000 4 1.000000 0.003075 1.000000 48.100000 IGS_020 igs rpoC2|rpoC1 rpoC2-rpoC1 22433 22627 0 195 LSC 0.003419 1 0 300 254 no 0.000000 2 0.000000 0.003419 1.000000 35.900000 rpoC1 gene rpoC1 rpoC1 22628 25437 -1 2810 LSC 0.000712 4 0 91 1 no 0.500000 3 0.666667 0.000712 1.000000 32.200000 IGS_021 igs rpoC1|rpoB rpoC1-rpoB 25438 25463 0 26 LSC 0.019231 1 0 300 77 no 0.250000 2 0.500000 0.019231 1.000000 42.700000 rpoB gene rpoB rpoB 25464 28676 -1 3213 LSC 0.001764 11 0 24 300 no 1.000000 4 1.000000 0.001764 1.000000 43.300000 IGS_022 igs rpoB|trnC rpoB-trnC 28677 29937 0 1261 LSC 0.003436 8 7 262 300 yes 1.000000 4 1.000000 0.003448 0.998414 61.700000 trnC tRNA trnC trnC 29938 30008 1 71 LSC 0.000000 0 0 15 256 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_023 igs trnC|petN trnC-petN 30009 30962 0 954 LSC 0.006115 11 2 86 103 no 1.000000 4 1.000000 0.006121 1.000000 54.600000 petN gene petN petN 30963 31052 1 90 LSC 0.000000 0 0 20 13 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_024 igs petN|psbM petN-psbM 31053 31790 0 738 LSC 0.005646 8 0 110 300 no 1.000000 4 1.000000 0.005646 1.000000 55.900000 psbM gene psbM psbM 31791 31895 -1 105 LSC 0.000000 0 0 42 290 no 0.000000 1 0.000000 0.000000 1.000000 21.900000 IGS_025 igs psbM|trnD psbM-trnD 31896 33054 0 1159 LSC 0.003752 8 131 147 183 yes 1.000000 4 1.000000 0.003291 0.992235 62.500000 trnD tRNA trnD trnD 33055 33128 -1 74 LSC 0.000000 0 0 7 109 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_026 igs trnD|trnY trnD-trnY 33129 33548 0 420 LSC 0.007246 6 6 81 94 no 1.000000 4 1.000000 0.007246 0.985714 52.400000 trnY tRNA trnY trnY 33549 33632 -1 84 LSC 0.000000 0 0 84 10 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_027 igs trnY|trnE trnY-trnE 33633 33691 0 59 LSC 0.008475 1 0 168 216 no 0.250000 2 0.500000 0.008475 1.000000 42.000000 trnE tRNA trnE trnE 33692 33764 -1 73 LSC 0.000000 0 0 48 143 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_028 igs trnE|trnT trnE-trnT 33765 34649 0 885 LSC 0.008712 13 325 121 300 yes 1.000000 4 1.000000 0.007737 0.994350 61.800000 trnT tRNA trnT trnT 34650 34721 1 72 LSC 0.000000 0 0 55 284 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 IGS_029 igs trnT|psbD trnT-psbD 34722 36118 0 1397 LSC 0.005974 16 8 127 245 yes 1.000000 4 1.000000 0.005983 0.998568 58.000000 psbD gene psbD psbD 36119 37180 1 1062 LSC 0.002040 4 0 159 60 no 1.000000 4 1.000000 0.002040 1.000000 49.600000 psbC gene psbC psbC 37128 38549 1 1422 LSC 0.000469 1 0 300 229 no 0.000000 2 0.000000 0.000469 1.000000 40.300000 IGS_031 igs psbC|trnS psbC-trnS 38550 38794 0 245 LSC 0.002041 1 0 300 196 no 0.250000 2 0.500000 0.002041 1.000000 39.600000 trnS tRNA trnS trnS 38795 38887 1 93 LSC 0.000000 0 0 15 103 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_032 igs trnS|psbZ trnS-psbZ 38888 39232 0 345 LSC 0.006391 3 7 108 223 no 1.000000 4 1.000000 0.003940 0.979710 52.300000 psbZ gene psbZ psbZ 39233 39421 1 189 LSC 0.000000 0 0 132 34 no 0.000000 1 0.000000 0.000000 1.000000 21.300000 IGS_033 igs psbZ|trnG psbZ-trnG 39422 39794 0 373 LSC 0.009830 7 4 300 173 no 1.000000 4 1.000000 0.008981 1.000000 60.000000 IGS_034 igs trnG|trnfM trnG-trnfM 39866 40038 0 173 LSC 0.002890 1 3 150 300 no 1.000000 4 1.000000 0.002918 0.988439 52.600000 trnfM tRNA trnfM trnfM 40039 40112 -1 74 LSC 0.000000 0 0 70 300 no 0.000000 1 0.000000 0.000000 1.000000 24.000000 IGS_035 igs trnfM|rps14 trnfM-rps14 40113 40274 0 162 LSC 0.000000 0 0 144 300 no 0.000000 1 0.000000 0.000000 1.000000 29.500000 rps14 gene rps14 rps14 40275 40577 -1 303 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_036 igs rps14|psaB rps14-psaB 40578 40698 0 121 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaB gene psaB psaB 40699 42903 -1 2205 LSC 0.000907 4 0 300 259 no 0.500000 3 0.666667 0.000907 1.000000 48.500000 IGS_037 igs psaB|psaA psaB-psaA 42904 42928 0 25 LSC 0.000000 0 0 300 234 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 42929 45181 -1 2253 LSC 0.000444 2 0 300 120 no 0.500000 3 0.666667 0.000444 1.000000 42.100000 IGS_038 igs psaA|ycf3 psaA-ycf3 45182 45948 0 767 LSC 0.009138 13 8 300 256 yes 1.000000 4 1.000000 0.008101 0.992177 66.000000 ycf3 gene ycf3 ycf3 45949 47936 -1 1988 LSC 0.003102 10 12 75 138 yes 1.000000 4 1.000000 0.002106 0.995473 51.000000 IGS_039 igs ycf3|trnS ycf3-trnS 47937 48836 0 900 LSC 0.003889 7 3 300 99 no 1.000000 4 1.000000 0.003897 1.000000 54.300000 trnS tRNA trnS trnS 48837 48923 1 87 LSC 0.000000 0 0 45 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_040 igs trnS|rps4 trnS-rps4 48924 49202 0 279 LSC 0.001792 1 0 132 300 no 0.250000 2 0.500000 0.001792 1.000000 34.600000 rps4 gene rps4 rps4 49203 49808 -1 606 LSC 0.000825 1 0 266 264 no 0.250000 2 0.500000 0.000825 1.000000 45.300000 IGS_041 igs rps4|trnT-UGU rps4-trnT-UGU 49809 50210 0 402 LSC 0.016169 9 6 279 91 no 1.000000 4 1.000000 0.009214 0.987562 58.000000 trnT-UGU tRNA trnT-UGU trnT-UGU 50211 50283 -1 73 LSC 0.000000 0 0 83 18 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_042 igs trnT-UGU|trnL trnT-UGU-trnL 50284 51342 0 1059 LSC 0.006138 13 11 156 103 yes 1.000000 4 1.000000 0.006179 1.000000 57.000000 trnL_part1 tRNA trnL trnL 51343 51377 1 35 LSC 0.000000 0 0 0 68 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 trnL_part2 tRNA trnL trnL 51899 51948 1 50 LSC 0.000000 0 0 300 6 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_045 igs trnL|trnF-GAA trnL-trnF-GAA 51949 52313 0 365 LSC 0.007326 5 8 300 79 no 1.000000 4 1.000000 0.007416 0.997260 52.300000 trnF-GAA tRNA trnF-GAA trnF-GAA 52314 52386 1 73 LSC 0.000000 0 0 52 6 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_046 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 52387 53078 0 692 LSC 0.005065 7 7 125 4 no 1.000000 4 1.000000 0.005088 0.998555 48.700000 ndhJ gene ndhJ ndhJ 53079 53555 -1 477 LSC 0.003843 3 0 87 130 no 0.500000 3 0.666667 0.003843 1.000000 40.900000 IGS_047 igs ndhJ|ndhK ndhJ-ndhK 53556 53683 0 128 LSC 0.000000 0 0 284 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 ndhK gene ndhK ndhK 53684 54364 -1 681 LSC 0.000734 1 0 300 65 no 0.250000 2 0.500000 0.000734 1.000000 35.100000 IGS_048 igs ndhK|ndhC ndhK-ndhC 54365 54432 0 68 LSC 0.009804 1 1 300 300 no 0.500000 3 0.666667 0.009877 1.000000 51.100000 ndhC gene ndhC ndhC 54433 54795 -1 363 LSC 0.001377 1 0 2 300 no 0.250000 2 0.500000 0.001377 1.000000 25.900000 IGS_049 igs ndhC|trnV ndhC-trnV 54796 55531 0 736 LSC 0.001361 2 2 47 53 no 1.000000 4 1.000000 0.001362 0.997283 48.500000 trnV_part2 tRNA trnV trnV 55532 55566 -1 35 LSC 0.000000 0 0 1 18 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 trnV_part1 tRNA trnV trnV 56174 56212 -1 39 LSC 0.000000 0 0 255 60 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 IGS_052 igs trnV|trnM trnV-trnM 56213 56407 0 195 LSC 0.008547 3 0 294 170 no 0.500000 3 0.666667 0.008547 1.000000 46.600000 trnM tRNA trnM trnM 56408 56480 1 73 LSC 0.000000 0 0 96 97 no 0.000000 1 0.000000 0.000000 1.000000 25.900000 IGS_053 igs trnM|atpE trnM-atpE 56481 56687 0 207 LSC 0.008052 3 0 169 300 no 1.000000 4 1.000000 0.008052 1.000000 55.600000 atpE gene atpE atpE 56688 57089 -1 402 LSC 0.000000 0 0 58 300 no 0.000000 1 0.000000 0.000000 1.000000 25.200000 atpB gene atpB atpB 57086 58582 -1 1497 LSC 0.001002 3 0 300 50 no 1.000000 4 1.000000 0.001002 1.000000 48.200000 IGS_055 igs atpB|rbcL atpB-rbcL 58583 59339 0 757 LSC 0.003338 5 8 164 255 no 0.500000 3 0.666667 0.003338 0.989432 49.900000 rbcL gene rbcL rbcL 59340 60767 1 1428 LSC 0.003151 9 0 233 91 no 1.000000 4 1.000000 0.003151 1.000000 52.800000 IGS_056 igs rbcL|accD rbcL-accD 60768 61540 0 773 LSC 0.006693 10 5 300 223 yes 1.000000 4 1.000000 0.006276 0.997413 64.100000 accD gene accD accD 61541 63031 1 1491 LSC 0.002012 6 6 117 11 no 1.000000 4 1.000000 0.002017 1.000000 46.500000 IGS_057 igs accD|psaI accD-psaI 63032 63723 0 692 LSC 0.005306 7 3 300 300 yes 1.000000 4 1.000000 0.005313 0.998555 62.900000 psaI gene psaI psaI 63724 63837 1 114 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_058 igs psaI|ycf4 psaI-ycf4 63838 64307 0 470 LSC 0.000000 0 2 300 65 no 0.000000 2 0.000000 0.000000 0.995745 27.600000 ycf4 gene ycf4 ycf4 64308 64862 1 555 LSC 0.002102 2 0 300 237 no 0.500000 3 0.666667 0.002102 1.000000 49.800000 IGS_059 igs ycf4|cemA ycf4-cemA 64863 65485 0 623 LSC 0.004823 6 12 42 60 no 1.000000 4 1.000000 0.004871 0.998395 52.500000 cemA gene cemA cemA 65486 66181 1 696 LSC 0.000958 1 0 170 106 no 0.000000 2 0.000000 0.000958 1.000000 33.600000 IGS_060 igs cemA|petA cemA-petA 66182 66389 0 208 LSC 0.004808 2 0 300 300 no 0.250000 2 0.500000 0.004808 1.000000 41.800000 petA gene petA petA 66390 67352 1 963 LSC 0.000519 1 0 91 4 no 0.250000 2 0.500000 0.000519 1.000000 30.400000 IGS_061 igs petA|psbJ petA-psbJ 67353 68435 0 1083 LSC 0.008642 17 14 300 50 no 1.000000 4 1.000000 0.007918 0.995383 54.800000 psbJ gene psbJ psbJ 68436 68558 -1 123 LSC 0.004065 1 0 172 300 no 0.250000 2 0.500000 0.004065 1.000000 39.200000 IGS_062 igs psbJ|psbL psbJ-psbL 68559 68707 0 149 LSC 0.000000 0 1 72 300 no 0.250000 2 0.500000 0.000000 1.000000 29.600000 psbL gene psbL psbL 68708 68824 -1 117 LSC 0.000000 0 0 221 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_063 igs psbL|psbF psbL-psbF 68825 68846 0 22 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbF gene psbF psbF 68847 68966 -1 120 LSC 0.000000 0 0 300 263 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_064 igs psbF|psbE psbF-psbE 68967 68975 0 9 LSC 0.000000 0 0 300 254 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbE gene psbE psbE 68976 69227 -1 252 LSC 0.000000 0 0 300 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_065 igs psbE|petL psbE-petL 69228 70607 0 1380 LSC 0.004139 10 18 300 300 yes 1.000000 4 1.000000 0.004156 0.987681 62.700000 petL gene petL petL 70608 70703 1 96 LSC 0.000000 0 0 42 277 no 0.000000 1 0.000000 0.000000 1.000000 21.900000 IGS_066 igs petL|petG petL-petG 70704 70891 0 188 LSC 0.000000 0 0 138 89 no 0.000000 1 0.000000 0.000000 1.000000 25.400000 petG gene petG petG 70892 71005 1 114 LSC 0.004386 1 0 300 59 no 0.250000 2 0.500000 0.004386 1.000000 30.900000 IGS_067 igs petG|trnW petG-trnW 71006 71124 0 119 LSC 0.004237 1 1 24 156 no 0.250000 2 0.500000 0.004237 0.991597 28.900000 trnW tRNA trnW trnW 71125 71198 -1 74 LSC 0.000000 0 0 59 82 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 IGS_068 igs trnW|trnP trnW-trnP 71199 71381 0 183 LSC 0.008427 3 5 133 163 no 1.000000 4 1.000000 0.008427 0.972678 55.700000 trnP tRNA trnP trnP 71382 71455 -1 74 LSC 0.000000 0 0 2 89 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_069 igs trnP|psaJ trnP-psaJ 71456 71844 0 389 LSC 0.003856 3 0 76 128 no 0.500000 3 0.666667 0.003856 1.000000 38.400000 psaJ gene psaJ psaJ 71845 71979 1 135 LSC 0.003704 1 0 2 70 no 0.250000 2 0.500000 0.003704 1.000000 26.200000 IGS_070 igs psaJ|rpl33 psaJ-rpl33 71980 72444 0 465 LSC 0.003584 3 1 6 214 no 1.000000 4 1.000000 0.002869 1.000000 44.100000 rpl33 gene rpl33 rpl33 72445 72645 1 201 LSC 0.000000 0 0 300 13 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_071 igs rpl33|rps18 rpl33-rps18 72646 72929 0 284 LSC 0.008803 4 13 300 300 yes 1.000000 4 1.000000 0.006038 0.971831 63.000000 rps18 gene rps18 rps18 72930 73235 1 306 LSC 0.000000 0 0 66 85 no 0.000000 1 0.000000 0.000000 1.000000 23.800000 IGS_072 igs rps18|rpl20 rps18-rpl20 73236 73495 0 260 LSC 0.001931 1 1 300 141 no 0.500000 3 0.666667 0.001931 0.996154 40.400000 rpl20 gene rpl20 rpl20 73496 73849 -1 354 LSC 0.004708 3 0 174 30 no 1.000000 4 1.000000 0.004708 1.000000 44.100000 IGS_073 igs rpl20|rps12 rpl20-rps12 73850 74595 0 746 LSC 0.005585 7 2 51 105 no 1.000000 4 1.000000 0.005593 1.000000 51.600000 rps12_part1 gene rps12 rps12 74596 74709 -1 114 LSC 0.004386 1 0 39 82 no 0.250000 2 0.500000 0.004386 1.000000 29.400000 IGS_074 igs rps12|clpP rps12-clpP 74710 74855 0 146 LSC 0.006849 2 0 8 300 no 0.500000 3 0.666667 0.006849 1.000000 33.500000 clpP gene clpP clpP 74856 76960 -1 2105 LSC 0.006572 24 14 55 114 yes 1.000000 4 1.000000 0.005722 0.999050 51.800000 IGS_075 igs clpP|psbB clpP-psbB 76961 77413 0 453 LSC 0.002208 2 0 300 300 no 0.250000 2 0.500000 0.002208 1.000000 43.200000 psbB gene psbB psbB 77414 78940 1 1527 LSC 0.000327 1 0 277 168 no 0.250000 2 0.500000 0.000327 1.000000 42.500000 IGS_076 igs psbB|psbT psbB-psbT 78941 79114 0 174 LSC 0.003831 1 0 300 99 no 0.000000 2 0.000000 0.003831 1.000000 28.600000 psbT gene psbT psbT 79115 79222 1 108 LSC 0.004630 1 0 5 49 no 0.250000 2 0.500000 0.004630 1.000000 27.100000 IGS_077 igs psbT|psbN psbT-psbN 79223 79282 0 60 LSC 0.008333 1 0 8 15 no 0.250000 2 0.500000 0.008333 1.000000 29.900000 psbN gene psbN psbN 79283 79414 -1 132 LSC 0.005051 1 0 10 300 no 0.000000 2 0.000000 0.005051 1.000000 22.700000 IGS_078 igs psbN|psbH psbN-psbH 79415 79518 0 104 LSC 0.000000 0 0 116 300 no 0.000000 1 0.000000 0.000000 1.000000 27.400000 psbH gene psbH psbH 79519 79740 1 222 LSC 0.000000 0 0 220 97 no 0.000000 1 0.000000 0.000000 1.000000 26.000000 IGS_079 igs psbH|petB psbH-petB 79741 79860 0 120 LSC 0.004167 1 0 300 113 no 0.250000 2 0.500000 0.004167 1.000000 34.800000 petB gene petB petB 79861 81296 1 1436 LSC 0.001857 5 0 22 17 no 1.000000 4 1.000000 0.001857 1.000000 46.300000 IGS_080 igs petB|petD petB-petD 81297 81494 0 198 LSC 0.002525 1 0 300 132 no 0.250000 2 0.500000 0.002525 1.000000 35.100000 petD gene petD petD 81495 82727 1 1233 LSC 0.001757 4 0 180 113 no 1.000000 4 1.000000 0.001757 1.000000 53.400000 IGS_081 igs petD|rpoA petD-rpoA 82728 82943 0 216 LSC 0.010031 4 2 300 300 no 1.000000 4 1.000000 0.010092 0.995370 60.300000 rpoA gene rpoA rpoA 82944 83972 -1 1029 LSC 0.000972 2 0 47 300 no 0.250000 2 0.500000 0.000972 1.000000 33.900000 IGS_082 igs rpoA|rps11 rpoA-rps11 83973 84039 0 67 LSC 0.000000 0 0 253 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps11 gene rps11 rps11 84040 84456 -1 417 LSC 0.000000 0 0 300 77 no 0.000000 1 0.000000 0.000000 1.000000 27.000000 IGS_083 igs rps11|rpl36 rps11-rpl36 84457 84581 0 125 LSC 0.012000 3 0 300 194 no 0.500000 3 0.666667 0.012000 1.000000 51.100000 rpl36 gene rpl36 rpl36 84582 84695 -1 114 LSC 0.000000 0 0 12 80 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_084 igs rpl36|rps8 rpl36-rps8 84696 85212 0 517 LSC 0.007092 6 261 126 184 no 1.000000 4 1.000000 0.005838 0.984526 58.100000 rps8 gene rps8 rps8 85213 85617 -1 405 LSC 0.001235 1 0 55 176 no 0.250000 2 0.500000 0.001235 1.000000 30.600000 IGS_085 igs rps8|rpl14 rps8-rpl14 85618 85796 0 179 LSC 0.002793 1 1 220 221 no 0.500000 3 0.666667 0.002799 1.000000 45.700000 rpl14 gene rpl14 rpl14 85797 86165 -1 369 LSC 0.001355 1 0 2 101 no 0.250000 2 0.500000 0.001355 1.000000 26.000000 IGS_086 igs rpl14|rpl16 rpl14-rpl16 86166 86307 0 142 LSC 0.007092 2 5 147 66 no 1.000000 4 1.000000 0.007282 0.971831 50.900000 rpl16 gene rpl16 rpl16 86308 87791 -1 1484 LSC 0.004043 11 2 34 79 no 1.000000 4 1.000000 0.004046 0.999326 49.200000 IGS_087 igs rpl16|rps3 rpl16-rps3 87792 87966 0 175 LSC 0.008571 3 0 228 102 no 0.500000 3 0.666667 0.008571 1.000000 41.800000 rps3 gene rps3 rps3 87967 88626 -1 660 LSC 0.003788 5 0 27 300 no 0.500000 3 0.666667 0.003788 1.000000 39.100000 rpl22 gene rpl22 rpl22 88611 89057 -1 447 LSC 0.000000 0 6 5 262 no 0.000000 2 0.000000 0.000000 0.986577 23.500000 IGS_089 igs rpl22|rps19 rpl22-rps19 89058 89115 0 58 LSC 0.000000 0 0 300 204 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps19 gene rps19 rps19 89116 89394 -1 279 LSC 0.001792 1 0 300 54 no 0.250000 2 0.500000 0.001792 1.000000 28.700000 IGS_090 igs rps19|rpl2 rps19-rpl2 89395 89487 0 93 IRb 0.007168 1 5 74 300 no 0.500000 3 0.666667 0.003584 1.000000 44.100000 rpl2 gene rpl2 rpl2 89488 90978 -1 1491 IRb 0.000335 1 0 38 300 no 0.250000 2 0.500000 0.000335 1.000000 32.800000 IGS_091 igs rpl2|rpl23 rpl2-rpl23 90979 90996 0 18 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 90997 91278 -1 282 IRb 0.000000 0 0 300 103 no 0.000000 1 0.000000 0.000000 1.000000 26.500000 IGS_092 igs rpl23|trnI rpl23-trnI 91279 91443 0 165 IRb 0.003030 1 0 300 300 no 0.250000 2 0.500000 0.003030 1.000000 40.600000 IGS_093 igs trnI|ycf2 trnI-ycf2 91518 91605 0 88 IRb 0.000000 0 0 135 300 no 0.000000 1 0.000000 0.000000 1.000000 28.900000 ycf2 gene ycf2 ycf2 91606 98469 1 6864 IRb 0.000437 6 6 223 125 no 1.000000 4 1.000000 0.000437 1.000000 47.300000 IGS_094 igs ycf2|ycf15 ycf2-ycf15 98470 98616 0 147 IRb 0.003401 1 0 300 165 no 0.250000 2 0.500000 0.003401 1.000000 38.200000 ycf15 gene ycf15 ycf15 98617 98850 1 234 IRb 0.002137 1 0 21 300 no 0.250000 2 0.500000 0.002137 1.000000 26.500000 IGS_095 igs ycf15|trnL ycf15-trnL 98851 99412 0 562 IRb 0.000000 0 0 68 300 no 0.000000 1 0.000000 0.000000 1.000000 29.300000 IGS_096 igs trnL|ndhB trnL-ndhB 99494 100093 0 600 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 ndhB gene ndhB ndhB 100094 102307 -1 2214 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 38.500000 IGS_097 igs ndhB|rps7 ndhB-rps7 102308 102619 0 312 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.000000 rps7 gene rps7 rps7 102620 103087 -1 468 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_098 igs rps7|rps12 rps7-rps12 103088 103140 0 53 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 103141 103934 -1 794 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_099 igs rps12|trnV rps12-trnV 103935 105636 0 1702 IRb 0.000882 3 7 300 300 no 1.000000 4 1.000000 0.000884 0.999412 59.400000 IGS_100 igs trnV|rrn16S trnV-rrn16S 105709 105935 0 227 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 105936 107426 1 1491 IRb 0.000000 0 0 300 281 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_101 igs rrn16S|trnI rrn16S-trnI 107427 107725 0 299 IRb 0.001672 1 0 300 300 no 0.250000 2 0.500000 0.001672 1.000000 39.600000 trnI_part1 tRNA trnI trnI 107726 107762 1 37 IRb 0.000000 0 0 17 300 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 trnI_part2 tRNA trnI trnI 108717 108751 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_104 igs trnI|trnA trnI-trnA 108752 108815 0 64 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 108816 108853 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 109666 109700 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_107 igs trnA|rrn23S trnA-rrn23S 109701 109867 0 167 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 109868 112677 1 2810 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_108 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 112678 112781 0 104 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 112782 112884 1 103 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_109 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 112885 113140 0 256 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn5S rRNA rrn5S rrn5S 113141 113261 1 121 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_110 igs rrn5S|trnR rrn5S-trnR 113262 113514 0 253 IRb 0.000000 0 1 300 300 no 0.250000 2 0.500000 0.000000 0.996047 38.800000 trnR tRNA trnR trnR 113515 113588 1 74 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_111 igs trnR|trnN trnR-trnN 113589 114180 0 592 IRb 0.000000 0 0 300 271 no 0.000000 1 0.000000 0.000000 1.000000 39.800000 trnN tRNA trnN trnN 114181 114252 -1 72 IRb 0.000000 0 0 300 199 no 0.000000 1 0.000000 0.000000 1.000000 33.700000 IGS_112 igs trnN|ndhF trnN-ndhF 114253 115587 0 1335 IRb 0.004370 9 54 300 122 no 1.000000 4 1.000000 0.002786 0.998502 60.400000 ndhF gene ndhF ndhF 115588 117816 -1 2229 SSC 0.001495 6 0 15 9 yes 1.000000 4 1.000000 0.001495 1.000000 43.900000 IGS_113 igs ndhF|rpl32 ndhF-rpl32 117817 118685 0 869 SSC 0.011507 18 3 141 76 yes 1.000000 4 1.000000 0.011535 0.997699 57.600000 rpl32 gene rpl32 rpl32 118686 118850 1 165 SSC 0.003030 1 0 93 18 no 0.250000 2 0.500000 0.003030 1.000000 26.900000 IGS_114 igs rpl32|trnL rpl32-trnL 118851 119878 0 1028 SSC 0.009250 17 243 88 167 yes 1.000000 4 1.000000 0.009590 0.999027 61.000000 IGS_115 igs trnL|ccsA trnL-ccsA 119959 120075 0 117 SSC 0.019345 4 10 107 300 yes 1.000000 4 1.000000 0.016856 0.957265 62.900000 ccsA gene ccsA ccsA 120076 121035 1 960 SSC 0.001215 2 0 7 150 no 0.500000 3 0.666667 0.001215 1.000000 35.700000 IGS_116 igs ccsA|ndhD ccsA-ndhD 121036 122703 0 1668 SSC 0.001801 6 4 225 124 no 1.000000 4 1.000000 0.001802 0.998801 54.200000 ndhD gene ndhD ndhD 122704 122877 -1 174 SSC 0.005747 2 0 115 275 no 0.250000 2 0.500000 0.005747 1.000000 36.100000 IGS_117 igs ndhD|psaC ndhD-psaC 122878 122903 0 26 SSC 0.000000 0 0 38 249 no 0.000000 1 0.000000 0.000000 1.000000 21.600000 psaC gene psaC psaC 122904 123149 -1 246 SSC 0.000000 0 0 64 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_118 igs psaC|ndhE psaC-ndhE 123150 123390 0 241 SSC 0.006224 3 0 300 72 no 0.500000 3 0.666667 0.006224 1.000000 37.900000 ndhE gene ndhE ndhE 123391 123696 -1 306 SSC 0.001634 1 0 9 300 no 0.250000 2 0.500000 0.001634 1.000000 25.400000 IGS_119 igs ndhE|ndhG ndhE-ndhG 123697 123921 0 225 SSC 0.000000 0 2 233 300 no 0.500000 3 0.666667 0.000000 0.991111 44.000000 ndhG gene ndhG ndhG 123922 124458 -1 537 SSC 0.000931 1 0 300 300 no 0.250000 2 0.500000 0.000931 1.000000 44.000000 IGS_120 igs ndhG|ndhI ndhG-ndhI 124459 124817 0 359 SSC 0.001393 1 4 10 93 no 1.000000 4 1.000000 0.001402 0.991643 41.600000 ndhI gene ndhI ndhI 124818 125357 -1 540 SSC 0.003086 3 0 55 73 no 0.500000 3 0.666667 0.003086 1.000000 39.300000 IGS_121 igs ndhI|ndhA ndhI-ndhA 125358 125442 0 85 SSC 0.011765 2 0 110 300 no 0.500000 3 0.666667 0.011765 1.000000 44.600000 ndhA gene ndhA ndhA 125443 127726 -1 2284 SSC 0.000949 4 1 1 300 no 1.000000 4 1.000000 0.000949 0.999562 42.900000 IGS_122 igs ndhA|ndhH ndhA-ndhH 127727 127727 0 1 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 ndhH gene ndhH ndhH 127728 128909 -1 1182 SSC 0.000564 1 0 300 92 no 0.000000 2 0.000000 0.000564 1.000000 32.300000 IGS_123 igs ndhH|rps15 ndhH-rps15 128910 129017 0 108 SSC 0.004630 1 0 300 287 no 0.250000 2 0.500000 0.004630 1.000000 41.700000 rps15 gene rps15 rps15 129018 129290 -1 273 SSC 0.000000 0 0 15 14 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_124 igs rps15|ycf1 rps15-ycf1 129291 129685 0 395 SSC 0.013502 10 0 288 258 yes 1.000000 4 1.000000 0.013502 1.000000 63.700000 ycf1 gene ycf1 ycf1 129686 135109 -1 5424 SSC 0.004406 45 27 27 159 no 1.000000 4 1.000000 0.004411 0.997235 43.100000 IGS_125 igs ycf1|trnN ycf1-trnN 135110 135468 0 359 IRa 0.001393 1 0 300 300 no 0.250000 2 0.500000 0.001393 1.000000 40.600000 trnN tRNA trnN trnN 135469 135540 1 72 IRa 0.000000 0 0 199 300 no 0.000000 1 0.000000 0.000000 1.000000 33.700000 IGS_126 igs trnN|trnR trnN-trnR 135541 136132 0 592 IRa 0.000000 0 0 271 300 no 0.000000 1 0.000000 0.000000 1.000000 39.800000 trnR tRNA trnR trnR 136133 136206 -1 74 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_127 igs trnR|rrn5S trnR-rrn5S 136207 136459 0 253 IRa 0.000000 0 1 300 300 no 0.250000 2 0.500000 0.000000 0.996047 38.800000 rrn5S rRNA rrn5S rrn5S 136460 136580 -1 121 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_128 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 136581 136836 0 256 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 136837 136939 -1 103 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_129 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 136940 137043 0 104 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 137044 139853 -1 2810 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_130 igs rrn23S|trnA rrn23S-trnA 139854 140020 0 167 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 140021 140055 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 140868 140905 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_133 igs trnA|trnI trnA-trnI 140906 140969 0 64 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 140970 141004 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 141959 141995 -1 37 IRa 0.000000 0 0 300 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_136 igs trnI|rrn16S trnI-rrn16S 141996 142294 0 299 IRa 0.001672 1 0 300 300 no 0.250000 2 0.500000 0.001672 1.000000 39.600000 rrn16S rRNA rrn16S rrn16S 142295 143785 -1 1491 IRa 0.000000 0 0 281 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_137 igs rrn16S|trnV rrn16S-trnV 143786 144012 0 227 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_138 igs trnV|rps12 trnV-rps12 144085 145786 0 1702 IRa 0.000882 3 7 300 300 no 1.000000 4 1.000000 0.000884 0.999412 59.400000 rps12_part2 gene rps12 rps12 145787 146580 1 794 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_139 igs rps12|rps7 rps12-rps7 146581 146633 0 53 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 146634 147101 1 468 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_140 igs rps7|ndhB rps7-ndhB 147102 147413 0 312 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.000000 ndhB gene ndhB ndhB 147414 149627 1 2214 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 38.500000 IGS_141 igs ndhB|trnL ndhB-trnL 149628 150227 0 600 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_142 igs trnL|ycf15 trnL-ycf15 150309 150870 0 562 IRa 0.000000 0 0 300 68 no 0.000000 1 0.000000 0.000000 1.000000 29.300000 ycf15 gene ycf15 ycf15 150871 151104 -1 234 IRa 0.002137 1 0 300 21 no 0.250000 2 0.500000 0.002137 1.000000 26.500000 IGS_143 igs ycf15|ycf2 ycf15-ycf2 151105 151251 0 147 IRa 0.003401 1 0 165 300 no 0.250000 2 0.500000 0.003401 1.000000 38.200000 ycf2 gene ycf2 ycf2 151252 158115 -1 6864 IRa 0.000437 6 6 125 223 no 1.000000 4 1.000000 0.000437 1.000000 47.300000 IGS_144 igs ycf2|trnI ycf2-trnI 158116 158203 0 88 IRa 0.000000 0 0 300 135 no 0.000000 1 0.000000 0.000000 1.000000 28.900000 IGS_145 igs trnI|rpl23 trnI-rpl23 158278 158442 0 165 IRa 0.003030 1 0 300 300 no 0.250000 2 0.500000 0.003030 1.000000 40.600000 rpl23 gene rpl23 rpl23 158443 158724 1 282 IRa 0.000000 0 0 103 300 no 0.000000 1 0.000000 0.000000 1.000000 26.500000 IGS_146 igs rpl23|rpl2 rpl23-rpl2 158725 158742 0 18 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 158743 160233 1 1491 IRa 0.000335 1 0 300 38 no 0.250000 2 0.500000 0.000335 1.000000 32.800000 IGS_147 igs rpl2|trnH-GUG rpl2-trnH-GUG 160234 97 0 183 LSC 0.020202 3 93 300 189 no 1.000000 4 1.000000 0.012518 0.530055 56.900000