Hotspot

ycf2-trnL-CAA

IRb · 96321-97269 · 949 bp

Back to Rodgersia

Pi 0.00105
MarkerSeek score 59.40
Primer available yes
Label ycf2-trnL-CAA

Feature Metadata

label_name
ycf2-trnL-CAA
feature_type
igs
region
IRb
length_bp
949
variable_sites
1
pi
0.00105
unique_haplotype_count
2
primer_available
yes
alignment_reliability
1.00
markerseek_score
59.40

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID fwd_seq rev_seq fwd_gc rev_gc fwd_tm rev_tm amplicon_size cross_species_success_rate primer_score
ycf2-trnL-CAA_p1 ATGGCTTTTCCCGGATGAAA AAATGGTAGACACGCGAGAC 45.0 50.0 57.8 58.0 1058 bp 1.0 78.2
ycf2-trnL-CAA_p2 TGGCTTTTCCCGGATGAAAT AAATGGTAGACACGCGAGAC 45.0 50.0 57.8 58.0 1057 bp 1.0 78.2
ycf2-trnL-CAA_p3 ATGGCTTTTCCCGGATGAAA TGAAATGGTAGACACGCGAG 45.0 50.0 57.8 58.0 1060 bp 1.0 78.2
ycf2-trnL-CAA_p4 TGGCTTTTCCCGGATGAAAT TGAAATGGTAGACACGCGAG 45.0 50.0 57.8 58.0 1059 bp 1.0 78.2
ycf2-trnL-CAA_p5 AAGATGGCTTTTCCCGGATG AAATGGTAGACACGCGAGAC 50.0 50.0 58.2 58.0 1061 bp 1.0 78.2