feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score rrn5 rRNA rrn5 rrn5 1 110 -1 110 SSC 0.000000 0 0 19 300 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_001 igs rrn5|rnl rrn5-rnl 111 136 0 26 SSC 0.000000 0 0 129 300 no 0.000000 1 0.000000 0.000000 1.000000 28.400000 rnl rRNA rnl rnl 137 3080 -1 2944 SSC 0.001472 8 0 155 220 no 1.000000 4 1.000000 0.001472 1.000000 53.400000 IGS_002 igs rnl|trnA1 rnl-trnA1 3081 3136 0 56 SSC 0.000000 0 0 108 164 no 0.000000 1 0.000000 0.000000 1.000000 26.900000 trnA1 tRNA trnA1 trnA1 3137 3209 -1 73 SSC 0.000000 0 0 164 91 no 0.000000 1 0.000000 0.000000 1.000000 25.600000 IGS_003 igs trnA1|trnI trnA1-trnI 3210 3212 0 3 SSC 0.000000 0 0 237 88 no 0.000000 1 0.000000 NA 1.000000 25.400000 trnI tRNA trnI trnI 3213 3286 -1 74 SSC 0.000000 0 0 240 14 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_004 igs trnI|rns trnI-rns 3287 3404 0 118 SSC 0.019774 4 1 300 58 no 0.500000 3 0.666667 0.019846 1.000000 46.600000 rns rRNA rns rns 3405 4884 -1 1480 IRb 0.002027 5 0 55 46 no 1.000000 4 1.000000 0.002027 1.000000 48.500000 IGS_005 igs rns|ycf37 rns-ycf37 4885 5086 0 202 IRb 0.014851 5 0 300 17 no 0.500000 3 0.666667 0.014851 1.000000 39.200000 ycf37 gene ycf37 ycf37 5087 5626 -1 540 LSC 0.018210 17 0 16 45 no 0.500000 3 0.666667 0.018210 1.000000 46.500000 IGS_006 igs ycf37|psaM ycf37-psaM 5627 5773 0 147 LSC 0.006803 2 0 42 114 no 0.250000 2 0.500000 0.006803 1.000000 31.300000 psaM gene psaM psaM 5774 5866 1 93 LSC 0.000000 0 0 77 21 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 IGS_007 igs psaM|chlI psaM-chlI 5867 5998 0 132 LSC 0.018056 4 16 170 50 no 1.000000 4 1.000000 0.018295 0.909091 55.900000 chlI gene chlI chlI 5999 7021 1 1023 LSC 0.020202 39 0 1 1 no 0.500000 3 0.666667 0.020202 1.000000 48.300000 IGS_008 igs chlI|trnF chlI-trnF 7022 7147 0 126 LSC 0.043651 9 0 9 80 no 0.500000 3 0.666667 0.043651 1.000000 57.400000 trnF tRNA trnF trnF 7148 7220 1 73 LSC 0.000000 0 0 26 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_009 igs trnF|petB trnF-petB 7221 7273 0 53 LSC 0.009434 1 0 99 132 no 0.250000 2 0.500000 0.009434 1.000000 37.500000 petB gene petB petB 7274 7921 1 648 LSC 0.008745 11 0 45 249 no 0.500000 3 0.666667 0.008745 1.000000 43.800000 IGS_010 igs petB|petD petB-petD 7922 8006 0 85 LSC 0.000000 0 1 68 164 no 0.000000 2 0.000000 0.000000 0.988235 25.000000 petD gene petD petD 8007 8489 1 483 LSC 0.014838 12 1 153 28 no 0.500000 3 0.666667 0.014869 0.997930 44.000000 IGS_011 igs petD|atpA petD-atpA 8490 8586 0 97 LSC 0.015464 3 0 99 132 no 0.250000 2 0.500000 0.015464 1.000000 41.700000 atpA gene atpA atpA 8587 10122 -1 1536 LSC 0.011393 31 0 26 26 no 0.500000 3 0.666667 0.011393 1.000000 43.900000 IGS_012 igs atpA|atpD atpA-atpD 10123 10219 0 97 LSC 0.044674 7 0 2 33 no 0.500000 3 0.666667 0.044674 1.000000 57.400000 atpD gene atpD atpD 10220 10837 -1 618 LSC 0.008091 9 0 1 152 no 0.500000 3 0.666667 0.008091 1.000000 39.900000 IGS_013 igs atpD|atpF atpD-atpF 10838 10839 0 2 LSC 0.000000 0 0 74 150 no 0.000000 1 0.000000 NA 1.000000 24.300000 atpF gene atpF atpF 10840 11364 -1 525 LSC 0.006032 6 0 76 59 no 0.500000 3 0.666667 0.006032 1.000000 41.400000 IGS_014 igs atpF|atpG atpF-atpG 11365 11434 0 70 LSC 0.007143 1 1 152 81 no 0.500000 3 0.666667 0.007177 1.000000 40.900000 atpG gene atpG atpG 11435 11905 -1 471 LSC 0.006016 5 0 10 53 no 0.500000 3 0.666667 0.006016 1.000000 36.500000 IGS_015 igs atpG|atpH atpG-atpH 11906 12016 0 111 LSC 0.084084 15 0 167 300 yes 0.500000 3 0.666667 0.084084 1.000000 75.600000 atpH gene atpH atpH 12017 12265 -1 249 LSC 0.000000 0 0 6 64 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_016 igs atpH|atpI atpH-atpI 12266 12344 0 79 LSC 0.012658 2 0 255 24 no 0.250000 2 0.500000 0.012658 1.000000 34.100000 atpI gene atpI atpI 12345 13091 -1 747 LSC 0.010486 15 0 0 104 no 0.500000 3 0.666667 0.010486 1.000000 41.600000 IGS_017 igs atpI|tsf atpI-tsf 13092 13315 0 224 LSC 0.029762 12 0 135 39 no 0.500000 3 0.666667 0.029762 1.000000 51.100000 tsf gene tsf tsf 13316 13918 -1 603 LSC 0.025152 28 0 5 31 no 0.500000 3 0.666667 0.025152 1.000000 51.900000 IGS_018 igs tsf|rps2 tsf-rps2 13919 13971 0 53 LSC 0.018868 2 0 16 30 no 0.500000 3 0.666667 0.018868 1.000000 42.500000 rps2 gene rps2 rps2 13972 14667 -1 696 LSC 0.016523 22 0 4 37 no 0.500000 3 0.666667 0.016523 1.000000 46.100000 IGS_019 igs rps2|rpoC2 rps2-rpoC2 14668 14838 0 171 LSC 0.025341 8 0 71 12 no 0.500000 3 0.666667 0.025341 1.000000 46.300000 rpoC2 gene rpoC2 rpoC2 14839 18675 -1 3837 LSC 0.020024 140 0 5 145 no 0.500000 3 0.666667 0.020024 1.000000 43.900000 IGS_020 igs rpoC2|rpoC1 rpoC2-rpoC1 18676 18688 0 13 LSC 0.000000 0 0 29 132 no 0.000000 1 0.000000 NA 1.000000 20.900000 rpoC1 gene rpoC1 rpoC1 18689 20521 -1 1833 LSC 0.014821 47 0 42 68 no 0.500000 3 0.666667 0.014821 1.000000 46.700000 IGS_021 igs rpoC1|rpoB rpoC1-rpoB 20522 20577 0 56 LSC 0.000000 0 0 131 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 rpoB gene rpoB rpoB 20578 23976 -1 3399 LSC 0.018143 111 0 187 104 no 0.500000 3 0.666667 0.018143 1.000000 50.700000 IGS_022 igs rpoB|rps20 rpoB-rps20 23977 24050 0 74 LSC 0.000000 0 0 135 30 no 0.000000 1 0.000000 0.000000 1.000000 21.000000 rps20 gene rps20 rps20 24051 24356 -1 306 LSC 0.031590 18 0 209 42 no 0.500000 3 0.666667 0.031590 1.000000 53.000000 IGS_023 igs rps20|trnS1 rps20-trnS1 24357 24476 0 120 LSC 0.013889 3 0 10 91 no 0.500000 3 0.666667 0.013889 1.000000 38.300000 trnS1 tRNA trnS1 trnS1 24477 24564 -1 88 LSC 0.000000 0 0 8 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_024 igs trnS1|psaD trnS1-psaD 24565 24783 0 219 LSC 0.040335 17 0 96 72 no 0.500000 3 0.666667 0.040335 1.000000 61.400000 psaD gene psaD psaD 24784 25182 -1 399 LSC 0.011696 9 0 24 1 no 0.500000 3 0.666667 0.011696 1.000000 38.300000 IGS_025 igs psaD|trnM1 psaD-trnM1 25183 25235 0 53 LSC 0.009434 1 0 71 79 no 0.250000 2 0.500000 0.009434 1.000000 35.400000 trnM1 tRNA trnM1 trnM1 25236 25309 -1 74 LSC 0.000000 0 0 51 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_026 igs trnM1|trnP trnM1-trnP 25310 25356 0 47 LSC 0.021277 2 0 125 78 no 0.250000 2 0.500000 0.021277 1.000000 44.200000 trnP tRNA trnP trnP 25357 25430 -1 74 LSC 0.000000 0 0 16 4 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_027 igs trnP|chlB trnP-chlB 25431 25503 0 73 LSC 0.009132 1 0 90 72 no 0.000000 2 0.000000 0.009132 1.000000 30.000000 chlB gene chlB chlB 25504 27036 -1 1533 LSC 0.013046 36 0 68 64 no 0.500000 3 0.666667 0.013046 1.000000 47.900000 IGS_028 igs chlB|trnY chlB-trnY 27037 27248 0 212 LSC 0.014937 6 0 95 105 no 0.500000 3 0.666667 0.014937 1.000000 45.500000 trnY tRNA trnY trnY 27249 27329 1 81 LSC 0.000000 0 0 73 24 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_029 igs trnY|LJCPDNA_020 trnY-LJCPDNA_020 27330 27391 0 62 LSC 0.056452 6 0 154 111 yes 0.500000 3 0.666667 0.056452 1.000000 71.000000 LJCPDNA_020 gene LJCPDNA_020 LJCPDNA_020 27392 28087 -1 696 LSC 0.010776 14 0 2 18 no 0.500000 3 0.666667 0.010776 1.000000 41.900000 IGS_030 igs LJCPDNA_020|ccs1 LJCPDNA_020-ccs1 28088 28209 0 122 LSC 0.012295 3 0 54 15 no 0.500000 3 0.666667 0.012295 1.000000 37.900000 ccs1 gene ccs1 ccs1 28210 29496 -1 1287 LSC 0.020591 48 0 47 48 no 0.500000 3 0.666667 0.020591 1.000000 51.800000 IGS_031 igs ccs1|ycf46 ccs1-ycf46 29497 29548 0 52 LSC 0.012821 1 0 57 3 no 0.000000 2 0.000000 0.012821 1.000000 27.100000 ycf46 gene ycf46 ycf46 29549 31024 -1 1476 LSC 0.017841 48 0 3 62 no 0.500000 3 0.666667 0.017841 1.000000 46.700000 IGS_032 igs ycf46|rpl34 ycf46-rpl34 31025 31073 0 49 LSC 0.000000 0 0 125 13 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 rpl34 gene rpl34 rpl34 31074 31211 -1 138 LSC 0.014493 4 0 174 184 no 0.500000 3 0.666667 0.014493 1.000000 51.300000 IGS_033 igs rpl34|secA rpl34-secA 31212 31296 0 85 LSC 0.000000 0 0 39 99 no 0.000000 1 0.000000 0.000000 1.000000 21.700000 secA gene secA secA 31297 33930 -1 2634 LSC 0.017970 85 0 124 41 no 0.500000 3 0.666667 0.017970 1.000000 47.200000 IGS_034 igs secA|thiG secA-thiG 33931 34752 0 822 LSC 0.032847 49 1 17 2 no 0.500000 3 0.666667 0.032876 1.000000 56.900000 thiG gene thiG thiG 34753 35571 -1 819 LSC 0.017501 27 0 7 10 no 0.500000 3 0.666667 0.017501 1.000000 46.900000 IGS_035 igs thiG|trnG1 thiG-trnG1 35572 35698 0 127 LSC 0.040682 10 0 11 82 no 0.500000 3 0.666667 0.040682 1.000000 57.100000 trnG1 tRNA trnG1 trnG1 35699 35770 -1 72 LSC 0.000000 0 0 8 10 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_036 igs trnG1|psbI trnG1-psbI 35771 35921 0 151 LSC 0.065121 19 0 80 33 yes 0.500000 3 0.666667 0.065121 1.000000 65.600000 psbI gene psbI psbI 35922 36047 -1 126 LSC 0.011905 3 0 2 77 no 0.500000 3 0.666667 0.011905 1.000000 36.600000 IGS_037 igs psbI|dnaK psbI-dnaK 36048 36142 0 95 LSC 0.010526 2 0 50 52 no 0.500000 3 0.666667 0.010526 1.000000 39.200000 dnaK gene dnaK dnaK 36143 38035 -1 1893 LSC 0.018577 62 0 5 22 no 0.500000 3 0.666667 0.018577 1.000000 46.400000 IGS_038 igs dnaK|trnS2 dnaK-trnS2 38036 38169 0 134 LSC 0.042289 10 0 26 193 no 0.500000 3 0.666667 0.042289 1.000000 58.400000 trnS2 tRNA trnS2 trnS2 38170 38259 -1 90 LSC 0.000000 0 0 13 103 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_039 igs trnS2|trnM2 trnS2-trnM2 38260 38266 0 7 LSC 0.000000 0 0 103 96 no 0.000000 1 0.000000 NA 1.000000 25.900000 trnM2 tRNA trnM2 trnM2 38267 38339 -1 73 LSC 0.000000 0 0 110 23 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 IGS_040 igs trnM2|trnD trnM2-trnD 38340 38497 0 158 LSC 0.033755 9 1 183 89 no 0.500000 3 0.666667 0.031767 1.000000 57.900000 trnD tRNA trnD trnD 38498 38572 1 75 LSC 0.000000 0 0 27 14 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_041 igs trnD|groEL trnD-groEL 38573 38587 0 15 LSC 0.044444 1 0 102 13 no 0.000000 2 0.000000 NA 1.000000 48.100000 groEL gene groEL groEL 38588 40132 -1 1545 LSC 0.019741 54 0 0 0 no 0.500000 3 0.666667 0.019741 1.000000 47.500000 IGS_042 igs groEL|petJ groEL-petJ 40133 40308 0 176 LSC 0.030303 10 0 32 65 no 0.500000 3 0.666667 0.030303 1.000000 51.300000 petJ gene petJ petJ 40309 40647 -1 339 LSC 0.017207 10 0 8 158 no 0.500000 3 0.666667 0.017207 1.000000 41.000000 IGS_043 igs petJ|psbV petJ-psbV 40648 40751 0 104 LSC 0.000000 0 0 78 54 no 0.000000 1 0.000000 0.000000 1.000000 22.800000 psbV gene psbV psbV 40752 41237 -1 486 LSC 0.011317 11 0 182 106 no 0.500000 3 0.666667 0.011317 1.000000 47.900000 IGS_044 igs psbV|ycf66 psbV-ycf66 41238 41301 0 64 LSC 0.000000 0 0 12 42 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 ycf66 gene ycf66 ycf66 41302 41625 -1 324 LSC 0.011831 7 0 76 77 no 0.500000 3 0.666667 0.011831 1.000000 42.300000 IGS_045 igs ycf66|psbX ycf66-psbX 41626 41757 0 132 LSC 0.003788 1 0 26 75 no 0.250000 2 0.500000 0.003788 1.000000 28.000000 psbX gene psbX psbX 41758 41889 -1 132 LSC 0.003788 1 0 54 80 no 0.250000 2 0.500000 0.003788 1.000000 30.100000 IGS_046 igs psbX|rpl27 psbX-rpl27 41890 42296 0 407 LSC 0.039722 28 0 56 25 no 0.500000 3 0.666667 0.039722 1.000000 58.700000 rpl27 gene rpl27 rpl27 42297 42551 -1 255 LSC 0.024183 11 0 13 4 no 0.500000 3 0.666667 0.024183 1.000000 44.700000 IGS_047 igs rpl27|rpl19 rpl27-rpl19 42552 42978 0 427 LSC 0.026542 20 0 59 33 no 0.500000 3 0.666667 0.026542 1.000000 51.000000 rpl19 gene rpl19 rpl19 42979 43365 1 387 LSC 0.015935 11 0 57 96 no 0.500000 3 0.666667 0.015935 1.000000 44.900000 IGS_048 igs rpl19|trnM3 rpl19-trnM3 43366 43367 0 2 LSC 0.000000 0 0 39 94 no 0.000000 1 0.000000 NA 1.000000 21.700000 trnM3 tRNA trnM3 trnM3 43368 43453 -1 86 LSC 0.000000 0 0 41 8 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_049 igs trnM3|ycf47 trnM3-ycf47 43454 43997 0 544 LSC 0.009804 9 7 127 27 no 0.500000 3 0.666667 0.009932 0.987132 43.000000 ycf47 gene ycf47 ycf47 43998 44228 -1 231 LSC 0.009380 4 0 19 229 no 0.500000 3 0.666667 0.009380 1.000000 35.900000 IGS_050 igs ycf47|petM ycf47-petM 44229 44307 0 79 LSC 0.000000 0 0 113 150 no 0.000000 1 0.000000 0.000000 1.000000 27.200000 petM gene petM petM 44308 44406 -1 99 LSC 0.000000 0 0 192 51 no 0.000000 1 0.000000 0.000000 1.000000 22.600000 IGS_051 igs petM|petN petM-petN 44407 44442 0 36 LSC 0.000000 0 0 291 15 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 petN gene petN petN 44443 44532 -1 90 LSC 0.005556 1 0 300 88 no 0.250000 2 0.500000 0.005556 1.000000 33.900000 IGS_052 igs petN|acsF petN-acsF 44533 44935 0 403 LSC 0.024814 18 0 74 20 no 0.500000 3 0.666667 0.024814 1.000000 48.500000 acsF gene acsF acsF 44936 46036 1 1101 LSC 0.012413 26 0 31 2 no 0.500000 3 0.666667 0.012413 1.000000 43.100000 IGS_053 igs acsF|ycf42 acsF-ycf42 46037 46160 0 124 LSC 0.057796 13 0 3 35 no 0.500000 3 0.666667 0.057796 1.000000 63.300000 ycf42 gene ycf42 ycf42 46161 46721 1 561 LSC 0.015152 16 0 10 15 no 0.500000 3 0.666667 0.015152 1.000000 44.700000 IGS_054 igs ycf42|rpl35 ycf42-rpl35 46722 46822 0 101 LSC 0.021452 4 0 7 50 no 0.500000 3 0.666667 0.021452 1.000000 43.300000 rpl35 gene rpl35 rpl35 46823 47017 1 195 LSC 0.013675 5 0 31 65 no 0.500000 3 0.666667 0.013675 1.000000 39.800000 IGS_055 igs rpl35|rpl20 rpl35-rpl20 47018 47038 0 21 LSC 0.000000 0 0 42 44 no 0.000000 1 0.000000 0.000000 1.000000 21.900000 rpl20 gene rpl20 rpl20 47039 47383 1 345 LSC 0.012077 8 0 63 19 no 0.500000 3 0.666667 0.012077 1.000000 38.800000 IGS_056 igs rpl20|ilvH rpl20-ilvH 47384 47469 0 86 LSC 0.065891 10 0 48 50 yes 0.500000 3 0.666667 0.065891 1.000000 66.700000 ilvH gene ilvH ilvH 47470 48072 1 603 LSC 0.029298 31 0 14 9 yes 0.500000 3 0.666667 0.029298 1.000000 54.700000 IGS_057 igs ilvH|ycf34 ilvH-ycf34 48073 48275 0 203 LSC 0.046798 18 1 3 36 no 0.500000 3 0.666667 0.046908 1.000000 61.100000 ycf34 gene ycf34 ycf34 48276 48560 -1 285 LSC 0.033918 18 0 2 15 no 0.500000 3 0.666667 0.033918 1.000000 51.400000 IGS_058 igs ycf34|trnL1 ycf34-trnL1 48561 48609 0 49 LSC 0.030612 3 0 27 72 no 0.250000 2 0.500000 0.030612 1.000000 46.900000 trnL1_part2 tRNA trnL1 trnL1 48610 48662 -1 53 LSC 0.000000 0 0 3 19 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 trnL1_part1 tRNA trnL1 trnL1 48893 48925 -1 33 LSC 0.000000 0 0 34 13 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_061 igs trnL1|trnC trnL1-trnC 48926 49013 0 88 LSC 0.056818 8 1 67 73 yes 0.500000 3 0.666667 0.057166 1.000000 68.300000 trnC tRNA trnC trnC 49014 49084 -1 71 LSC 0.000000 0 0 4 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_062 igs trnC|rbcL trnC-rbcL 49085 49349 0 265 LSC 0.041509 21 0 75 3 no 0.500000 3 0.666667 0.041509 1.000000 56.900000 rbcL gene rbcL rbcL 49350 50816 1 1467 LSC 0.008862 24 0 1 31 no 0.500000 3 0.666667 0.008862 1.000000 40.500000 IGS_063 igs rbcL|rbcS rbcL-rbcS 50817 51085 0 269 LSC 0.026642 13 0 3 43 no 0.500000 3 0.666667 0.026642 1.000000 46.400000 rbcS gene rbcS rbcS 51086 51505 1 420 LSC 0.009524 8 0 13 11 no 0.500000 3 0.666667 0.009524 1.000000 38.100000 IGS_064 igs rbcS|trnR1 rbcS-trnR1 51506 51869 0 364 LSC 0.035714 24 0 26 104 no 0.500000 3 0.666667 0.035714 1.000000 55.700000 trnR1 tRNA trnR1 trnR1 51870 51942 1 73 LSC 0.000000 0 0 0 31 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_065 igs trnR1|trnE trnR1-trnE 51943 51998 0 56 LSC 0.017857 2 0 73 73 no 0.250000 2 0.500000 0.017857 1.000000 41.400000 trnE tRNA trnE trnE 51999 52071 1 73 LSC 0.000000 0 0 6 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_066 igs trnE|psaA trnE-psaA 52072 52312 0 241 LSC 0.025588 11 7 79 89 no 0.500000 3 0.666667 0.024681 1.000000 54.700000 psaA gene psaA psaA 52313 54562 1 2250 LSC 0.010148 41 0 128 245 no 0.500000 3 0.666667 0.010148 1.000000 49.300000 IGS_067 igs psaA|psaB psaA-psaB 54563 54583 0 21 LSC 0.000000 0 0 42 224 no 0.000000 1 0.000000 0.000000 1.000000 21.900000 psaB gene psaB psaB 54584 56788 1 2205 LSC 0.009977 40 0 63 39 no 0.500000 3 0.666667 0.009977 1.000000 42.600000 IGS_068 igs psaB|rps14 psaB-rps14 56789 56888 0 100 LSC 0.035000 7 0 3 74 no 0.250000 2 0.500000 0.035000 1.000000 48.200000 rps14 gene rps14 rps14 56889 57191 1 303 LSC 0.003300 2 0 14 6 no 0.250000 2 0.500000 0.003300 1.000000 26.300000 IGS_069 igs rps14|petG rps14-petG 57192 57238 0 47 LSC 0.010638 1 0 66 66 no 0.250000 2 0.500000 0.010638 1.000000 35.800000 petG gene petG petG 57239 57352 -1 114 LSC 0.008772 2 0 40 8 no 0.250000 2 0.500000 0.008772 1.000000 30.200000 IGS_070 igs petG|psbK petG-psbK 57353 57484 0 132 LSC 0.016414 4 0 30 247 no 0.500000 3 0.666667 0.016414 1.000000 41.500000 psbK gene psbK psbK 57485 57619 -1 135 LSC 0.000000 0 0 66 112 no 0.000000 1 0.000000 0.000000 1.000000 23.700000 IGS_071 igs psbK|ccsA psbK-ccsA 57620 57951 0 332 LSC 0.037149 22 60 201 3 no 0.500000 3 0.666667 0.036115 1.000000 58.900000 ccsA gene ccsA ccsA 57952 58938 -1 987 LSC 0.017562 32 0 16 34 no 0.500000 3 0.666667 0.017562 1.000000 47.500000 IGS_072 igs ccsA|chlL ccsA-chlL 58939 59370 0 432 LSC 0.014275 12 1 19 44 no 0.500000 3 0.666667 0.014301 1.000000 42.500000 chlL gene chlL chlL 59371 60255 1 885 LSC 0.012994 21 0 88 68 no 0.500000 3 0.666667 0.012994 1.000000 48.300000 IGS_073 igs chlL|chlN chlL-chlN 60256 60305 0 50 LSC 0.000000 0 0 68 18 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 chlN gene chlN chlN 60306 61664 1 1359 LSC 0.017169 43 0 118 0 no 0.500000 3 0.666667 0.017169 1.000000 46.100000 IGS_074 igs chlN|psaF chlN-psaF 61665 61776 0 112 LSC 0.034226 7 9 6 96 no 0.500000 3 0.666667 0.036805 0.982143 57.000000 psaF gene psaF psaF 61777 62385 1 609 LSC 0.013410 15 0 14 18 no 0.500000 3 0.666667 0.013410 1.000000 44.500000 IGS_075 igs psaF|psaJ psaF-psaJ 62386 62448 0 63 LSC 0.007937 1 0 126 71 no 0.250000 2 0.500000 0.007937 1.000000 34.300000 psaJ gene psaJ psaJ 62449 62577 1 129 LSC 0.003876 1 0 44 14 no 0.250000 2 0.500000 0.003876 1.000000 27.200000 IGS_076 igs psaJ|LJCPDNA_056 psaJ-LJCPDNA_056 62578 62749 0 172 LSC 0.031977 10 5 57 104 no 0.500000 3 0.666667 0.032934 0.970930 56.900000 LJCPDNA_056 gene LJCPDNA_056 LJCPDNA_056 62750 64327 1 1578 LSC 0.021018 61 0 8 1 no 0.500000 3 0.666667 0.021018 1.000000 48.600000 IGS_077 igs LJCPDNA_056|petA LJCPDNA_056-petA 64328 64415 0 88 LSC 0.035985 6 0 60 90 no 0.500000 3 0.666667 0.035985 1.000000 57.300000 petA gene petA petA 64416 65363 -1 948 LSC 0.012658 21 0 13 45 no 0.500000 3 0.666667 0.012658 1.000000 43.800000 IGS_078 igs petA|tatC petA-tatC 65364 65474 0 111 LSC 0.012012 2 0 116 39 no 0.000000 2 0.000000 0.012012 1.000000 29.300000 tatC gene tatC tatC 65475 66257 -1 783 LSC 0.007237 10 0 58 1 no 0.500000 3 0.666667 0.007237 1.000000 39.300000 IGS_079 igs tatC|atpE tatC-atpE 66258 66285 0 28 LSC 0.035714 2 0 59 36 no 0.250000 2 0.500000 0.035714 1.000000 51.100000 atpE gene atpE atpE 66286 66690 -1 405 LSC 0.011934 8 0 22 60 no 0.500000 3 0.666667 0.011934 1.000000 39.800000 IGS_080 igs atpE|atpB atpE-atpB 66691 66705 0 15 LSC 0.000000 0 0 56 45 no 0.000000 1 0.000000 NA 1.000000 22.100000 atpB gene atpB atpB 66706 68151 -1 1446 LSC 0.012563 32 0 71 85 no 0.500000 3 0.666667 0.012563 1.000000 48.100000 IGS_081 igs atpB|ycf3 atpB-ycf3 68152 68346 0 195 LSC 0.035043 13 6 4 60 no 0.500000 3 0.666667 0.034012 1.000000 56.100000 ycf3 gene ycf3 ycf3 68347 68856 -1 510 LSC 0.016013 15 0 3 1 no 0.500000 3 0.666667 0.016013 1.000000 43.500000 IGS_082 igs ycf3|rps18 ycf3-rps18 68857 68958 0 102 LSC 0.004902 1 0 47 12 no 0.250000 2 0.500000 0.004902 1.000000 27.800000 rps18 gene rps18 rps18 68959 69213 -1 255 LSC 0.015686 8 0 100 27 no 0.500000 3 0.666667 0.015686 1.000000 41.100000 IGS_083 igs rps18|rpl33 rps18-rpl33 69214 69223 0 10 LSC 0.000000 0 0 3 17 no 0.000000 1 0.000000 NA 1.000000 19.000000 rpl33 gene rpl33 rpl33 69224 69448 -1 225 LSC 0.014815 6 0 13 50 no 1.000000 4 1.000000 0.014815 1.000000 48.500000 IGS_084 igs rpl33|clpC rpl33-clpC 69449 69795 0 347 LSC 0.021134 13 1 59 20 no 0.500000 3 0.666667 0.020209 1.000000 45.100000 clpC gene clpC clpC 69796 72480 1 2685 LSC 0.015394 78 6 42 11 no 0.500000 3 0.666667 0.015411 1.000000 43.600000 IGS_085 igs clpC|trnK clpC-trnK 72481 72618 0 138 LSC 0.091787 23 0 6 79 yes 0.500000 3 0.666667 0.091787 1.000000 63.600000 trnK tRNA trnK trnK 72619 72690 -1 72 LSC 0.000000 0 0 2 7 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_086 igs trnK|psaC trnK-psaC 72691 72760 0 70 LSC 0.014286 2 0 74 45 no 0.250000 2 0.500000 0.014286 1.000000 36.800000 psaC gene psaC psaC 72761 73006 -1 246 LSC 0.004065 2 0 46 4 no 0.250000 2 0.500000 0.004065 1.000000 26.600000 IGS_087 igs psaC|psbA psaC-psbA 73007 73443 0 437 LSC 0.068650 51 0 11 140 yes 0.500000 3 0.666667 0.068650 1.000000 66.800000 psbA gene psbA psbA 73444 74529 1 1086 LSC 0.001535 3 0 80 163 no 0.500000 3 0.666667 0.001535 1.000000 41.400000 IGS_088 igs psbA|cbbx psbA-cbbx 74530 75283 0 754 LSC 0.054377 72 57 300 33 yes 0.500000 3 0.666667 0.056309 0.966844 76.300000 cbbx gene cbbx cbbx 75284 76186 -1 903 LSC 0.016427 28 0 4 2 no 0.500000 3 0.666667 0.016427 1.000000 45.800000 IGS_089 igs cbbx|ycf12 cbbx-ycf12 76187 76536 0 350 LSC 0.026667 18 0 29 147 no 0.500000 3 0.666667 0.026667 1.000000 49.800000 ycf12 gene ycf12 ycf12 76537 76632 1 96 LSC 0.000000 0 0 36 51 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 ftrB gene ftrB ftrB 76627 76974 -1 348 LSC 0.004789 3 0 126 18 no 0.500000 3 0.666667 0.004789 1.000000 33.700000 IGS_091 igs ftrB|psaI ftrB-psaI 76975 77048 0 74 LSC 0.006757 1 0 119 32 no 0.250000 2 0.500000 0.006757 1.000000 30.600000 psaI gene psaI psaI 77049 77159 1 111 LSC 0.009009 2 0 55 86 no 0.500000 3 0.666667 0.009009 1.000000 38.600000 IGS_092 igs psaI|psbJ psaI-psbJ 77160 77264 0 105 LSC 0.015873 3 0 38 48 no 0.500000 3 0.666667 0.015873 1.000000 41.700000 psbJ gene psbJ psbJ 77265 77384 -1 120 LSC 0.004167 1 0 9 144 no 0.250000 2 0.500000 0.004167 1.000000 27.000000 IGS_093 igs psbJ|psbL psbJ-psbL 77385 77459 0 75 LSC 0.000000 0 8 71 69 no 0.000000 2 0.000000 0.000000 0.893333 27.200000 psbL gene psbL psbL 77460 77576 -1 117 LSC 0.004274 1 0 146 65 no 0.250000 2 0.500000 0.004274 1.000000 31.300000 IGS_094 igs psbL|psbF psbL-psbF 77577 77587 0 11 LSC 0.000000 0 0 47 54 no 0.000000 1 0.000000 NA 1.000000 22.300000 psbF gene psbF psbF 77588 77719 -1 132 LSC 0.007576 2 0 58 4 no 0.500000 3 0.666667 0.007576 1.000000 33.700000 IGS_095 igs psbF|psbE psbF-psbE 77720 77747 0 28 LSC 0.017857 1 0 38 300 no 0.250000 2 0.500000 0.017857 1.000000 38.800000 psbE gene psbE psbE 77748 78002 -1 255 LSC 0.000000 0 0 23 95 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 IGS_096 igs psbE|trnG2 psbE-trnG2 78003 78149 0 147 LSC 0.028345 8 0 278 300 no 0.500000 3 0.666667 0.028345 1.000000 62.700000 trnG2 tRNA trnG2 trnG2 78150 78220 -1 71 LSC 0.000000 0 0 2 300 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_097 igs trnG2|ycf4 trnG2-ycf4 78221 78336 0 116 LSC 0.000000 0 0 73 300 no 0.000000 1 0.000000 0.000000 1.000000 24.200000 ycf4 gene ycf4 ycf4 78337 78897 -1 561 LSC 0.002971 3 0 189 89 no 0.500000 3 0.666667 0.002971 1.000000 42.200000 IGS_098 igs ycf4|psaL ycf4-psaL 78898 79275 0 378 LSC 0.006614 4 4 44 95 no 0.500000 3 0.666667 0.006656 1.000000 38.600000 psaL gene psaL psaL 79276 79713 1 438 LSC 0.016743 13 0 195 22 no 0.500000 3 0.666667 0.016743 1.000000 43.900000 IGS_099 igs psaL|rbcR psaL-rbcR 79714 79764 0 51 LSC 0.062092 5 0 41 36 yes 0.500000 3 0.666667 0.062092 1.000000 65.600000 rbcR gene rbcR rbcR 79765 80721 -1 957 LSC 0.024382 42 0 16 0 no 0.500000 3 0.666667 0.024382 1.000000 50.800000 IGS_100 igs rbcR|psbY rbcR-psbY 80722 81143 0 422 LSC 0.034360 27 3 60 186 no 0.500000 3 0.666667 0.034606 0.992891 59.300000 psbY gene psbY psbY 81144 81257 1 114 LSC 0.000000 0 0 94 72 no 0.000000 1 0.000000 0.000000 1.000000 24.100000 IGS_101 igs psbY|rpl32 psbY-rpl32 81258 81597 0 340 LSC 0.032843 20 8 208 143 yes 0.500000 3 0.666667 0.033509 0.985294 64.300000 rpl32 gene rpl32 rpl32 81598 81837 1 240 LSC 0.016667 7 0 46 66 no 0.500000 3 0.666667 0.016667 1.000000 42.700000 IGS_102 igs rpl32|trnL2 rpl32-trnL2 81838 81908 0 71 LSC 0.014085 2 0 6 0 no 0.500000 3 0.666667 0.014085 1.000000 38.000000 trnL2 tRNA trnL2 trnL2 81909 81990 1 82 LSC 0.006098 1 0 3 22 no 0.250000 2 0.500000 0.006098 1.000000 27.900000 IGS_103 igs trnL2|rns trnL2-rns 81991 82526 0 536 IRa 0.037002 33 71 81 300 yes 0.500000 3 0.666667 0.030418 0.970149 68.100000 rns rRNA rns rns 82527 84006 1 1480 IRa 0.001464 4 0 47 54 no 0.500000 3 0.666667 0.001464 1.000000 38.900000 IGS_104 igs rns|trnI rns-trnI 84007 84123 0 117 SSC 0.019943 4 1 300 300 no 0.500000 3 0.666667 0.020017 1.000000 57.400000 trnI tRNA trnI trnI 84124 84197 1 74 SSC 0.000000 0 0 14 300 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_105 igs trnI|trnA trnI-trnA 84198 84200 0 3 SSC 0.000000 0 0 88 300 no 0.000000 1 0.000000 NA 1.000000 25.400000 trnA tRNA trnA trnA 84201 84273 1 73 SSC 0.000000 0 0 91 300 no 0.000000 1 0.000000 0.000000 1.000000 25.600000 IGS_106 igs trnA|rnl trnA-rnl 84274 84330 0 57 SSC 0.000000 0 0 164 300 no 0.000000 1 0.000000 0.000000 1.000000 31.100000 rnl rRNA rnl rnl 84331 87276 1 2946 SSC 0.000962 5 1 221 154 no 0.500000 3 0.666667 0.000962 0.999661 43.600000 IGS_107 igs rnl|rrn5 rnl-rrn5 87277 87302 0 26 SSC 0.000000 0 0 300 128 no 0.000000 1 0.000000 0.000000 1.000000 28.300000 rrn5 rRNA rrn5 rrn5 87303 87402 1 100 SSC 0.000000 0 0 300 28 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_108 igs rrn5|rpl21 rrn5-rpl21 87403 87507 0 105 SSC 0.015873 3 0 300 23 no 0.500000 3 0.666667 0.015873 1.000000 40.600000 rpl21 gene rpl21 rpl21 87508 87819 1 312 SSC 0.009615 6 0 72 10 no 0.250000 2 0.500000 0.009615 1.000000 31.200000 IGS_109 igs rpl21|rpl3 rpl21-rpl3 87820 87948 0 129 SSC 0.012920 3 0 72 32 no 0.500000 3 0.666667 0.012920 1.000000 39.200000 rpl3 gene rpl3 rpl3 87949 88539 1 591 SSC 0.017484 19 0 12 58 no 0.500000 3 0.666667 0.017484 1.000000 47.000000 IGS_110 igs rpl3|rpl4 rpl3-rpl4 88540 88567 0 28 SSC 0.000000 0 0 24 30 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 rpl4 gene rpl4 rpl4 88568 89215 1 648 SSC 0.015175 18 0 52 300 no 0.500000 3 0.666667 0.015175 1.000000 48.600000 rpl23 gene rpl23 rpl23 89208 89510 1 303 SSC 0.000000 0 0 82 117 no 0.000000 1 0.000000 0.000000 1.000000 25.000000 IGS_112 igs rpl23|rpl2 rpl23-rpl2 89511 89550 0 40 SSC 0.000000 0 0 300 77 no 0.000000 1 0.000000 0.000000 1.000000 24.500000 rpl2 gene rpl2 rpl2 89551 90378 1 828 SSC 0.009863 15 0 300 109 no 0.500000 3 0.666667 0.009863 1.000000 49.300000 IGS_113 igs rpl2|rps19 rpl2-rps19 90379 90428 0 50 SSC 0.000000 0 0 9 59 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 rps19 gene rps19 rps19 90429 90713 1 285 SSC 0.013450 7 0 59 77 no 0.500000 3 0.666667 0.013450 1.000000 41.700000 IGS_114 igs rps19|rpl22 rps19-rpl22 90714 90728 0 15 SSC 0.000000 0 0 42 62 no 0.000000 1 0.000000 NA 1.000000 21.900000 rpl22 gene rpl22 rpl22 90729 91076 1 348 SSC 0.016284 10 0 57 118 no 0.500000 3 0.666667 0.016284 1.000000 44.300000 IGS_115 igs rpl22|rps3 rpl22-rps3 91077 91122 0 46 SSC 0.000000 0 0 9 72 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 rps3 gene rps3 rps3 91123 91791 1 669 SSC 0.012456 15 0 55 48 no 0.500000 3 0.666667 0.012456 1.000000 46.400000 IGS_116 igs rps3|rpl16 rps3-rpl16 91792 91813 0 22 SSC 0.000000 0 0 69 26 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 rpl16 gene rpl16 rpl16 91814 92218 1 405 SSC 0.014403 10 0 91 81 no 0.500000 3 0.666667 0.014403 1.000000 46.000000 IGS_117 igs rpl16|rpl29 rpl16-rpl29 92219 92237 0 19 SSC 0.000000 0 0 108 62 no 0.000000 1 0.000000 NA 1.000000 23.400000 rpl29 gene rpl29 rpl29 92238 92429 1 192 SSC 0.011285 4 0 127 35 no 0.500000 3 0.666667 0.011285 1.000000 38.400000 IGS_118 igs rpl29|rps17 rpl29-rps17 92430 92455 0 26 SSC 0.000000 0 0 45 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 rps17 gene rps17 rps17 92456 92710 1 255 SSC 0.003922 2 0 71 33 no 0.500000 3 0.666667 0.003922 1.000000 33.300000 IGS_119 igs rps17|rpl14 rps17-rpl14 92711 92726 0 16 SSC 0.000000 0 0 120 17 no 0.000000 1 0.000000 NA 1.000000 20.000000 rpl14 gene rpl14 rpl14 92727 93092 1 366 SSC 0.008652 6 0 136 8 no 0.500000 3 0.666667 0.008652 1.000000 36.000000 rpl24 gene rpl24 rpl24 93093 93344 1 252 SSC 0.018519 8 0 102 0 no 0.500000 3 0.666667 0.018519 1.000000 40.400000 IGS_121 igs rpl24|rpl5 rpl24-rpl5 93345 93350 0 6 SSC 0.083333 1 0 66 18 no 0.250000 2 0.500000 NA 1.000000 59.800000 rpl5 gene rpl5 rpl5 93351 93914 1 564 SSC 0.017139 19 0 5 231 no 0.500000 3 0.666667 0.017139 1.000000 45.900000 IGS_122 igs rpl5|rps8 rpl5-rps8 93915 93933 0 19 SSC 0.000000 0 0 75 212 no 0.000000 1 0.000000 NA 1.000000 24.400000 rps8 gene rps8 rps8 93934 94332 1 399 SSC 0.007937 6 0 94 76 no 0.500000 3 0.666667 0.007937 1.000000 41.300000 IGS_123 igs rps8|rpl6 rps8-rpl6 94333 94349 0 17 SSC 0.000000 0 0 93 59 no 0.000000 1 0.000000 NA 1.000000 23.200000 rpl6 gene rpl6 rpl6 94350 94886 1 537 SSC 0.011794 12 0 110 40 no 0.500000 3 0.666667 0.011794 1.000000 44.200000 IGS_124 igs rpl6|rpl18 rpl6-rpl18 94887 94892 0 6 SSC 0.000000 0 0 45 34 no 0.000000 1 0.000000 NA 1.000000 21.300000 rpl18 gene rpl18 rpl18 94893 95222 1 330 SSC 0.018687 11 0 51 127 no 0.500000 3 0.666667 0.018687 1.000000 45.200000 IGS_125 igs rpl18|rps5 rpl18-rps5 95223 95269 0 47 SSC 0.000000 0 0 18 80 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 rps5 gene rps5 rps5 95270 95773 1 504 SSC 0.016865 15 0 65 159 no 0.500000 3 0.666667 0.016865 1.000000 48.600000 IGS_126 igs rps5|secY rps5-secY 95774 95848 0 75 SSC 0.000000 0 0 23 84 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 secY gene secY secY 95849 97144 1 1296 SSC 0.013632 32 0 98 7 no 0.500000 3 0.666667 0.013632 1.000000 44.100000 IGS_127 igs secY|rpl36 secY-rpl36 97145 97209 0 65 SSC 0.043590 5 0 18 12 no 0.500000 3 0.666667 0.043590 1.000000 58.300000 rpl36 gene rpl36 rpl36 97210 97323 1 114 SSC 0.005848 1 0 13 3 no 0.000000 2 0.000000 0.005848 1.000000 22.700000 IGS_128 igs rpl36|rps13 rpl36-rps13 97324 97349 0 26 SSC 0.025641 1 0 101 32 no 0.000000 2 0.000000 0.025641 1.000000 37.500000 rps13 gene rps13 rps13 97350 97730 1 381 SSC 0.015748 11 0 22 72 no 0.500000 3 0.666667 0.015748 1.000000 42.200000 IGS_129 igs rps13|rps11 rps13-rps11 97731 97773 0 43 SSC 0.000000 0 0 41 29 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 rps11 gene rps11 rps11 97774 98145 1 372 SSC 0.012545 9 0 84 44 no 0.500000 3 0.666667 0.012545 1.000000 41.600000 IGS_130 igs rps11|rpoA rps11-rpoA 98146 98275 0 130 SSC 0.024359 6 0 69 101 no 0.500000 3 0.666667 0.024359 1.000000 50.000000 rpoA gene rpoA rpoA 98276 99427 1 1152 SSC 0.018229 38 0 15 101 no 0.500000 3 0.666667 0.018229 1.000000 47.800000 IGS_131 igs rpoA|rpl13 rpoA-rpl13 99428 99487 0 60 SSC 0.000000 0 0 27 41 no 0.000000 1 0.000000 0.000000 1.000000 20.800000 rpl13 gene rpl13 rpl13 99488 99919 1 432 SSC 0.010417 9 0 87 26 no 0.500000 3 0.666667 0.010417 1.000000 40.100000 IGS_132 igs rpl13|rps9 rpl13-rps9 99920 99931 0 12 SSC 0.000000 0 0 108 14 no 0.000000 1 0.000000 NA 1.000000 19.800000 rps9 gene rps9 rps9 99932 100360 1 429 SSC 0.008547 7 0 120 10 no 0.500000 3 0.666667 0.008547 1.000000 37.400000 IGS_133 igs rps9|rpl31 rps9-rpl31 100361 100405 0 45 SSC 0.014815 1 0 72 134 no 0.000000 2 0.000000 0.014815 1.000000 33.600000 rpl31 gene rpl31 rpl31 100406 100624 1 219 SSC 0.009893 4 0 34 6 no 0.500000 3 0.666667 0.009893 1.000000 35.300000 IGS_134 igs rpl31|rps12 rpl31-rps12 100625 100657 0 33 SSC 0.020202 1 0 45 38 no 0.000000 2 0.000000 0.020202 1.000000 34.500000 rps12 gene rps12 rps12 100658 101032 1 375 SSC 0.021778 15 0 26 2 no 0.500000 3 0.666667 0.021778 1.000000 44.600000 IGS_135 igs rps12|rps7 rps12-rps7 101033 101055 0 23 SSC 0.021739 1 0 27 44 no 0.250000 2 0.500000 0.021739 1.000000 40.700000 rps7 gene rps7 rps7 101056 101526 1 471 SSC 0.015216 13 0 20 19 no 0.500000 3 0.666667 0.015216 1.000000 43.400000 IGS_136 igs rps7|tufA rps7-tufA 101527 101602 0 76 SSC 0.032895 5 0 81 38 no 0.500000 3 0.666667 0.032895 1.000000 54.000000 tufA gene tufA tufA 101603 102835 1 1233 SSC 0.016221 36 0 14 170 no 0.500000 3 0.666667 0.016221 1.000000 46.400000 IGS_137 igs tufA|rps10 tufA-rps10 102836 102846 0 11 SSC 0.000000 0 0 69 159 no 0.000000 1 0.000000 NA 1.000000 23.900000 rps10 gene rps10 rps10 102847 103167 1 321 SSC 0.012461 8 0 80 21 no 0.500000 3 0.666667 0.012461 1.000000 38.900000 IGS_138 igs rps10|psaE rps10-psaE 103168 103233 0 66 SSC 0.030303 4 6 15 51 no 0.500000 3 0.666667 0.032323 1.000000 56.000000 psaE gene psaE psaE 103234 103419 -1 186 SSC 0.015233 5 0 11 13 no 0.500000 3 0.666667 0.015233 1.000000 39.200000 IGS_139 igs psaE|ftsH psaE-ftsH 103420 103576 0 157 SSC 0.013800 4 0 44 86 no 0.500000 3 0.666667 0.013800 1.000000 40.800000 ftsH gene ftsH ftsH 103577 105463 1 1887 SSC 0.011835 40 0 53 1 no 0.500000 3 0.666667 0.011835 1.000000 41.600000 IGS_140 igs ftsH|psbH ftsH-psbH 105464 105555 0 92 SSC 0.074275 12 5 72 239 yes 0.500000 3 0.666667 0.078544 0.945652 73.200000 psbH gene psbH psbH 105556 105759 -1 204 SSC 0.000000 0 0 7 35 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_141 igs psbH|psbN psbH-psbN 105760 105838 0 79 SSC 0.006329 1 0 211 50 no 0.250000 2 0.500000 0.006329 1.000000 31.600000 psbN gene psbN psbN 105839 105970 1 132 SSC 0.005051 1 0 43 57 no 0.000000 2 0.000000 0.005051 1.000000 25.200000 IGS_142 igs psbN|psbT psbN-psbT 105971 106055 0 85 SSC 0.017647 3 0 81 21 no 0.500000 3 0.666667 0.017647 1.000000 42.100000 psbT gene psbT psbT 106056 106181 -1 126 SSC 0.003968 1 0 8 164 no 0.250000 2 0.500000 0.003968 1.000000 26.800000 IGS_143 igs psbT|psbB psbT-psbB 106182 106213 0 32 SSC 0.000000 0 0 104 132 no 0.000000 1 0.000000 0.000000 1.000000 26.600000 psbB gene psbB psbB 106214 107746 -1 1533 SSC 0.007937 23 0 136 121 no 0.500000 3 0.666667 0.007937 1.000000 48.800000 IGS_144 igs psbB|petF psbB-petF 107747 107922 0 176 SSC 0.011364 4 0 41 18 no 0.250000 2 0.500000 0.011364 1.000000 32.700000 petF gene petF petF 107923 108219 1 297 SSC 0.051066 28 0 0 79 no 0.500000 3 0.666667 0.051066 1.000000 62.400000 IGS_145 igs petF|rpl12 petF-rpl12 108220 108351 0 132 SSC 0.008838 2 0 6 30 no 0.500000 3 0.666667 0.008838 1.000000 34.400000 rpl12 gene rpl12 rpl12 108352 108744 -1 393 SSC 0.016964 11 0 50 76 no 0.500000 3 0.666667 0.016964 1.000000 44.900000 IGS_146 igs rpl12|rpl1 rpl12-rpl1 108745 108802 0 58 SSC 0.000000 0 0 116 18 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 rpl1 gene rpl1 rpl1 108803 109495 -1 693 SSC 0.008899 12 0 174 156 no 0.500000 3 0.666667 0.008899 1.000000 52.200000 IGS_147 igs rpl1|rpl11 rpl1-rpl11 109496 109532 0 37 SSC 0.000000 0 0 104 119 no 0.000000 1 0.000000 0.000000 1.000000 26.600000 rpl11 gene rpl11 rpl11 109533 109958 -1 426 SSC 0.003521 3 0 141 6 no 0.500000 3 0.666667 0.003521 1.000000 33.700000 IGS_148 igs rpl11|trnW rpl11-trnW 109959 110068 0 110 SSC 0.040909 8 0 230 108 yes 0.500000 3 0.666667 0.040909 1.000000 63.700000 trnW tRNA trnW trnW 110069 110141 -1 73 SSC 0.000000 0 0 17 35 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_149 igs trnW|dnaB trnW-dnaB 110142 110310 0 169 SSC 0.024655 8 0 90 3 no 0.500000 3 0.666667 0.024655 1.000000 45.400000 dnaB gene dnaB dnaB 110311 111762 -1 1452 SSC 0.019743 52 0 0 17 no 0.500000 3 0.666667 0.019743 1.000000 47.700000 IGS_150 igs dnaB|rpl9 dnaB-rpl9 111763 112068 0 306 SSC 0.016340 9 0 128 33 no 0.500000 3 0.666667 0.016340 1.000000 41.800000 rpl9 gene rpl9 rpl9 112069 112536 -1 468 SSC 0.024929 21 0 35 79 no 0.500000 3 0.666667 0.024929 1.000000 51.100000 IGS_151 igs rpl9|psbW rpl9-psbW 112537 112775 0 239 SSC 0.002092 1 0 8 92 no 0.250000 2 0.500000 0.002110 1.000000 25.400000 psbW gene psbW psbW 112776 113120 1 345 SSC 0.018357 12 0 159 17 no 0.500000 3 0.666667 0.018357 1.000000 42.900000 IGS_152 igs psbW|syfB psbW-syfB 113121 113217 0 97 SSC 0.017182 3 0 36 68 no 0.500000 3 0.666667 0.017182 1.000000 42.400000 syfB gene syfB syfB 113218 115521 1 2304 SSC 0.022786 97 0 52 36 no 0.500000 3 0.666667 0.022786 1.000000 50.900000 IGS_153 igs syfB|rps1 syfB-rps1 115522 115569 0 48 SSC 0.020833 2 0 11 3 no 0.500000 3 0.666667 0.020833 1.000000 42.900000 rps1 gene rps1 rps1 115570 116367 1 798 SSC 0.017753 27 0 8 7 no 0.500000 3 0.666667 0.017753 1.000000 47.100000 IGS_154 igs rps1|ycf40 rps1-ycf40 116368 116371 0 4 SSC 0.000000 0 0 1 3 no 0.000000 1 0.000000 NA 1.000000 18.800000 ycf40 gene ycf40 ycf40 116372 116599 -1 228 SSC 0.041667 17 0 5 137 no 0.500000 3 0.666667 0.041667 1.000000 56.600000 IGS_155 igs ycf40|trnH ycf40-trnH 116600 116649 0 50 SSC 0.000000 0 0 11 87 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 trnH tRNA trnH trnH 116650 116722 1 73 SSC 0.000000 0 0 61 14 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_156 igs trnH|trnT trnH-trnT 116723 116803 0 81 SSC 0.024691 3 0 134 76 no 0.000000 2 0.000000 0.024691 1.000000 40.200000 trnT tRNA trnT trnT 116804 116876 1 73 SSC 0.000000 0 0 15 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_157 igs trnT|trnV trnT-trnV 116877 117159 0 283 SSC 0.102473 51 47 88 79 yes 0.500000 3 0.666667 0.109012 1.000000 74.000000 trnV tRNA trnV trnV 117160 117231 1 72 SSC 0.000000 0 0 12 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_158 igs trnV|trnR2 trnV-trnR2 117232 117253 0 22 SSC 0.022727 1 0 84 72 no 0.250000 2 0.500000 0.022727 1.000000 44.700000 trnR2 tRNA trnR2 trnR2 117254 117326 1 73 SSC 0.006849 1 0 14 4 no 0.250000 2 0.500000 0.006849 1.000000 28.500000 IGS_159 igs trnR2|ycf35 trnR2-ycf35 117327 117461 0 135 SSC 0.027160 7 0 0 122 no 0.500000 3 0.666667 0.027160 1.000000 46.800000 ycf35 gene ycf35 ycf35 117462 117866 1 405 SSC 0.019342 14 0 46 13 no 0.500000 3 0.666667 0.019342 1.000000 44.300000 IGS_160 igs ycf35|ycf24 ycf35-ycf24 117867 118093 0 227 SSC 0.040382 16 0 18 8 no 0.500000 3 0.666667 0.040382 1.000000 55.700000 ycf24 gene ycf24 ycf24 118094 119539 1 1446 SSC 0.017750 46 0 90 0 no 0.500000 3 0.666667 0.017750 1.000000 46.300000 ycf16 gene ycf16 ycf16 119536 120312 1 777 SSC 0.024239 35 0 97 22 yes 0.500000 3 0.666667 0.024239 1.000000 52.600000 IGS_162 igs ycf16|trnN ycf16-trnN 120313 120562 0 250 SSC 0.062000 28 0 4 120 no 0.500000 3 0.666667 0.062000 1.000000 63.400000 trnN tRNA trnN trnN 120563 120634 1 72 SSC 0.000000 0 0 3 48 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_163 igs trnN|psbD trnN-psbD 120635 120878 0 244 SSC 0.018443 8 0 75 98 no 0.500000 3 0.666667 0.018443 1.000000 46.100000 psbD gene psbD psbD 120879 121934 1 1056 SSC 0.008996 17 0 132 69 no 0.500000 3 0.666667 0.008996 1.000000 45.600000 psbC gene psbC psbC 121882 123306 1 1425 SSC 0.007719 20 0 76 1 yes 0.500000 3 0.666667 0.007719 1.000000 39.700000 IGS_165 igs psbC|ycf41 psbC-ycf41 123307 123431 0 125 SSC 0.049333 10 0 24 0 no 0.500000 3 0.666667 0.049333 1.000000 60.300000 ycf41 gene ycf41 ycf41 123432 123731 -1 300 SSC 0.040000 20 0 0 28 no 0.500000 3 0.666667 0.040000 1.000000 54.500000 IGS_166 igs ycf41|ycf39 ycf41-ycf39 123732 123741 0 10 SSC 0.000000 0 0 64 18 no 0.000000 1 0.000000 NA 1.000000 20.100000 ycf39 gene ycf39 ycf39 123742 124701 -1 960 SSC 0.012674 23 0 74 45 no 0.500000 3 0.666667 0.012674 1.000000 46.400000 IGS_167 igs ycf39|ycf33 ycf39-ycf33 124702 125065 0 364 SSC 0.032967 22 1 38 59 no 0.500000 3 0.666667 0.033023 1.000000 55.000000 ycf33 gene ycf33 ycf33 125066 125260 1 195 SSC 0.005983 2 0 4 57 no 0.500000 3 0.666667 0.005983 1.000000 32.400000 IGS_168 igs ycf33|ilvB ycf33-ilvB 125261 125309 0 49 SSC 0.000000 0 0 67 8 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 ilvB gene ilvB ilvB 125310 127478 1 2169 SSC 0.018595 75 0 116 21 no 0.500000 3 0.666667 0.018595 1.000000 47.200000 IGS_169 igs ilvB|rps4 ilvB-rps4 127479 127547 0 69 SSC 0.045894 6 0 74 3 no 0.500000 3 0.666667 0.045894 1.000000 59.900000 rps4 gene rps4 rps4 127548 128180 -1 633 SSC 0.023170 26 0 6 68 no 0.500000 3 0.666667 0.023170 1.000000 50.400000 IGS_170 igs rps4|trnR3 rps4-trnR3 128181 128306 0 126 SSC 0.013228 3 0 17 90 no 0.500000 3 0.666667 0.013228 1.000000 38.300000 trnR3 tRNA trnR3 trnR3 128307 128380 1 74 SSC 0.000000 0 0 21 16 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_171 igs trnR3|trnQ trnR3-trnQ 128381 128413 0 33 SSC 0.040404 2 0 95 75 no 0.000000 2 0.000000 0.040404 1.000000 50.100000 trnQ tRNA trnQ trnQ 128414 128485 1 72 SSC 0.000000 0 0 11 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_172 igs trnQ|ycf65 trnQ-ycf65 128486 129017 0 532 SSC 0.048559 47 6 83 0 yes 0.500000 3 0.666667 0.048956 1.000000 67.200000 ycf65 gene ycf65 ycf65 129018 129338 -1 321 SSC 0.015576 10 0 58 30 no 0.500000 3 0.666667 0.015576 1.000000 41.700000 IGS_173 igs ycf65|rps16 ycf65-rps16 129339 129371 0 33 SSC 0.035354 2 0 77 6 no 0.500000 3 0.666667 0.035354 1.000000 52.100000 rps16 gene rps16 rps16 129372 129605 -1 234 SSC 0.023504 10 0 0 12 no 0.500000 3 0.666667 0.023504 1.000000 44.000000 IGS_174 igs rps16|ycf19 rps16-ycf19 129606 129646 0 41 SSC 0.016260 1 0 12 9 no 0.000000 2 0.000000 0.016260 1.000000 29.800000 ycf19 gene ycf19 ycf19 129647 130006 -1 360 SSC 0.007870 5 0 28 128 no 0.500000 3 0.666667 0.007870 1.000000 36.800000 IGS_175 igs ycf19|ycf17 ycf19-ycf17 130007 130235 0 229 SSC 0.002183 1 0 96 18 no 0.250000 2 0.500000 0.002183 1.000000 26.300000 ycf17 gene ycf17 ycf17 130236 130406 1 171 SSC 0.014620 5 4 100 154 no 0.250000 2 0.500000 0.014970 1.000000 43.900000 IGS_176 igs ycf17|rrn5 ycf17-rrn5 130407 130584 0 178 SSC 0.009363 3791 704 13 300 no 1.000000 4 1.000000 0.015940 0.999304 61.400000