Hotspot

clpP

LSC · 75866-77949 · 2084 bp

Back to Spathiphyllum

Pi 0.024

MarkerSeek score 59.50

Primer available yes

Label clpP

Feature Metadata

label_name: clpP
feature_type: gene
region: LSC
length_bp: 2084
variable_sites: 49
pi: 0.024
unique_haplotype_count: 2
primer_available: yes
alignment_reliability: 0.98
markerseek_score: 59.50

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
clpP_p1	GATTGGCTGTCTTGCGTTTC	CGCAATGGGGAATTGGTTTC	50.0	50.0	58.0	58.0	2524-2536 bp	1.0	82.8
clpP_p2	GATTGGCTGTCTTGCGTTTC	ACGAACATACCCTGTCTCCA	50.0	50.0	58.0	58.1	2930-2946 bp	1.0	82.0
clpP_p3	AGTCGCACATACACCCTAGT	CGCAATGGGGAATTGGTTTC	50.0	50.0	58.2	58.0	2601-2613 bp	1.0	81.8
clpP_p4	GATTGGCTGTCTTGCGTTTC	ACATTGGATCAAGAACGGGG	50.0	50.0	58.0	57.9	2911-2927 bp	1.0	81.5
clpP_p5	GATTGGCTGTCTTGCGTTTC	CATTGGATCAAGAACGGGGT	50.0	50.0	58.0	57.9	2910-2926 bp	1.0	81.5