feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH-GUG tRNA trnH-GUG trnH-GUG 7 80 -1 74 LSC 0.002703 1 0 300 66 no 0.100000 2 0.500000 0.002703 1.000000 28.500000 IGS_001 igs trnH-GUG|psbA trnH-GUG-psbA 81 447 0 367 LSC 0.022949 29 82 300 300 yes 0.800000 9 0.888889 0.024384 1.000000 75.900000 psbA gene psbA psbA 448 1509 -1 1062 LSC 0.001883 10 0 128 164 no 0.200000 3 0.666667 0.001883 1.000000 40.400000 IGS_002 igs psbA|trnK-UUU psbA-trnK-UUU 1510 1741 0 232 LSC 0.015421 11 2 300 124 no 0.400000 6 0.666667 0.015466 1.000000 49.500000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1742 1776 -1 35 LSC 0.000000 0 0 8 89 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 matK gene matK matK 2076 3596 -1 1521 LSC 0.005157 31 12 209 72 no 0.800000 9 0.888889 0.005133 1.000000 51.200000 IGS_005 igs matK|trnK-UUU matK-trnK-UUU 3597 4310 0 714 LSC 0.005042 12 2 300 37 no 0.100000 4 0.250000 0.005050 1.000000 34.300000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 4311 4347 -1 37 LSC 0.000000 0 0 300 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_006 igs trnK-UUU|rps16 trnK-UUU-rps16 4348 5140 0 793 LSC 0.007044 18 45 300 147 yes 0.600000 8 0.750000 0.007069 0.950820 57.500000 rps16 gene rps16 rps16 5141 6251 -1 1111 LSC 0.008511 32 17 123 145 yes 1.000000 10 1.000000 0.008448 1.000000 62.300000 IGS_007 igs rps16|trnQ-UUG rps16-trnQ-UUG 6252 7966 0 1715 LSC 0.006275 47 15 99 272 no 0.500000 7 0.714286 0.006308 0.999417 48.600000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 7967 8038 -1 72 LSC 0.000000 0 0 238 200 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_008 igs trnQ-UUG|psbK trnQ-UUG-psbK 8039 8387 0 349 LSC 0.009169 14 3 300 197 no 0.300000 5 0.600000 0.009212 1.000000 50.400000 psbK gene psbK psbK 8388 8582 1 195 LSC 0.002051 2 0 148 2 no 0.100000 2 0.500000 0.002051 1.000000 23.000000 IGS_009 igs psbK|psbI psbK-psbI 8583 8932 0 350 LSC 0.005158 6 4 300 300 no 0.400000 6 0.666667 0.005168 0.997143 48.000000 psbI gene psbI psbI 8933 9043 1 111 LSC 0.000000 0 0 91 291 no 0.000000 1 0.000000 0.000000 1.000000 25.600000 IGS_010 igs psbI|trnS-GCU psbI-trnS-GCU 9044 9175 0 132 LSC 0.001515 1 12 202 159 no 0.200000 3 0.666667 0.001532 1.000000 42.000000 trnS-GCU tRNA trnS-GCU trnS-GCU 9176 9263 -1 88 LSC 0.000000 0 0 300 71 no 0.000000 1 0.000000 0.000000 1.000000 24.100000 IGS_011 igs trnS-GCU|trnG-UCC trnS-GCU-trnG-UCC 9264 9827 0 564 LSC 0.006895 17 10 300 300 no 0.400000 6 0.666667 0.006352 1.000000 55.700000 trnG-UCC_part1 tRNA trnG-UCC trnG-UCC 9828 9850 1 23 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnG-UCC_part2 tRNA trnG-UCC trnG-UCC 10546 10592 1 47 LSC 0.000000 0 0 300 74 no 0.000000 1 0.000000 0.000000 1.000000 24.300000 IGS_014 igs trnG-UCC|trnR-UCU trnG-UCC-trnR-UCU 10593 10817 0 225 LSC 0.007210 8 39 300 118 no 0.400000 5 0.800000 0.008152 1.000000 48.500000 trnR-UCU tRNA trnR-UCU trnR-UCU 10818 10889 1 72 LSC 0.000000 0 0 150 46 no 0.000000 1 0.000000 0.000000 1.000000 22.200000 IGS_015 igs trnR-UCU|atpA trnR-UCU-atpA 10890 11057 0 168 LSC 0.008862 6 21 222 300 no 0.300000 5 0.600000 0.009191 1.000000 53.600000 atpA gene atpA atpA 11058 12599 -1 1542 LSC 0.002162 15 0 27 300 no 0.600000 7 0.857143 0.002162 1.000000 40.400000 IGS_016 igs atpA|atpF atpA-atpF 12600 12649 0 50 LSC 0.004000 1 0 300 291 no 0.100000 2 0.500000 0.004000 1.000000 39.900000 atpF gene atpF atpF 12650 13906 -1 1257 LSC 0.004314 17 13 300 6 no 0.800000 9 0.888889 0.004340 1.000000 45.300000 IGS_017 igs atpF|atpH atpF-atpH 13907 14071 0 165 LSC 0.009764 5 13 300 300 yes 0.500000 7 0.714286 0.008732 1.000000 57.300000 atpH gene atpH atpH 14072 14317 -1 246 LSC 0.001626 2 0 76 107 no 0.200000 3 0.666667 0.001626 1.000000 29.900000 IGS_018 igs atpH|atpI atpH-atpI 14318 15403 0 1086 LSC 0.007858 33 29 300 156 no 0.500000 7 0.714286 0.007988 1.000000 56.700000 atpI gene atpI atpI 15404 16147 -1 744 LSC 0.003405 10 0 95 114 no 0.200000 4 0.500000 0.003405 1.000000 39.100000 IGS_019 igs atpI|rps2 atpI-rps2 16148 16342 0 195 LSC 0.006952 6 0 300 33 no 0.400000 5 0.800000 0.006952 1.000000 35.700000 rps2 gene rps2 rps2 16343 17053 -1 711 LSC 0.002157 6 0 80 15 no 0.300000 5 0.600000 0.002157 1.000000 33.800000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 17054 17210 0 157 LSC 0.018259 6 1 300 300 yes 0.800000 9 0.888889 0.015210 1.000000 62.500000 rpoC2 gene rpoC2 rpoC2 17211 21356 -1 4146 LSC 0.003253 50 0 126 300 no 0.700000 8 0.875000 0.003253 1.000000 45.600000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 21357 21533 0 177 LSC 0.003390 3 0 300 300 no 0.200000 3 0.666667 0.003390 1.000000 41.100000 rpoC1 gene rpoC1 rpoC1 21534 24330 -1 2797 LSC 0.003385 37 8 300 125 no 0.700000 8 0.875000 0.003387 1.000000 48.300000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 24331 24356 0 26 LSC 0.000000 0 0 269 99 no 0.000000 1 0.000000 0.000000 1.000000 26.200000 rpoB gene rpoB rpoB 24357 27575 -1 3219 LSC 0.003024 37 0 295 300 no 0.800000 9 0.888889 0.003024 1.000000 54.300000 IGS_023 igs rpoB|trnC-GCA rpoB-trnC-GCA 27576 28366 0 791 LSC 0.006321 21 5 131 230 no 0.400000 6 0.666667 0.006347 1.000000 49.300000 trnC-GCA tRNA trnC-GCA trnC-GCA 28367 28437 1 71 LSC 0.002817 1 0 19 159 no 0.100000 2 0.500000 0.002817 1.000000 25.100000 IGS_024 igs trnC-GCA|petN trnC-GCA-petN 28438 29209 0 772 LSC 0.006304 20 0 90 253 no 0.800000 9 0.888889 0.006304 1.000000 52.800000 petN gene petN petN 29210 29299 1 90 LSC 0.000000 0 0 300 163 no 0.000000 1 0.000000 0.000000 1.000000 31.000000 IGS_025 igs petN|psbM petN-psbM 29300 30383 0 1084 LSC 0.009205 41 10 300 300 yes 0.800000 9 0.888889 0.009233 1.000000 65.000000 psbM gene psbM psbM 30384 30497 -1 114 LSC 0.003509 2 0 36 212 no 0.200000 3 0.666667 0.003509 1.000000 29.000000 IGS_026 igs psbM|trnD-GUC psbM-trnD-GUC 30498 31441 0 944 LSC 0.004572 19 17 150 300 no 0.600000 7 0.857143 0.004605 0.993644 54.000000 trnD-GUC tRNA trnD-GUC trnD-GUC 31442 31515 -1 74 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_027 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 31516 31932 0 417 LSC 0.003846 8 3 300 300 no 0.400000 5 0.800000 0.003859 0.995204 48.500000 trnY-GUA tRNA trnY-GUA trnY-GUA 31933 32016 -1 84 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_028 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 32017 32075 0 59 LSC 0.016949 5 0 300 300 yes 0.300000 4 0.750000 0.016949 1.000000 57.600000 trnE-UUC tRNA trnE-UUC trnE-UUC 32076 32148 -1 73 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_029 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 32149 32919 0 771 LSC 0.005707 19 13 300 300 no 0.400000 6 0.666667 0.005738 1.000000 55.200000 trnT-GGU tRNA trnT-GGU trnT-GGU 32920 32991 1 72 LSC 0.000000 0 0 277 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_030 igs trnT-GGU|psbD trnT-GGU-psbD 32992 34347 0 1356 LSC 0.005375 33 8 300 300 yes 0.700000 8 0.875000 0.005364 1.000000 59.300000 psbD gene psbD psbD 34348 35409 1 1062 LSC 0.002323 8 0 300 300 no 0.300000 5 0.600000 0.002323 1.000000 47.600000 psbC gene psbC psbC 35357 36778 1 1422 LSC 0.001266 9 0 295 60 no 0.300000 4 0.750000 0.001266 1.000000 36.500000 IGS_032 igs psbC|trnS-UGA psbC-trnS-UGA 36779 36984 0 206 LSC 0.005178 4 0 300 166 no 0.200000 4 0.500000 0.005178 1.000000 39.700000 trnS-UGA tRNA trnS-UGA trnS-UGA 36985 37077 -1 93 LSC 0.002151 1 0 145 73 no 0.100000 2 0.500000 0.002151 1.000000 28.400000 IGS_033 igs trnS-UGA|psbZ trnS-UGA-psbZ 37078 37416 0 339 LSC 0.002029 3 49 238 292 no 0.300000 5 0.600000 0.001636 0.997050 47.200000 psbZ gene psbZ psbZ 37417 37605 1 189 LSC 0.003175 3 0 265 103 no 0.200000 3 0.666667 0.003175 1.000000 33.600000 IGS_034 igs psbZ|trnG-GCC psbZ-trnG-GCC 37606 37837 0 232 LSC 0.008142 4 9 300 174 no 0.100000 4 0.250000 0.008207 1.000000 44.200000 trnG-GCC tRNA trnG-GCC trnG-GCC 37838 37908 1 71 LSC 0.000000 0 0 36 103 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_035 igs trnG-GCC|trnfM-CAU trnG-GCC-trnfM-CAU 37909 38023 0 115 LSC 0.013889 5 11 107 300 no 0.400000 7 0.571429 0.013299 0.991304 51.500000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 38024 38096 -1 73 LSC 0.000000 0 0 8 300 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_036 igs trnfM-CAU|rps14 trnfM-CAU-rps14 38097 38243 0 147 LSC 0.002721 2 5 81 300 no 0.200000 3 0.666667 0.002732 1.000000 35.600000 rps14 gene rps14 rps14 38244 38546 -1 303 LSC 0.000660 1 0 228 300 no 0.100000 2 0.500000 0.000660 1.000000 36.400000 IGS_037 igs rps14|psaB rps14-psaB 38547 38686 0 140 LSC 0.001429 1 0 300 300 no 0.100000 2 0.500000 0.001429 1.000000 37.200000 psaB gene psaB psaB 38687 40891 -1 2205 LSC 0.001209 12 0 300 300 no 0.400000 6 0.666667 0.001209 1.000000 47.300000 IGS_038 igs psaB|psaA psaB-psaA 40892 40916 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 40917 43169 -1 2253 LSC 0.001706 15 0 300 300 no 0.400000 6 0.666667 0.001706 1.000000 47.500000 IGS_039 igs psaA|ycf3 psaA-ycf3 43170 43775 0 606 LSC 0.004840 10 0 300 284 no 0.300000 5 0.600000 0.004840 1.000000 49.900000 ycf3 gene ycf3 ycf3 43776 45721 -1 1946 LSC 0.002912 21 0 117 300 no 0.800000 9 0.888889 0.002912 1.000000 50.500000 IGS_040 igs ycf3|trnS-GGA ycf3-trnS-GGA 45722 46477 0 756 LSC 0.009612 30 74 110 300 yes 1.000000 10 1.000000 0.009775 1.000000 67.200000 trnS-GGA tRNA trnS-GGA trnS-GGA 46478 46564 1 87 LSC 0.000000 0 0 94 300 no 0.000000 1 0.000000 0.000000 1.000000 25.800000 IGS_041 igs trnS-GGA|rps4 trnS-GGA-rps4 46565 46866 0 302 LSC 0.001987 3 0 181 300 no 0.300000 4 0.750000 0.001987 1.000000 40.100000 rps4 gene rps4 rps4 46867 47472 -1 606 LSC 0.003630 11 0 300 300 no 0.300000 4 0.750000 0.003630 1.000000 49.500000 IGS_042 igs rps4|trnT-UGU rps4-trnT-UGU 47473 47830 0 358 LSC 0.004469 8 0 300 90 no 0.200000 3 0.666667 0.004469 1.000000 35.300000 trnT-UGU tRNA trnT-UGU trnT-UGU 47831 47903 -1 73 LSC 0.000000 0 0 300 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_043 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 47904 48380 0 477 LSC 0.006848 12 1 300 143 no 0.500000 7 0.714286 0.006853 1.000000 49.000000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 48381 48417 1 37 LSC 0.000000 0 0 172 106 no 0.000000 1 0.000000 0.000000 1.000000 26.700000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 48942 48991 1 50 LSC 0.000000 0 0 69 101 no 0.000000 1 0.000000 0.000000 1.000000 23.900000 IGS_046 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 48992 49357 0 366 LSC 0.006193 8 1 119 141 no 0.300000 5 0.600000 0.006205 1.000000 40.500000 trnF-GAA tRNA trnF-GAA trnF-GAA 49358 49430 1 73 LSC 0.000000 0 0 195 68 no 0.000000 1 0.000000 0.000000 1.000000 23.800000 IGS_047 igs trnF-GAA|ndhK trnF-GAA-ndhK 49431 49873 0 443 LSC 0.005117 7 5 268 92 no 0.300000 5 0.600000 0.005150 1.000000 39.900000 ndhK gene ndhK ndhK 49874 50407 -1 534 LSC 0.007309 15 18 58 200 no 0.500000 7 0.714286 0.007401 0.990637 47.900000 IGS_048 igs ndhK|ndhC ndhK-ndhC 50408 50445 0 38 LSC 0.000000 0 3 20 162 no 0.100000 2 0.500000 0.000000 1.000000 28.100000 ndhC gene ndhC ndhC 50446 50814 -1 369 LSC 0.005179 7 2 58 128 no 0.700000 8 0.875000 0.005193 0.997290 43.000000 IGS_049 igs ndhC|trnV-UAC ndhC-trnV-UAC 50815 51146 0 332 LSC 0.010308 11 5 185 300 no 0.700000 8 0.875000 0.010221 0.996988 57.000000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 51147 51183 -1 37 LSC 0.000000 0 0 23 300 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 51791 51829 -1 39 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_052 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 51830 52001 0 172 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnM-CAU tRNA trnM-CAU trnM-CAU 52002 52074 1 73 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_053 igs trnM-CAU|atpE trnM-CAU-atpE 52075 52285 0 211 LSC 0.000948 1 0 300 300 no 0.100000 2 0.500000 0.000948 1.000000 36.600000 atpE gene atpE atpE 52286 52687 -1 402 LSC 0.001493 3 0 300 300 no 0.200000 3 0.666667 0.001493 1.000000 41.200000 atpB gene atpB atpB 52684 54180 -1 1497 LSC 0.001959 12 0 300 157 no 0.400000 6 0.666667 0.001959 1.000000 46.200000 IGS_055 igs atpB|rbcL atpB-rbcL 54181 54885 0 705 LSC 0.007123 20 9 113 300 no 0.700000 8 0.875000 0.007088 0.995745 54.700000 rbcL gene rbcL rbcL 54886 56313 1 1428 LSC 0.001681 8 0 279 248 no 0.500000 7 0.714286 0.001681 1.000000 50.800000 IGS_056 igs rbcL|accD rbcL-accD 56314 56956 0 643 LSC 0.005853 17 23 300 249 yes 0.600000 7 0.857143 0.005913 0.986003 61.000000 accD gene accD accD 56957 58480 1 1524 LSC 0.003893 24 3 53 99 no 0.700000 8 0.875000 0.003897 1.000000 46.000000 IGS_057 igs accD|psaI accD-psaI 58481 59143 0 663 LSC 0.006076 18 68 19 300 no 0.500000 6 0.833333 0.006223 0.998492 47.800000 psaI gene psaI psaI 59144 59254 1 111 LSC 0.001802 1 0 171 300 no 0.100000 2 0.500000 0.001802 1.000000 35.400000 IGS_058 igs psaI|ycf4 psaI-ycf4 59255 59677 0 423 LSC 0.003783 8 8 282 260 no 0.300000 4 0.750000 0.003839 1.000000 48.300000 ycf4 gene ycf4 ycf4 59678 60232 1 555 LSC 0.003003 7 0 300 292 no 0.400000 6 0.666667 0.003003 1.000000 49.500000 IGS_059 igs ycf4|cemA ycf4-cemA 60233 60942 0 710 LSC 0.004194 10 365 294 300 yes 0.700000 8 0.875000 0.004687 1.000000 61.400000 cemA gene cemA cemA 60943 61632 1 690 LSC 0.003285 10 0 300 81 no 0.200000 4 0.500000 0.003285 1.000000 38.100000 IGS_060 igs cemA|petA cemA-petA 61633 61847 0 215 LSC 0.007132 6 8 293 300 no 0.200000 4 0.500000 0.007272 1.000000 48.700000 petA gene petA petA 61848 62816 1 969 LSC 0.001789 6 0 133 137 no 0.300000 5 0.600000 0.001789 1.000000 42.200000 IGS_061 igs petA|psbJ petA-psbJ 62817 63635 0 819 LSC 0.012534 30 189 135 256 yes 0.800000 9 0.888889 0.012918 1.000000 64.500000 psbJ gene psbJ psbJ 63636 63758 -1 123 LSC 0.000000 0 0 50 133 no 0.000000 1 0.000000 0.000000 1.000000 22.500000 IGS_062 igs psbJ|psbL psbJ-psbL 63759 63900 0 142 LSC 0.010329 6 0 173 253 no 0.100000 3 0.333333 0.010329 1.000000 43.500000 psbL gene psbL psbL 63901 64017 -1 117 LSC 0.000000 0 0 8 136 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_063 igs psbL|psbF psbL-psbF 64018 64039 0 22 LSC 0.000000 0 0 125 114 no 0.000000 1 0.000000 0.000000 1.000000 27.300000 psbF gene psbF psbF 64040 64159 -1 120 LSC 0.004444 1 0 147 300 no 0.000000 2 0.000000 0.004444 1.000000 32.800000 IGS_064 igs psbF|psbE psbF-psbE 64160 64168 0 9 LSC 0.000000 0 0 5 300 no 0.000000 1 0.000000 NA 1.000000 19.100000 psbE gene psbE psbE 64169 64420 -1 252 LSC 0.000794 1 0 14 300 no 0.100000 2 0.500000 0.000794 1.000000 22.500000 IGS_065 igs psbE|petL psbE-petL 64421 65657 0 1237 LSC 0.004276 24 23 266 41 no 0.500000 7 0.714286 0.004330 1.000000 44.100000 petL gene petL petL 65658 65753 1 96 LSC 0.004861 1 0 300 300 no 0.000000 2 0.000000 0.004861 1.000000 37.200000 IGS_066 igs petL|petG petL-petG 65754 65920 0 167 LSC 0.003593 3 0 54 175 no 0.100000 2 0.500000 0.003593 1.000000 28.500000 petG gene petG petG 65921 66034 1 114 LSC 0.000000 0 0 221 61 no 0.000000 1 0.000000 0.000000 1.000000 23.300000 IGS_067 igs petG|trnW-CCA petG-trnW-CCA 66035 66149 0 115 LSC 0.006377 2 0 300 236 no 0.100000 3 0.333333 0.006377 1.000000 40.700000 trnW-CCA tRNA trnW-CCA trnW-CCA 66150 66223 -1 74 LSC 0.002703 1 0 53 162 no 0.100000 2 0.500000 0.002703 1.000000 27.500000 IGS_068 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 66224 66407 0 184 LSC 0.005072 3 0 127 170 no 0.200000 4 0.500000 0.005072 1.000000 36.300000 trnP-UGG tRNA trnP-UGG trnP-UGG 66408 66481 -1 74 LSC 0.000000 0 0 21 96 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 IGS_069 igs trnP-UGG|psaJ trnP-UGG-psaJ 66482 66851 0 370 LSC 0.007748 8 0 95 80 yes 0.400000 6 0.666667 0.007748 1.000000 39.900000 psaJ gene psaJ psaJ 66852 66986 1 135 LSC 0.004938 2 0 121 9 no 0.100000 3 0.333333 0.004938 1.000000 25.400000 IGS_070 igs psaJ|rpl33 psaJ-rpl33 66987 67417 0 431 LSC 0.020211 22 5 54 300 no 0.500000 7 0.714286 0.020277 1.000000 51.800000 rpl33 gene rpl33 rpl33 67418 67621 1 204 LSC 0.002941 3 0 300 300 no 0.200000 3 0.666667 0.002941 1.000000 40.700000 IGS_071 igs rpl33|rps18 rpl33-rps18 67622 67801 0 180 LSC 0.003333 3 2 300 300 no 0.200000 3 0.666667 0.003349 1.000000 42.400000 rps18 gene rps18 rps18 67802 68107 1 306 LSC 0.000654 1 0 300 261 no 0.100000 2 0.500000 0.000654 1.000000 36.500000 IGS_072 igs rps18|rpl20 rps18-rpl20 68108 68257 0 150 LSC 0.006667 5 0 300 111 no 0.200000 3 0.666667 0.006667 1.000000 38.000000 rpl20 gene rpl20 rpl20 68258 68611 -1 354 LSC 0.003264 5 0 300 84 no 0.200000 4 0.500000 0.003264 1.000000 33.200000 IGS_073 igs rpl20|rps12 rpl20-rps12 68612 69402 0 791 LSC 0.003694 11 5 242 292 no 0.500000 7 0.714286 0.003701 0.994943 53.400000 rps12_part1 gene rps12 rps12 69403 69516 -1 114 LSC 0.000000 0 0 131 178 no 0.000000 1 0.000000 0.000000 1.000000 28.600000 IGS_074 igs rps12|clpP rps12-clpP 69517 69655 0 139 LSC 0.002878 2 0 245 39 no 0.200000 3 0.666667 0.002878 1.000000 28.500000 clpP gene clpP clpP 69656 71703 -1 2048 LSC 0.003613 30 4 300 63 no 0.600000 7 0.857143 0.003617 1.000000 43.500000 IGS_075 igs clpP|psbB clpP-psbB 71704 72156 0 453 LSC 0.005004 10 0 292 300 no 0.700000 8 0.875000 0.005004 1.000000 55.100000 psbB gene psbB psbB 72157 73683 1 1527 LSC 0.003755 20 0 300 300 no 0.400000 6 0.666667 0.003755 1.000000 50.800000 IGS_076 igs psbB|psbT psbB-psbT 73684 73872 0 189 LSC 0.001058 1 0 5 300 no 0.100000 2 0.500000 0.001058 1.000000 22.100000 psbT gene psbT psbT 73873 73980 1 108 LSC 0.001852 1 0 194 300 no 0.100000 2 0.500000 0.001852 1.000000 37.200000 IGS_077 igs psbT|psbN psbT-psbN 73981 74045 0 65 LSC 0.003077 1 0 300 248 no 0.100000 2 0.500000 0.003077 1.000000 38.900000 psbN gene psbN psbN 74046 74177 -1 132 LSC 0.000000 0 0 300 116 no 0.000000 1 0.000000 0.000000 1.000000 27.400000 IGS_078 igs psbN|psbH psbN-psbH 74178 74261 0 84 LSC 0.000000 0 0 300 32 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 psbH gene psbH psbH 74262 74501 1 240 LSC 0.003611 3 0 300 39 no 0.100000 3 0.333333 0.003611 1.000000 26.700000 IGS_079 igs psbH|petB psbH-petB 74502 74627 0 126 LSC 0.005291 2 24 207 69 no 0.200000 4 0.500000 0.005457 1.000000 37.700000 petB gene petB petB 74628 76075 1 1448 LSC 0.005332 24 76 86 69 no 0.300000 6 0.500000 0.004824 0.994475 45.800000 IGS_080 igs petB|petD petB-petD 76076 76261 0 186 LSC 0.006093 4 0 12 300 no 0.300000 5 0.600000 0.006093 1.000000 30.700000 petD gene petD petD 76262 77478 1 1217 LSC 0.001647 10 3 116 300 no 0.400000 5 0.800000 0.001647 0.997535 43.200000 IGS_081 igs petD|rpoA petD-rpoA 77479 77660 0 182 LSC 0.001099 1 0 300 300 no 0.100000 2 0.500000 0.001099 1.000000 36.800000 rpoA gene rpoA rpoA 77661 78668 -1 1008 LSC 0.003902 17 0 300 300 no 0.600000 7 0.857143 0.003902 1.000000 55.100000 IGS_082 igs rpoA|rps11 rpoA-rps11 78669 78725 0 57 LSC 0.003509 1 0 65 300 no 0.100000 2 0.500000 0.003509 1.000000 29.300000 rps11 gene rps11 rps11 78726 79142 -1 417 LSC 0.002398 5 0 122 300 no 0.300000 4 0.750000 0.002398 1.000000 38.500000 IGS_083 igs rps11|rpl36 rps11-rpl36 79143 79264 0 122 LSC 0.000000 0 0 300 250 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl36 gene rpl36 rpl36 79265 79378 -1 114 LSC 0.000000 0 0 300 136 no 0.000000 1 0.000000 0.000000 1.000000 28.900000 IGS_084 igs rpl36|infA rpl36-infA 79379 79515 0 137 LSC 0.014112 8 0 300 80 no 0.400000 6 0.666667 0.014112 1.000000 45.900000 infA gene infA infA 79516 79754 -1 239 LSC 0.014970 10 7 0 54 yes 0.400000 6 0.666667 0.015107 1.000000 41.800000 IGS_085 igs infA|rps8 infA-rps8 79755 79870 0 116 LSC 0.013985 4 1 15 300 no 0.300000 5 0.600000 0.014015 1.000000 37.200000 rps8 gene rps8 rps8 79871 80278 -1 408 LSC 0.004412 9 0 27 54 no 0.300000 4 0.750000 0.004412 1.000000 33.400000 IGS_086 igs rps8|rpl14 rps8-rpl14 80279 80406 0 128 LSC 0.010677 4 4 300 300 no 0.300000 5 0.600000 0.009986 1.000000 51.900000 rpl14 gene rpl14 rpl14 80407 80775 -1 369 LSC 0.001626 3 0 67 91 no 0.300000 4 0.750000 0.001626 1.000000 32.600000 IGS_087 igs rpl14|rpl16 rpl14-rpl16 80776 80888 0 113 LSC 0.015339 7 0 300 4 no 0.300000 5 0.600000 0.015339 1.000000 39.300000 rpl16 gene rpl16 rpl16 80889 82295 -1 1407 LSC 0.004312 22 102 21 162 no 0.800000 9 0.888889 0.004377 1.000000 51.500000 IGS_088 igs rpl16|rps3 rpl16-rps3 82296 82461 0 166 LSC 0.013655 10 1 169 300 no 0.300000 5 0.600000 0.013703 1.000000 51.500000 rps3 gene rps3 rps3 82462 83118 -1 657 LSC 0.006427 16 0 3 166 no 0.400000 6 0.666667 0.006427 1.000000 38.700000 rpl22 gene rpl22 rpl22 83103 83582 -1 480 LSC 0.006250 12 0 79 24 yes 0.300000 5 0.600000 0.006250 1.000000 35.900000 IGS_090 igs rpl22|rps19 rpl22-rps19 83583 83635 0 53 LSC 0.023899 5 0 119 21 no 0.300000 5 0.600000 0.023899 1.000000 48.500000 rps19 gene rps19 rps19 83636 83860 -1 225 LSC 0.009778 5 0 28 300 no 0.100000 4 0.250000 0.009778 1.000000 29.900000 IGS_091 igs rps19|rpl2 rps19-rpl2 83861 83970 0 110 IRb 0.000000 0 0 83 300 no 0.000000 1 0.000000 0.000000 1.000000 25.000000 rpl2 gene rpl2 rpl2 83971 85465 -1 1495 IRb 0.000773 5 0 193 300 no 0.200000 4 0.500000 0.000773 1.000000 44.000000 IGS_092 igs rpl2|rpl23 rpl2-rpl23 85466 85483 0 18 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 85484 85765 -1 282 IRb 0.000709 1 0 300 300 no 0.100000 2 0.500000 0.000709 1.000000 36.400000 IGS_093 igs rpl23|trnI-CAU rpl23-trnI-CAU 85766 85930 0 165 IRb 0.001212 1 5 300 300 no 0.100000 2 0.500000 0.001250 1.000000 40.600000 trnI-CAU tRNA trnI-CAU trnI-CAU 85931 86004 -1 74 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_094 igs trnI-CAU|ycf2 trnI-CAU-ycf2 86005 86092 0 88 IRb 0.000000 0 13 300 300 no 0.000000 2 0.000000 0.000000 1.000000 38.600000 ycf2 gene ycf2 ycf2 86093 92983 1 6891 IRb 0.000803 26 21 300 300 no 0.500000 7 0.714286 0.000804 1.000000 44.300000 IGS_095 igs ycf2|trnL-CAA ycf2-trnL-CAA 92984 94002 0 1019 IRb 0.002573 6 0 300 300 no 0.200000 4 0.500000 0.002573 1.000000 45.600000 trnL-CAA tRNA trnL-CAA trnL-CAA 94003 94084 -1 82 IRb 0.000000 0 0 67 300 no 0.000000 1 0.000000 0.000000 1.000000 23.800000 IGS_096 igs trnL-CAA|ndhB trnL-CAA-ndhB 94085 94626 0 542 IRb 0.002583 4 0 149 187 no 0.400000 6 0.666667 0.002583 1.000000 44.600000 ndhB gene ndhB ndhB 94627 96879 -1 2253 IRb 0.001529 13 10 117 300 no 0.400000 6 0.666667 0.001530 1.000000 41.700000 IGS_097 igs ndhB|rps7 ndhB-rps7 96880 97203 0 324 IRb 0.001852 3 0 300 121 no 0.100000 2 0.500000 0.001852 1.000000 32.200000 rps7 gene rps7 rps7 97204 97671 -1 468 IRb 0.001567 2 0 300 300 no 0.100000 3 0.333333 0.001567 1.000000 40.400000 IGS_098 igs rps7|rps12 rps7-rps12 97672 97730 0 59 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 97731 98524 -1 794 IRb 0.000924 2 0 300 300 no 0.100000 3 0.333333 0.000924 1.000000 42.600000 IGS_099 igs rps12|trnV-GAC rps12-trnV-GAC 98525 100341 0 1817 IRb 0.001137 9 13 140 217 no 0.500000 6 0.833333 0.001142 1.000000 46.200000 trnV-GAC tRNA trnV-GAC trnV-GAC 100342 100413 1 72 IRb 0.000000 0 0 113 145 no 0.000000 1 0.000000 0.000000 1.000000 27.200000 IGS_100 igs trnV-GAC|rrn16S trnV-GAC-rrn16S 100414 100640 0 227 IRb 0.002056 1 0 185 254 no 0.000000 2 0.000000 0.002056 1.000000 34.100000 rrn16S rRNA rrn16S rrn16S 100641 102131 1 1491 IRb 0.000373 2 0 81 300 no 0.100000 3 0.333333 0.000373 1.000000 33.300000 IGS_101 igs rrn16S|trnI-GAU rrn16S-trnI-GAU 102132 102431 0 300 IRb 0.000000 0 6 300 300 no 0.100000 2 0.500000 0.000000 1.000000 38.100000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 102432 102473 1 42 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 103423 103457 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_104 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 103458 103521 0 64 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 103522 103559 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 104357 104391 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_107 igs trnA-UGC|rrn23S trnA-UGC-rrn23S 104392 104562 0 171 IRb 0.000000 0 10 300 300 no 0.100000 3 0.333333 0.000000 0.970760 41.000000 rrn23S rRNA rrn23S rrn23S 104563 107370 1 2808 IRb 0.000332 3 0 300 300 no 0.200000 4 0.500000 0.000332 1.000000 41.300000 IGS_108 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 107371 107469 0 99 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 107470 107571 1 102 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_109 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 107572 107796 0 225 IRb 0.000889 1 0 300 159 no 0.100000 2 0.500000 0.000889 1.000000 33.500000 rrn5S rRNA rrn5S rrn5S 107797 107917 1 121 IRb 0.000000 0 0 300 38 no 0.000000 1 0.000000 0.000000 1.000000 21.600000 IGS_110 igs rrn5S|ccsA rrn5S-ccsA 107918 108143 0 226 IRb 0.009327 5 7 300 300 no 0.600000 8 0.750000 0.008745 0.995575 55.600000 ccsA gene ccsA ccsA 108144 109103 -1 960 SSC 0.007824 28 0 174 3 no 0.700000 8 0.875000 0.007824 1.000000 45.500000 IGS_111 igs ccsA|trnL-UAG ccsA-trnL-UAG 109104 109199 0 96 SSC 0.017361 7 0 29 204 no 0.300000 5 0.600000 0.017361 1.000000 43.500000 trnL-UAG tRNA trnL-UAG trnL-UAG 109200 109279 1 80 SSC 0.002500 1 0 92 124 no 0.100000 2 0.500000 0.002500 1.000000 30.200000 IGS_112 igs trnL-UAG|rpl32 trnL-UAG-rpl32 109280 110067 0 788 SSC 0.014737 49 79 172 63 yes 0.800000 9 0.888889 0.014258 0.997462 64.900000 rpl32 gene rpl32 rpl32 110068 110220 -1 153 SSC 0.006972 4 0 109 100 no 0.100000 3 0.333333 0.006972 1.000000 34.500000 IGS_113 igs rpl32|ndhD rpl32-ndhD 110221 110357 0 137 SSC 0.004542 3 7 89 166 no 0.200000 3 0.666667 0.004375 1.000000 40.000000 ndhD gene ndhD ndhD 110358 110737 -1 380 SSC 0.015029 20 8 36 300 no 0.800000 9 0.888889 0.015121 0.997368 54.000000 IGS_114 igs ndhD|psaC ndhD-psaC 110738 110836 0 99 SSC 0.036364 18 0 119 300 yes 0.100000 2 0.500000 0.036364 1.000000 58.400000 psaC gene psaC psaC 110837 111082 -1 246 SSC 0.000000 0 0 218 161 no 0.000000 1 0.000000 0.000000 1.000000 30.800000 IGS_115 igs psaC|ndhE psaC-ndhE 111083 111275 0 193 SSC 0.005527 4 1 300 124 no 0.100000 3 0.333333 0.005545 1.000000 35.600000 ndhE gene ndhE ndhE 111276 111535 -1 260 SSC 0.005470 7 5 31 182 no 0.500000 6 0.833333 0.005336 1.000000 38.600000 IGS_116 igs ndhE|ndhG ndhE-ndhG 111536 111739 0 204 SSC 0.007734 7 5 135 13 no 0.400000 5 0.800000 0.007819 1.000000 38.000000 ndhG gene ndhG ndhG 111740 112064 -1 325 SSC 0.009167 12 7 21 134 no 0.400000 6 0.666667 0.009184 0.984615 39.100000 IGS_117 igs ndhG|rps15 ndhG-rps15 112065 112251 0 187 SSC 0.009388 7 0 241 120 no 0.300000 5 0.600000 0.009388 1.000000 42.300000 rps15 gene rps15 rps15 112252 112524 -1 273 SSC 0.011559 12 6 52 135 no 0.200000 4 0.500000 0.011723 1.000000 39.800000 IGS_118 igs rps15|ycf1 rps15-ycf1 112525 112906 0 382 SSC 0.009133 16 5 20 234 no 0.600000 8 0.750000 0.009076 1.000000 44.100000 ycf1 gene ycf1 ycf1 112907 118603 -1 5697 SSC 0.006892 147 9 39 22 yes 1.000000 10 1.000000 0.006871 1.000000 45.700000 IGS_119 igs ycf1|trnN-GUU ycf1-trnN-GUU 118604 118916 0 313 SSC 0.011928 14 0 242 96 no 0.400000 6 0.666667 0.011928 1.000000 44.700000 trnN-GUU tRNA trnN-GUU trnN-GUU 118917 118988 1 72 SSC 0.002778 1 0 149 24 no 0.100000 2 0.500000 0.002778 1.000000 25.400000 IGS_120 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 118989 119505 0 517 SSC 0.014634 28 121 221 300 yes 0.500000 7 0.714286 0.014270 0.986460 66.000000 trnR-ACG tRNA trnR-ACG trnR-ACG 119506 119579 -1 74 SSC 0.008108 3 0 15 300 no 0.200000 3 0.666667 0.008108 1.000000 32.300000 IGS_121 igs trnR-ACG|rrn5S trnR-ACG-rrn5S 119580 119986 0 407 IRa 0.006866 9 28 89 300 yes 1.000000 10 1.000000 0.005142 0.970516 57.200000 rrn5S rRNA rrn5S rrn5S 119987 120107 -1 121 IRa 0.000000 0 0 48 300 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_122 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 120108 120332 0 225 IRa 0.000889 1 0 169 300 no 0.100000 2 0.500000 0.000889 1.000000 34.300000 rrn4.5S rRNA rrn4.5S rrn4.5S 120333 120434 -1 102 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_123 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 120435 120533 0 99 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 120534 123341 -1 2808 IRa 0.000332 3 0 300 300 no 0.200000 4 0.500000 0.000332 1.000000 41.300000 IGS_124 igs rrn23S|trnA-UGC rrn23S-trnA-UGC 123342 123512 0 171 IRa 0.000000 0 10 300 300 no 0.100000 3 0.333333 0.000000 0.970760 41.000000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 123513 123547 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 124345 124382 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_127 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 124383 124446 0 64 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 124447 124481 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 125431 125472 -1 42 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_130 igs trnI-GAU|rrn16S trnI-GAU-rrn16S 125473 125772 0 300 IRa 0.000000 0 6 300 300 no 0.100000 2 0.500000 0.000000 1.000000 38.100000 rrn16S rRNA rrn16S rrn16S 125773 127263 -1 1491 IRa 0.000373 2 0 300 81 no 0.100000 3 0.333333 0.000373 1.000000 33.300000 IGS_131 igs rrn16S|trnV-GAC rrn16S-trnV-GAC 127264 127490 0 227 IRa 0.002056 1 0 254 185 no 0.000000 2 0.000000 0.002056 1.000000 34.100000 trnV-GAC tRNA trnV-GAC trnV-GAC 127491 127562 -1 72 IRa 0.000000 0 0 145 113 no 0.000000 1 0.000000 0.000000 1.000000 27.200000 IGS_132 igs trnV-GAC|rps12 trnV-GAC-rps12 127563 129379 0 1817 IRa 0.001137 9 13 217 140 no 0.500000 6 0.833333 0.001142 1.000000 46.200000 rps12_part2 gene rps12 rps12 129380 130173 1 794 IRa 0.000924 2 0 300 300 no 0.100000 3 0.333333 0.000924 1.000000 42.600000 IGS_133 igs rps12|rps7 rps12-rps7 130174 130232 0 59 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 130233 130700 1 468 IRa 0.001567 2 0 300 300 no 0.100000 3 0.333333 0.001567 1.000000 40.400000 IGS_134 igs rps7|ndhB rps7-ndhB 130701 131024 0 324 IRa 0.001852 3 0 121 300 no 0.100000 2 0.500000 0.001852 1.000000 32.200000 ndhB gene ndhB ndhB 131025 133277 1 2253 IRa 0.001529 13 10 300 117 no 0.400000 6 0.666667 0.001530 1.000000 41.700000 IGS_135 igs ndhB|trnL-CAA ndhB-trnL-CAA 133278 133819 0 542 IRa 0.002583 4 0 187 149 no 0.400000 6 0.666667 0.002583 1.000000 44.600000 trnL-CAA tRNA trnL-CAA trnL-CAA 133820 133901 1 82 IRa 0.000000 0 0 300 67 no 0.000000 1 0.000000 0.000000 1.000000 23.800000 IGS_136 igs trnL-CAA|ycf2 trnL-CAA-ycf2 133902 134920 0 1019 IRa 0.002573 6 0 300 300 no 0.200000 4 0.500000 0.002573 1.000000 45.600000 ycf2 gene ycf2 ycf2 134921 141811 -1 6891 IRa 0.000803 26 21 300 300 no 0.500000 7 0.714286 0.000804 1.000000 44.300000 IGS_137 igs ycf2|trnI-CAU ycf2-trnI-CAU 141812 141899 0 88 IRa 0.000000 0 13 300 300 no 0.000000 2 0.000000 0.000000 1.000000 38.600000 trnI-CAU tRNA trnI-CAU trnI-CAU 141900 141973 1 74 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_138 igs trnI-CAU|rpl23 trnI-CAU-rpl23 141974 142138 0 165 IRa 0.001212 1 5 300 300 no 0.100000 2 0.500000 0.001250 1.000000 40.600000 rpl23 gene rpl23 rpl23 142139 142420 1 282 IRa 0.000709 1 0 300 300 no 0.100000 2 0.500000 0.000709 1.000000 36.400000 IGS_139 igs rpl23|rpl2 rpl23-rpl2 142421 142438 0 18 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 142439 143933 1 1495 IRa 0.000773 5 0 300 300 no 0.200000 4 0.500000 0.000773 1.000000 44.500000 IGS_140 igs rpl2|trnH-GUG rpl2-trnH-GUG 143934 6 0 174 IRa 0.000000 0 3 300 140 no 0.000000 2 0.000000 0.000000 0.982759 30.900000