primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score HRV17_pgt001-psbA_p1 HRV17_pgt001-psbA 1 GATCCACTTGGCTACATCCG CCGTGCTAACCTTGGTATGG 20 20 55.0 55.0 58.1 58.3 0.0 0.0 0.465225 78 478 519-550 1.000000 81.9 HRV17_pgt001-psbA_p2 HRV17_pgt001-psbA 2 CAATCCACTGCCTTGATCCA CCGTGCTAACCTTGGTATGG 20 20 50.0 55.0 57.9 58.3 0.0 0.0 0.469587 78 478 533-564 1.000000 81.7 HRV17_pgt001-psbA_p3 HRV17_pgt001-psbA 3 AATCCACTGCCTTGATCCAC CCGTGCTAACCTTGGTATGG 20 20 50.0 55.0 57.9 58.3 0.0 0.0 0.471094 78 478 532-563 1.000000 81.7 HRV17_pgt001-psbA_p4 HRV17_pgt001-psbA 4 ACAATCCACTGCCTTGATCC CCGTGCTAACCTTGGTATGG 20 20 50.0 55.0 57.9 58.3 0.0 0.0 0.471094 78 478 534-565 1.000000 81.7 HRV17_pgt001-psbA_p5 HRV17_pgt001-psbA 5 GATCCACTTGGCTACATCCG ACCGTGCTAACCTTGGTATG 20 20 55.0 50.0 58.1 57.6 0.0 0.0 0.525510 78 478 520-551 1.000000 81.4 HRV17_pgt005-petN_p1 HRV17_pgt005-petN 1 TTTCCCCAGTTCAAATCCGG AGCCCAAGCGAGACTTACTA 20 20 50.0 50.0 58.1 58.2 0.0 0.0 0.233476 9487 10158 729-885 1.000000 83.0 HRV17_pgt005-petN_p2 HRV17_pgt005-petN 2 GGGGGACTGCAAATCCTTTT AGCCCAAGCGAGACTTACTA 20 20 50.0 50.0 58.4 58.2 14.7 0.0 0.506839 9487 10158 747-903 1.000000 80.7 HRV17_pgt005-petN_p3 HRV17_pgt005-petN 3 TTTCCCCAGTTCAAATCCGG GCCCAAGCGAGACTTACTAT 20 20 50.0 50.0 58.1 57.1 0.0 0.0 0.974912 9487 10158 728-884 1.000000 77.0 HRV17_pgt005-petN_p4 HRV17_pgt005-petN 4 TTTCCCCAGTTCAAATCCGG ATTAAAGCAGCCCAAGCGAG 20 20 50.0 50.0 58.1 58.9 0.0 0.0 0.984078 9487 10158 737-893 1.000000 76.9 HRV17_pgt005-petN_p5 HRV17_pgt005-petN 5 ATTGTGTATCGTTTTGGCGG AGCCCAAGCGAGACTTACTA 20 20 45.0 50.0 57.1 58.2 0.0 0.0 1.063167 9487 10158 786-942 1.000000 76.2 petN-psbM_p1 petN-psbM 1 TAGTAAGTCTCGCTTGGGCT TGCTACTGCACTGTTCATTT 20 20 50.0 40.0 58.2 55.6 0.0 0.0 2.573941 10249 10731 641-649 1.000000 63.3 petN-psbM_p2 petN-psbM 2 TAGTAAGTCTCGCTTGGGCT TGCTACTGCACTGTTCATTTT 20 21 50.0 38.1 58.2 56.4 0.0 0.0 2.785752 10249 10731 641-649 1.000000 61.6 petN-psbM_p3 petN-psbM 3 ATAGTAAGTCTCGCTTGGGC TGCTACTGCACTGTTCATTT 20 20 50.0 40.0 57.1 55.6 0.0 0.0 3.315377 10249 10731 642-650 1.000000 57.3 petN-psbM_p4 petN-psbM 4 CTCGCTTGGGCTGCTTTAAT TGCTACTGCACTGTTCATTT 20 20 50.0 40.0 58.9 55.6 0.0 0.0 3.324543 10249 10731 633-641 1.000000 57.3 petN-psbM_p5 petN-psbM 5 TGGGCTGCTTTAATGGTAGTC TGCTACTGCACTGTTCATTT 21 20 47.6 40.0 58.0 55.6 0.0 0.0 3.423261 10249 10731 627-635 1.000000 56.6 HRV17_pgt008-rpoB_p1 HRV17_pgt008-rpoB 1 GGGACTTGAACCCTCGTTTT AGTTCTTCTGTCAAACCCTGA 20 21 50.0 42.9 58.0 56.8 0.0 0.0 2.237066 12000 12914 1034-1079 1.000000 67.8 HRV17_pgt008-rpoB_p2 HRV17_pgt008-rpoB 2 TAACCACTGGACCATAGGGG AGTTCTTCTGTCAAACCCTGA 20 21 55.0 42.9 58.1 56.8 14.8 0.0 2.326325 12000 12914 993-1038 1.000000 67.4 HRV17_pgt008-rpoB_p3 HRV17_pgt008-rpoB 3 CCCTCGTTTTCTCCGTGAAA AGTTCTTCTGTCAAACCCTGA 20 21 50.0 42.9 58.1 56.8 0.0 0.0 2.340425 12000 12914 1024-1069 1.000000 67.1 HRV17_pgt008-rpoB_p4 HRV17_pgt008-rpoB 4 TTGAACCCTCGTTTTCTCCG AGTTCTTCTGTCAAACCCTGA 20 21 50.0 42.9 58.1 56.8 0.0 0.0 2.340425 12000 12914 1029-1074 1.000000 67.0 HRV17_pgt008-rpoB_p5 HRV17_pgt008-rpoB 5 GGGACTTGAACCCTCGTTTT TCAAACCCTGATCAATGAACCT 20 22 50.0 40.9 58.0 57.6 0.0 0.0 2.409970 12000 12914 1024-1069 1.000000 66.5 atpA-HRV17_pgt009_p1 atpA-HRV17_pgt009 1 TACTTCAGGAACAAGCAGCC GCAATGAAAAGCGTCCATTGT 20 21 50.0 42.9 57.8 58.3 0.0 20.2 1.508929 29726 29856 200-240 1.000000 75.8 atpA-HRV17_pgt009_p2 atpA-HRV17_pgt009 2 CATTCACCGAGGAAGCAGAA GCAATGAAAAGCGTCCATTGT 20 21 50.0 42.9 57.9 58.3 0.0 20.2 1.423066 29726 29856 263-303 1.000000 75.6 atpA-HRV17_pgt009_p3 atpA-HRV17_pgt009 3 AAGACATTCACCGAGGAAGC GCAATGAAAAGCGTCCATTGT 20 21 50.0 42.9 57.9 58.3 0.0 20.2 1.424529 29726 29856 267-307 1.000000 75.6 atpA-HRV17_pgt009_p4 atpA-HRV17_pgt009 4 CATTCACCGAGGAAGCAGAA GCAATGAAAAGCGTCCATTG 20 20 50.0 45.0 57.9 56.6 0.0 17.2 1.525779 29726 29856 263-303 1.000000 74.8 atpA-HRV17_pgt009_p5 atpA-HRV17_pgt009 5 AAGACATTCACCGAGGAAGC GCAATGAAAAGCGTCCATTG 20 20 50.0 45.0 57.9 56.6 0.0 17.2 1.527243 29726 29856 267-307 1.000000 74.8 ycf3-HRV17_pgt014_p1 ycf3-HRV17_pgt014 1 CATTTATCCGCGATCTAGGCA ACGGAAAGAGAGGGATTCGA 21 20 47.6 50.0 58.0 58.2 8.2 0.0 1.191833 44113 45032 967-1036 1.000000 76.6 ycf3-HRV17_pgt014_p2 ycf3-HRV17_pgt014 2 CATTTATCCGCGATCTAGGCA TTCCAATGCTACGCCTTCAA 21 20 47.6 45.0 58.0 57.8 8.2 0.0 1.233148 44113 45032 917-986 1.000000 76.3 ycf3-HRV17_pgt014_p3 ycf3-HRV17_pgt014 3 CATTTATCCGCGATCTAGGCA GGATTCGAACCCTCGGTAAG 21 20 47.6 55.0 58.0 57.8 8.2 0.0 1.260963 44113 45032 955-1024 1.000000 76.0 ycf3-HRV17_pgt014_p4 ycf3-HRV17_pgt014 4 CATTTATCCGCGATCTAGGCA AGTTCCAATGCTACGCCTTC 21 20 47.6 50.0 58.0 58.3 8.2 0.0 1.301418 44113 45032 919-988 1.000000 75.8 ycf3-HRV17_pgt014_p5 ycf3-HRV17_pgt014 5 CATTTATCCGCGATCTAGGCA CCTCGGTAAGCAAAAGCCTA 21 20 47.6 50.0 58.0 57.6 8.2 0.0 1.437074 44113 45032 945-1014 1.000000 74.7 HRV17_pgt015-HRV17_pgt016_p1 HRV17_pgt015-HRV17_pgt016 1 GCGATGCTCTAACCTCTGAG CCGTAGCGTCTACCGATTTC 20 20 55.0 55.0 57.9 58.2 0.0 10.2 0.381189 46474 47054 592-666 1.000000 84.3 HRV17_pgt015-HRV17_pgt016_p2 HRV17_pgt015-HRV17_pgt016 2 GGAATCGAACCGATGACCAT CCGTAGCGTCTACCGATTTC 20 20 50.0 55.0 57.8 58.2 15.5 10.2 0.488942 46474 47054 624-698 1.000000 83.3 HRV17_pgt015-HRV17_pgt016_p3 HRV17_pgt015-HRV17_pgt016 3 GCGATGCTCTAACCTCTGAG CGTCTACCGATTTCGCCATA 20 20 55.0 50.0 57.9 57.6 0.0 0.0 0.543526 46474 47054 586-660 1.000000 83.0 HRV17_pgt015-HRV17_pgt016_p4 HRV17_pgt015-HRV17_pgt016 4 GGAATCGAACCGATGACCAT CGTCTACCGATTTCGCCATA 20 20 50.0 50.0 57.8 57.6 15.5 0.0 0.651279 46474 47054 618-692 1.000000 82.0 HRV17_pgt015-HRV17_pgt016_p5 HRV17_pgt015-HRV17_pgt016 5 GCGATGCTCTAACCTCTGAG CGTAGCGTCTACCGATTTCG 20 20 55.0 55.0 57.9 58.6 0.0 10.2 0.749620 46474 47054 591-665 1.000000 81.4 HRV17_pgt017-ndhJ_p1 HRV17_pgt017-ndhJ 1 CCTCGTGTCACCAGTTCAAA TGGATAGGATGGCCTTTACG 20 20 50.0 50.0 58.1 56.8 0.0 3.3 1.273485 47988 48577 507-734 1.000000 75.9 HRV17_pgt017-ndhJ_p2 HRV17_pgt017-ndhJ 2 CCTCGTGTCACCAGTTCAAA GGATAGGATGGCCTTTACGT 20 20 50.0 50.0 58.1 56.8 0.0 3.3 1.275704 47988 48577 506-733 1.000000 75.9 HRV17_pgt017-ndhJ_p3 HRV17_pgt017-ndhJ 3 CCTCGTGTCACCAGTTCAAA TGAAAGTTGGATAGGATGGCC 20 21 50.0 47.6 58.1 57.7 0.0 0.0 1.349030 47988 48577 514-741 1.000000 75.3 HRV17_pgt017-ndhJ_p4 HRV17_pgt017-ndhJ 4 CCTCGTGTCACCAGTTCAAA TTGGATAGGATGGCCTTTACG 20 21 50.0 47.6 58.1 57.5 0.0 3.3 1.537359 47988 48577 508-735 1.000000 73.8 HRV17_pgt017-ndhJ_p5 HRV17_pgt017-ndhJ 5 CCTCGTGTCACCAGTTCAAA TGGATAGGATGGCCTTTACGT 20 21 50.0 47.6 58.1 58.6 0.0 3.3 1.647337 47988 48577 507-734 1.000000 72.9 ndhC-HRV17_pgt018_p1 ndhC-HRV17_pgt018 1 TCCTTTGCTACTCGGAGCTA CCGAGAAAGTCTACGGTTCG 20 20 50.0 55.0 57.9 58.1 4.6 0.0 0.246856 50250 51464 1334-1396 1.000000 83.9 ndhC-HRV17_pgt018_p2 ndhC-HRV17_pgt018 2 ACTCGGAGCTAAAAATCCCG CCGAGAAAGTCTACGGTTCG 20 20 50.0 55.0 57.7 58.1 4.6 0.0 0.418656 50250 51464 1325-1387 1.000000 82.6 ndhC-HRV17_pgt018_p3 ndhC-HRV17_pgt018 3 TTCTCCGGTCCTTTGCTACT CCGAGAAAGTCTACGGTTCG 20 20 50.0 55.0 58.4 58.1 0.0 0.0 0.466616 50250 51464 1342-1404 1.000000 82.1 ndhC-HRV17_pgt018_p4 ndhC-HRV17_pgt018 4 TTTCTCCGGTCCTTTGCTAC CCGAGAAAGTCTACGGTTCG 20 20 50.0 55.0 57.5 58.1 0.0 0.0 0.575098 50250 51464 1343-1405 1.000000 81.3 ndhC-HRV17_pgt018_p5 ndhC-HRV17_pgt018 5 CTCGGAGCTAAAAATCCCGA CCGAGAAAGTCTACGGTTCG 20 20 50.0 55.0 57.4 58.1 9.7 0.0 0.704436 50250 51464 1324-1386 1.000000 80.3 petA-psbJ_p1 petA-psbJ 1 ACGTGTACAAGGCCTTTTGT ATTCCGGATTGGGTTCATCC 20 20 45.0 50.0 58.0 57.6 17.6 4.1 0.411974 63093 63867 897-919 1.000000 81.7 petA-psbJ_p2 petA-psbJ 2 ACGTGTACAAGGCCTTTTGT TGTGATCGGTTTAGTAGGCG 20 20 45.0 50.0 58.0 57.4 17.6 0.0 0.619192 63093 63867 935-957 1.000000 79.9 petA-psbJ_p3 petA-psbJ 3 ACGTGTACAAGGCCTTTTGT GTGATCGGTTTAGTAGGCGT 20 20 45.0 50.0 58.0 57.4 17.6 0.0 0.620943 63093 63867 934-956 1.000000 79.8 petA-psbJ_p4 petA-psbJ 4 TCCATTACGTGTACAAGGCC ATTCCGGATTGGGTTCATCC 20 20 50.0 50.0 57.6 57.6 13.5 4.1 0.754934 63093 63867 903-925 1.000000 78.9 petA-psbJ_p5 petA-psbJ 5 CCATTACGTGTACAAGGCCT ATTCCGGATTGGGTTCATCC 20 20 50.0 50.0 57.6 57.6 13.5 4.1 0.761562 63093 63867 902-924 1.000000 78.9 HRV17_pgp043_p1 HRV17_pgp043 1 TTGTTCGATGAGCAGATCCA TCTGGATCCAAAGAATCAGTCA 20 22 45.0 40.9 56.9 56.8 0.0 17.0 4.241922 82323 82442 298-351 1.000000 53.9 HRV17_pgp043_p2 HRV17_pgp043 2 TGTTCGATGAGCAGATCCAT TCTGGATCCAAAGAATCAGTCA 20 22 45.0 40.9 56.7 56.8 0.0 17.0 4.471144 82323 82442 297-350 1.000000 52.1 HRV17_pgp043_p3 HRV17_pgp043 3 TTGTTCGATGAGCAGATCCA TGGATCCAAAGAATCAGTCAAGA 20 23 45.0 39.1 56.9 57.5 0.0 13.5 4.560823 82323 82442 296-349 1.000000 51.4 HRV17_pgp043_p4 HRV17_pgp043 4 TTGTTCGATGAGCAGATCCA TCTGGATCCAAAGAATCAGTCAA 20 23 45.0 39.1 56.9 57.5 0.0 17.0 4.560823 82323 82442 298-351 1.000000 51.3 HRV17_pgp043_p5 HRV17_pgp043 5 TTGTTCGATGAGCAGATCCA AACCAACTCATCACTTCGTA 20 20 45.0 40.0 56.9 54.3 0.0 0.0 4.718473 82323 82442 321-374 1.000000 49.8 ndhD-ccsA_p1 ndhD-ccsA 1 TCGATCGCCATTTTTCTACCT TGGCGACTCTAGGCTTTCTT 21 20 42.9 50.0 57.5 58.7 11.1 0.0 2.269834 121653 121915 471-492 1.000000 67.2 ndhD-ccsA_p2 ndhD-ccsA 2 CGATCGCCATTTTTCTACCTG TGGCGACTCTAGGCTTTCTT 21 20 47.6 50.0 57.4 58.7 0.3 0.0 2.325260 121653 121915 470-491 1.000000 66.8 ndhD-ccsA_p3 ndhD-ccsA 3 TCAGTTGACAAGGTTGAAGGT TGGCGACTCTAGGCTTTCTT 21 20 42.9 50.0 57.4 58.7 0.0 0.0 2.377845 121653 121915 408-429 1.000000 66.7 ndhD-ccsA_p4 ndhD-ccsA 4 TCGATCGCCATTTTTCTACCT CAATTGTGGCGACTCTAGGC 21 20 42.9 55.0 57.5 59.0 11.1 0.0 2.527127 121653 121915 477-498 1.000000 65.1 ndhD-ccsA_p5 ndhD-ccsA 5 TCGATCGCCATTTTTCTACCT GCAATTGTGGCGACTCTAGG 21 20 42.9 55.0 57.5 59.0 11.1 7.4 2.527127 121653 121915 478-499 0.941176 62.2 rpl32-ndhF_p1 rpl32-ndhF 1 CCGCCCAATATCCTTTCCTT GTTGCCGTCGGAAAAAGAAG 20 20 50.0 50.0 57.6 58.0 0.0 17.5 0.397386 123784 124865 1140-1270 1.000000 83.5 rpl32-ndhF_p2 rpl32-ndhF 2 CCGCCCAATATCCTTTCCTT TGCCGTCGGAAAAAGAAGAA 20 20 50.0 45.0 57.6 58.0 0.0 17.5 0.408676 123784 124865 1138-1268 1.000000 83.4 rpl32-ndhF_p3 rpl32-ndhF 3 CCGCCCAATATCCTTTCCTT TTGCCGTCGGAAAAAGAAGA 20 20 50.0 45.0 57.6 58.0 0.0 17.5 0.408676 123784 124865 1139-1269 1.000000 83.4 rpl32-ndhF_p4 rpl32-ndhF 4 CCGCCCAATATCCTTTCCTT TAGGAACTGGGAGTGGAAGG 20 20 50.0 55.0 57.6 58.0 0.0 0.0 0.412351 123784 124865 1100-1230 1.000000 83.4 rpl32-ndhF_p5 rpl32-ndhF 5 TGACAAAGCTTTTAACGCCG GTTGCCGTCGGAAAAAGAAG 20 20 45.0 50.0 57.6 58.0 9.5 17.5 0.425347 123784 124865 1157-1287 1.000000 83.2