Hotspot

petA-psbJ

LSC · 62681-63683 · 1003 bp

Back to Schizostachyum

Pi 0.00634

MarkerSeek score 64.10

Primer available yes

Label petA-psbJ

Feature Metadata

label_name: petA-psbJ
feature_type: igs
region: LSC
length_bp: 1003
variable_sites: 9
pi: 0.00634
unique_haplotype_count: 3
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 64.10

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
petA-psbJ_p1	GCGTCCAAGGCCTTTTATTC	TCCTCTTTGGCTGATAGGTACT	50.0	45.5	57.4	58.0	1200-1213 bp	1.0	60.9
petA-psbJ_p2	GCGTCCAAGGCCTTTTATTC	CCTCTTTGGCTGATAGGTACTG	50.0	50.0	57.4	57.9	1199-1212 bp	1.0	60.4
petA-psbJ_p3	GCGTCCAAGGCCTTTTATTC	ACGGTTCATATTCTGGATTGGG	50.0	45.5	57.4	58.2	1135-1148 bp	1.0	59.6
petA-psbJ_p4	GCGTCCAAGGCCTTTTATTC	CGGTTCATATTCTGGATTGGGT	50.0	45.5	57.4	58.2	1134-1147 bp	1.0	59.6
petA-psbJ_p5	GCGTCCAAGGCCTTTTATTC	TTCCTCTTTGGCTGATAGGT	50.0	45.0	57.4	55.8	1201-1214 bp	1.0	59.5