feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 4 76 -1 73 LSC 0.000000 0 0 92 200 no 0.000000 1 0.000000 0.000000 1.000000 25.700000 IGS_001 igs trnH|psbA trnH-psbA 77 351 0 275 LSC 0.014545 6 0 165 216 yes 1.000000 3 1.000000 0.014545 1.000000 59.100000 psbA gene psbA psbA 352 1413 -1 1062 LSC 0.001255 2 0 15 178 no 1.000000 3 1.000000 0.001255 1.000000 45.700000 IGS_002 igs psbA|trnK psbA-trnK 1414 1681 0 268 LSC 0.004975 2 0 300 179 no 0.333333 2 0.500000 0.004975 1.000000 41.600000 trnK_part2 tRNA trnK trnK 1682 1716 -1 35 LSC 0.000000 0 0 69 144 no 0.000000 1 0.000000 0.000000 1.000000 23.900000 matK gene matK matK 2021 3535 -1 1515 LSC 0.002640 6 0 92 113 no 0.333333 2 0.500000 0.002640 1.000000 39.800000 IGS_005 igs matK|trnK matK-trnK 3536 4280 0 745 LSC 0.002685 3 0 300 85 no 0.333333 2 0.500000 0.002685 1.000000 39.300000 trnK_part1 tRNA trnK trnK 4281 4317 -1 37 LSC 0.000000 0 0 300 48 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_006 igs trnK|rps16 trnK-rps16 4318 5049 0 732 LSC 0.004554 5 0 300 300 yes 1.000000 3 1.000000 0.004554 1.000000 61.700000 rps16 gene rps16 rps16 5050 6181 -1 1132 LSC 0.001767 3 1 12 9 yes 0.333333 2 0.500000 0.001768 1.000000 33.200000 IGS_007 igs rps16|trnQ rps16-trnQ 6182 6551 0 370 LSC 0.005405 3 0 300 56 no 0.333333 2 0.500000 0.005405 1.000000 34.100000 trnQ tRNA trnQ trnQ 6552 6623 -1 72 LSC 0.009259 1 0 19 300 no 0.333333 2 0.500000 0.009259 1.000000 32.300000 IGS_008 igs trnQ|psbK trnQ-psbK 6624 6963 0 340 LSC 0.000000 0 0 15 300 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 psbK gene psbK psbK 6964 7149 1 186 LSC 0.000000 0 0 300 200 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_009 igs psbK|psbI psbK-psbI 7150 7574 0 425 LSC 0.003137 2 5 300 300 no 0.333333 2 0.500000 0.003175 1.000000 46.000000 psbI gene psbI psbI 7575 7685 1 111 LSC 0.000000 0 0 97 300 no 0.000000 1 0.000000 0.000000 1.000000 26.000000 IGS_010 igs psbI|trnS psbI-trnS 7686 7780 0 95 LSC 0.000000 0 0 208 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnS tRNA trnS trnS 7781 7868 1 88 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_011 igs trnS|trnG trnS-trnG 7869 8544 0 676 LSC 0.001972 2 1 300 300 no 0.333333 2 0.500000 0.001975 1.000000 47.700000 trnG_part1 tRNA trnG trnG 8545 8567 1 23 LSC 0.000000 0 0 289 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnG_part2 tRNA trnG trnG 9292 9340 1 49 LSC 0.000000 0 0 105 278 no 0.000000 1 0.000000 0.000000 1.000000 26.600000 IGS_014 igs trnG|trnR trnG-trnR 9341 9487 0 147 LSC 0.000000 0 0 154 131 no 0.000000 1 0.000000 0.000000 1.000000 28.600000 trnR tRNA trnR trnR 9488 9559 1 72 LSC 0.000000 0 0 300 59 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 IGS_015 igs trnR|atpA trnR-atpA 9560 9856 0 297 LSC 0.006734 3 6 300 300 yes 1.000000 3 1.000000 0.006850 1.000000 59.100000 atpA gene atpA atpA 9857 11380 -1 1524 LSC 0.001312 3 0 147 300 yes 1.000000 3 1.000000 0.001312 1.000000 55.600000 IGS_016 igs atpA|atpF atpA-atpF 11381 11445 0 65 LSC 0.000000 0 0 236 274 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 atpF gene atpF atpF 11446 12727 -1 1282 LSC 0.002600 5 0 300 300 no 0.333333 2 0.500000 0.002600 1.000000 47.900000 IGS_017 igs atpF|atpH atpF-atpH 12728 13200 0 473 LSC 0.000000 0 0 11 300 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 atpH gene atpH atpH 13201 13446 -1 246 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_018 igs atpH|atpI atpH-atpI 13447 13931 0 485 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.600000 atpI gene atpI atpI 13932 14681 -1 750 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_019 igs atpI|rps2 atpI-rps2 14682 14923 0 242 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps2 gene rps2 rps2 14924 15634 -1 711 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 15635 15875 0 241 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpoC2 gene rpoC2 rpoC2 15876 19967 -1 4092 LSC 0.001466 9 0 300 300 yes 1.000000 3 1.000000 0.001466 1.000000 54.900000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 19968 20148 0 181 LSC 0.000000 0 0 89 300 no 0.000000 1 0.000000 0.000000 1.000000 25.400000 rpoC1 gene rpoC1 rpoC1 20149 22977 -1 2829 LSC 0.000707 3 0 270 300 no 0.333333 2 0.500000 0.000707 1.000000 43.900000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 22978 23003 0 26 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpoB gene rpoB rpoB 23004 26222 -1 3219 LSC 0.000828 4 0 300 300 no 0.333333 2 0.500000 0.000828 1.000000 43.300000 IGS_023 igs rpoB|trnC rpoB-trnC 26223 27339 0 1117 LSC 0.000597 1 0 300 300 no 0.333333 2 0.500000 0.000597 1.000000 46.600000 trnC tRNA trnC trnC 27340 27410 1 71 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_024 igs trnC|petN trnC-petN 27411 28035 0 625 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 petN gene petN petN 28036 28125 1 90 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_025 igs petN|psbM petN-psbM 28126 28680 0 555 LSC 0.001201 1 0 300 300 no 0.333333 2 0.500000 0.001201 1.000000 46.100000 psbM gene psbM psbM 28681 28785 -1 105 LSC 0.000000 0 0 32 300 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_026 igs psbM|trnD psbM-trnD 28786 29831 0 1046 LSC 0.001275 2 0 137 131 no 0.333333 2 0.500000 0.001275 1.000000 41.900000 trnD tRNA trnD trnD 29832 29905 -1 74 LSC 0.000000 0 0 300 57 no 0.000000 1 0.000000 0.000000 1.000000 23.000000 IGS_027 igs trnD|trnY trnD-trnY 29906 30343 0 438 LSC 0.006088 4 0 300 108 yes 0.333333 2 0.500000 0.006088 1.000000 39.900000 trnY tRNA trnY trnY 30344 30427 -1 84 LSC 0.000000 0 0 232 24 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_028 igs trnY|trnE trnY-trnE 30428 30486 0 59 LSC 0.011299 1 0 300 300 no 0.333333 2 0.500000 0.011299 1.000000 47.200000 trnE tRNA trnE trnE 30487 30559 -1 73 LSC 0.000000 0 0 34 300 no 0.000000 1 0.000000 0.000000 1.000000 21.300000 IGS_029 igs trnE|trnT trnE-trnT 30560 31363 0 804 LSC 0.001658 2 0 107 85 no 0.333333 2 0.500000 0.001658 1.000000 38.700000 trnT tRNA trnT trnT 31364 31435 1 72 LSC 0.000000 0 0 3 13 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_030 igs trnT|psbD trnT-psbD 31436 32692 0 1257 LSC 0.002652 5 1 75 300 no 0.333333 2 0.500000 0.002654 1.000000 38.700000 psbD gene psbD psbD 32693 33754 1 1062 LSC 0.000628 1 0 292 300 no 0.333333 2 0.500000 0.000628 1.000000 46.700000 psbC gene psbC psbC 33702 35123 1 1422 LSC 0.000000 0 0 300 92 yes 0.000000 1 0.000000 0.000000 1.000000 31.900000 IGS_032 igs psbC|trnS psbC-trnS 35124 35303 0 180 LSC 0.025926 7 0 300 300 yes 0.333333 2 0.500000 0.025926 1.000000 56.500000 trnS tRNA trnS trnS 35304 35396 1 93 LSC 0.000000 0 0 79 300 no 0.000000 1 0.000000 0.000000 1.000000 24.700000 IGS_033 igs trnS|psbZ trnS-psbZ 35397 35742 0 346 LSC 0.000000 0 0 172 295 no 0.000000 1 0.000000 0.000000 1.000000 32.600000 psbZ gene psbZ psbZ 35743 35931 1 189 LSC 0.000000 0 0 300 106 no 0.000000 1 0.000000 0.000000 1.000000 26.700000 IGS_034 igs psbZ|trnG psbZ-trnG 35932 36415 0 484 LSC 0.004132 3 0 300 300 no 0.333333 2 0.500000 0.004132 1.000000 46.500000 IGS_035 igs trnG|trnfM trnG-trnfM 36487 36637 0 151 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnfM tRNA trnfM trnfM 36638 36711 -1 74 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_036 igs trnfM|rps14 trnfM-rps14 36712 36871 0 160 LSC 0.000000 0 0 300 144 no 0.000000 1 0.000000 0.000000 1.000000 29.500000 rps14 gene rps14 rps14 36872 37174 -1 303 LSC 0.002200 1 0 300 300 no 0.333333 2 0.500000 0.002200 1.000000 41.500000 IGS_037 igs rps14|psaB rps14-psaB 37175 37308 0 134 LSC 0.000000 0 0 158 300 no 0.000000 1 0.000000 0.000000 1.000000 30.600000 psaB gene psaB psaB 37309 39513 -1 2205 LSC 0.000302 1 0 292 300 no 0.333333 2 0.500000 0.000302 1.000000 45.000000 IGS_038 igs psaB|psaA psaB-psaA 39514 39538 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 39539 41791 -1 2253 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 38.400000 IGS_039 igs psaA|ycf3 psaA-ycf3 41792 42516 0 725 LSC 0.000000 0 1 300 231 no 0.333333 2 0.500000 0.000000 1.000000 46.400000 ycf3 gene ycf3 ycf3 42517 44532 -1 2016 LSC 0.000661 2 1 300 140 no 0.333333 2 0.500000 0.000662 1.000000 41.200000 IGS_040 igs ycf3|trnS ycf3-trnS 44533 44774 0 242 LSC 0.002755 1 0 154 300 no 0.333333 2 0.500000 0.002755 1.000000 38.300000 trnS tRNA trnS trnS 44775 44861 1 87 LSC 0.000000 0 0 101 300 no 0.000000 1 0.000000 0.000000 1.000000 26.300000 IGS_041 igs trnS|rps4 trnS-rps4 44862 45126 0 265 LSC 0.000000 0 0 188 300 no 0.000000 1 0.000000 0.000000 1.000000 32.900000 rps4 gene rps4 rps4 45127 45732 -1 606 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_042 igs rps4|trnT rps4-trnT 45733 46123 0 391 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 35.600000 trnT tRNA trnT trnT 46124 46196 -1 73 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_043 igs trnT|trnL trnT-trnL 46197 46997 0 801 LSC 0.000832 1 2 300 284 no 0.333333 2 0.500000 0.000834 1.000000 47.100000 trnL_part1 tRNA trnL trnL 46998 47032 1 35 LSC 0.000000 0 0 206 249 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnL_part2 tRNA trnL trnL 47354 47403 1 50 LSC 0.000000 0 0 71 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_046 igs trnL|trnF trnL-trnF 47404 47746 0 343 LSC 0.011662 6 0 121 121 no 1.000000 3 1.000000 0.011662 1.000000 54.900000 trnF tRNA trnF trnF 47747 47819 1 73 LSC 0.000000 0 0 147 48 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_047 igs trnF|ndhJ trnF-ndhJ 47820 48424 0 605 LSC 0.001102 1 2 220 300 no 0.333333 2 0.500000 0.001106 1.000000 47.300000 ndhJ gene ndhJ ndhJ 48425 48901 -1 477 LSC 0.001398 1 0 300 269 no 0.333333 2 0.500000 0.001398 1.000000 44.600000 IGS_048 igs ndhJ|ndhK ndhJ-ndhK 48902 49002 0 101 LSC 0.000000 0 0 24 168 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 ndhK gene ndhK ndhK 49003 49680 -1 678 LSC 0.002950 3 0 125 48 no 0.333333 2 0.500000 0.002950 1.000000 36.700000 IGS_049 igs ndhK|ndhC ndhK-ndhC 49681 49745 0 65 LSC 0.010256 1 1 40 96 no 0.333333 2 0.500000 0.010417 1.000000 36.300000 ndhC gene ndhC ndhC 49746 50108 -1 363 LSC 0.001837 1 0 16 300 no 0.333333 2 0.500000 0.001837 1.000000 28.700000 IGS_050 igs ndhC|trnV ndhC-trnV 50109 50978 0 870 LSC 0.003065 4 0 266 300 yes 0.333333 2 0.500000 0.003065 1.000000 48.200000 trnV_part2 tRNA trnV trnV 50979 51013 -1 35 LSC 0.000000 0 0 74 300 no 0.000000 1 0.000000 0.000000 1.000000 24.300000 trnV_part1 tRNA trnV trnV 51622 51660 -1 39 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_053 igs trnV|trnM trnV-trnM 51661 51844 0 184 LSC 0.000000 0 0 300 216 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnM tRNA trnM trnM 51845 51917 1 73 LSC 0.000000 0 0 300 143 no 0.000000 1 0.000000 0.000000 1.000000 29.500000 IGS_054 igs trnM|atpE trnM-atpE 51918 52053 0 136 LSC 0.000000 0 0 300 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 atpE gene atpE atpE 52054 52452 -1 399 LSC 0.003342 2 0 300 221 yes 1.000000 3 1.000000 0.003342 1.000000 56.700000 atpB gene atpB atpB 52449 53945 -1 1497 LSC 0.001336 3 0 248 300 no 0.333333 2 0.500000 0.001336 1.000000 47.100000 IGS_056 igs atpB|rbcL atpB-rbcL 53946 54745 0 800 LSC 0.000000 0 1 300 300 no 0.333333 2 0.500000 0.000000 1.000000 46.400000 rbcL gene rbcL rbcL 54746 56185 1 1440 LSC 0.000463 1 0 300 281 no 0.333333 2 0.500000 0.000463 1.000000 46.500000 IGS_057 igs rbcL|accD rbcL-accD 56186 56900 0 715 LSC 0.001867 2 4 246 300 yes 1.000000 3 1.000000 0.001875 0.998601 60.500000 accD gene accD accD 56901 58355 1 1455 LSC 0.001375 3 0 68 290 no 0.333333 2 0.500000 0.001375 1.000000 37.200000 IGS_058 igs accD|psaI accD-psaI 58356 59033 0 678 LSC 0.000983 1 0 300 175 no 0.333333 2 0.500000 0.000983 1.000000 45.000000 psaI gene psaI psaI 59034 59147 1 114 LSC 0.000000 0 0 300 61 no 0.000000 1 0.000000 0.000000 1.000000 23.300000 IGS_059 igs psaI|ycf4 psaI-ycf4 59148 59561 0 414 LSC 0.003221 2 0 300 300 no 0.333333 2 0.500000 0.003221 1.000000 44.400000 ycf4 gene ycf4 ycf4 59562 60116 1 555 LSC 0.000000 0 0 14 242 no 0.000000 1 0.000000 0.000000 1.000000 25.100000 IGS_060 igs ycf4|cemA ycf4-cemA 60117 60582 0 466 LSC 0.004292 3 1 300 300 no 0.333333 2 0.500000 0.004301 1.000000 46.400000 cemA gene cemA cemA 60583 61275 1 693 LSC 0.000000 0 0 90 300 no 0.000000 1 0.000000 0.000000 1.000000 31.800000 IGS_061 igs cemA|petA cemA-petA 61276 61499 0 224 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 petA gene petA petA 61500 62462 1 963 LSC 0.000000 0 0 300 114 no 0.000000 1 0.000000 0.000000 1.000000 33.600000 IGS_062 igs petA|psbJ petA-psbJ 62463 63428 0 966 LSC 0.002761 4 0 300 300 yes 0.333333 2 0.500000 0.002761 1.000000 48.000000 psbJ gene psbJ psbJ 63429 63551 -1 123 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_063 igs psbJ|psbL psbJ-psbL 63552 63694 0 143 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbL gene psbL psbL 63695 63811 -1 117 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_064 igs psbL|psbF psbL-psbF 63812 63832 0 21 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbF gene psbF psbF 63833 63952 -1 120 LSC 0.000000 0 0 300 198 no 0.000000 1 0.000000 0.000000 1.000000 33.600000 IGS_065 igs psbF|psbE psbF-psbE 63953 63961 0 9 LSC 0.000000 0 0 300 189 no 0.000000 1 0.000000 NA 1.000000 32.900000 psbE gene psbE psbE 63962 64213 -1 252 LSC 0.002646 1 0 300 300 no 0.333333 2 0.500000 0.002646 1.000000 41.700000 IGS_066 igs psbE|petL psbE-petL 64214 65629 0 1416 LSC 0.000474 1 451 62 300 no 1.000000 3 1.000000 0.000691 0.993644 51.500000 petL gene petL petL 65630 65725 1 96 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_067 igs petL|petG petL-petG 65726 65903 0 178 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 petG gene petG petG 65904 66017 1 114 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_068 igs petG|trnW petG-trnW 66018 66146 0 129 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnW tRNA trnW trnW 66147 66220 -1 74 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_069 igs trnW|trnP trnW-trnP 66221 66410 0 190 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnP tRNA trnP trnP 66411 66484 -1 74 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_070 igs trnP|psaJ trnP-psaJ 66485 66822 0 338 LSC 0.000000 0 1 300 165 no 0.333333 2 0.500000 0.000000 1.000000 38.500000 psaJ gene psaJ psaJ 66823 66957 1 135 LSC 0.000000 0 0 300 30 no 0.000000 1 0.000000 0.000000 1.000000 21.000000 IGS_071 igs psaJ|rpl33 psaJ-rpl33 66958 67387 0 430 LSC 0.003101 2 2 300 55 no 1.000000 3 1.000000 0.003112 1.000000 46.800000 rpl33 gene rpl33 rpl33 67388 67588 1 201 LSC 0.006633 2 0 257 46 no 0.333333 2 0.500000 0.006633 1.000000 32.700000 IGS_072 igs rpl33|rps18 rpl33-rps18 67589 67801 0 213 LSC 0.003130 1 0 90 300 no 0.333333 2 0.500000 0.003130 1.000000 33.700000 rps18 gene rps18 rps18 67802 68107 1 306 LSC 0.000000 0 0 166 300 no 0.000000 1 0.000000 0.000000 1.000000 31.300000 IGS_073 igs rps18|rpl20 rps18-rpl20 68108 68404 0 297 LSC 0.000000 0 0 300 140 no 0.000000 1 0.000000 0.000000 1.000000 29.200000 rpl20 gene rpl20 rpl20 68405 68758 -1 354 LSC 0.003766 2 0 300 210 yes 1.000000 3 1.000000 0.003766 1.000000 56.000000 IGS_074 igs rpl20|rps12 rpl20-rps12 68759 69519 0 761 LSC 0.000876 1 0 164 300 no 0.333333 2 0.500000 0.000876 1.000000 44.100000 rps12_part1 gene rps12 rps12 69520 69633 -1 114 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_075 igs rps12|clpP rps12-clpP 69634 69804 0 171 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 clpP gene clpP clpP 69805 71773 -1 1969 LSC 0.000339 1 0 300 222 no 0.333333 2 0.500000 0.000339 1.000000 45.500000 IGS_076 igs clpP|psbB clpP-psbB 71774 72256 0 483 LSC 0.002761 2 1 300 300 no 0.333333 2 0.500000 0.002766 1.000000 45.800000 psbB gene psbB psbB 72257 73783 1 1527 LSC 0.000000 0 0 9 300 no 0.000000 1 0.000000 0.000000 1.000000 25.600000 IGS_077 igs psbB|psbT psbB-psbT 73784 73965 0 182 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbT gene psbT psbT 73966 74067 1 102 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_078 igs psbT|psbN psbT-psbN 74068 74132 0 65 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbN gene psbN psbN 74133 74264 -1 132 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_079 igs psbN|psbH psbN-psbH 74265 74368 0 104 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbH gene psbH psbH 74369 74590 1 222 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_080 igs psbH|petB psbH-petB 74591 74724 0 134 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 petB gene petB petB 74725 76167 1 1443 LSC 0.001848 4 5 300 300 yes 1.000000 3 1.000000 0.001852 1.000000 60.300000 IGS_081 igs petB|petD petB-petD 76168 76359 0 192 LSC 0.000000 0 0 93 110 no 0.000000 1 0.000000 0.000000 1.000000 25.700000 petD gene petD petD 76360 77567 1 1208 LSC 0.001656 3 1 285 23 yes 1.000000 3 1.000000 0.001656 1.000000 46.600000 IGS_082 igs petD|rpoA petD-rpoA 77568 77768 0 201 LSC 0.003317 1 0 300 16 no 0.333333 2 0.500000 0.003317 1.000000 28.300000 rpoA gene rpoA rpoA 77769 78752 -1 984 LSC 0.002710 4 0 177 168 yes 1.000000 3 1.000000 0.002710 1.000000 58.100000 IGS_083 igs rpoA|rps11 rpoA-rps11 78753 78821 0 69 LSC 0.000000 0 0 300 99 no 0.000000 1 0.000000 0.000000 1.000000 26.200000 rps11 gene rps11 rps11 78822 79238 -1 417 LSC 0.003197 2 0 300 300 no 0.333333 2 0.500000 0.003197 1.000000 44.500000 IGS_084 igs rps11|rpl36 rps11-rpl36 79239 79357 0 119 LSC 0.000000 0 0 272 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl36 gene rpl36 rpl36 79358 79471 -1 114 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_085 igs rpl36|rps8 rpl36-rps8 79472 79943 0 472 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 rps8 gene rps8 rps8 79944 80348 -1 405 LSC 0.000000 0 0 300 130 no 0.000000 1 0.000000 0.000000 1.000000 30.700000 IGS_086 igs rps8|rpl14 rps8-rpl14 80349 80568 0 220 LSC 0.006061 2 0 300 300 no 0.333333 2 0.500000 0.006061 1.000000 43.900000 rpl14 gene rpl14 rpl14 80569 80937 -1 369 LSC 0.000000 0 0 26 300 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 IGS_087 igs rpl14|rpl16 rpl14-rpl16 80938 81064 0 127 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl16 gene rpl16 rpl16 81065 82584 -1 1520 LSC 0.001754 4 3 300 85 yes 0.333333 2 0.500000 0.001758 1.000000 38.900000 IGS_088 igs rpl16|rps3 rpl16-rps3 82585 82760 0 176 LSC 0.003788 1 0 252 300 no 0.333333 2 0.500000 0.003788 1.000000 42.400000 rps3 gene rps3 rps3 82761 83417 -1 657 LSC 0.000000 0 0 90 50 no 0.000000 1 0.000000 0.000000 1.000000 28.700000 rpl22 gene rpl22 rpl22 83402 83884 -1 483 LSC 0.004141 3 0 300 300 no 0.333333 2 0.500000 0.004141 1.000000 46.500000 IGS_090 igs rpl22|rps19 rpl22-rps19 83885 83938 0 54 LSC 0.000000 0 0 250 255 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps19 gene rps19 rps19 83939 84217 -1 279 LSC 0.002389 1 0 300 300 no 0.333333 2 0.500000 0.002389 1.000000 41.500000 IGS_091 igs rps19|rpl2 rps19-rpl2 84218 84271 0 54 IRb 0.000000 0 0 23 300 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 rpl2 gene rpl2 rpl2 84272 85778 -1 1507 IRb 0.000000 0 0 77 300 no 0.000000 1 0.000000 0.000000 1.000000 30.800000 IGS_092 igs rpl2|rpl23 rpl2-rpl23 85779 85796 0 18 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 85797 86078 -1 282 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_093 igs rpl23|trnI rpl23-trnI 86079 86246 0 168 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_094 igs trnI|ycf2 trnI-ycf2 86321 86408 0 88 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 86409 93296 1 6888 IRb 0.000194 2 0 300 300 no 0.333333 2 0.500000 0.000194 1.000000 40.100000 IGS_095 igs ycf2|trnL ycf2-trnL 93297 94215 0 919 IRb 0.000725 1 0 300 300 no 0.333333 2 0.500000 0.000725 1.000000 46.700000 IGS_096 igs trnL|ndhB trnL-ndhB 94297 94878 0 582 IRb 0.000000 0 0 100 300 no 0.000000 1 0.000000 0.000000 1.000000 32.100000 ndhB gene ndhB ndhB 94879 97102 -1 2224 IRb 0.000300 1 0 300 300 no 0.333333 2 0.500000 0.000300 1.000000 44.900000 IGS_097 igs ndhB|rps7 ndhB-rps7 97103 97415 0 313 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.000000 rps7 gene rps7 rps7 97416 97883 -1 468 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_098 igs rps7|rps12 rps7-rps12 97884 97936 0 53 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 97937 98731 -1 795 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_099 igs rps12|trnV rps12-trnV 98732 100643 0 1912 IRb 0.000000 0 2 300 300 no 0.333333 2 0.500000 0.000000 1.000000 45.500000 IGS_100 igs trnV|rrn16S trnV-rrn16S 100716 100946 0 231 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 100947 102437 1 1491 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_101 igs rrn16S|trnI rrn16S-trnI 102438 102660 0 223 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 102661 102697 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 103646 103680 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_104 igs trnI|trnA trnI-trnA 103681 103744 0 64 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 103745 103782 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 104583 104617 1 35 IRb 0.000000 0 0 181 300 no 0.000000 1 0.000000 0.000000 1.000000 32.300000 IGS_107 igs trnA|rrn23S trnA-rrn23S 104618 104769 0 152 IRb 0.000000 0 0 216 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 104770 107579 1 2810 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_108 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 107580 107677 0 98 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 107678 107780 1 103 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_109 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 107781 108027 0 247 IRb 0.000000 0 0 300 141 no 0.000000 1 0.000000 0.000000 1.000000 29.300000 rrn5S rRNA rrn5S rrn5S 108028 108148 1 121 IRb 0.000000 0 0 300 20 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_110 igs rrn5S|trnR rrn5S-trnR 108149 108394 0 246 IRb 0.002710 1 0 300 300 no 0.333333 2 0.500000 0.002710 1.000000 41.700000 trnR tRNA trnR trnR 108395 108468 1 74 IRb 0.000000 0 0 225 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_111 igs trnR|trnN trnR-trnN 108469 109110 0 642 IRb 0.000000 0 0 299 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 trnN tRNA trnN trnN 109111 109182 -1 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_112 igs trnN|ycf1 trnN-ycf1 109183 109502 0 320 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.200000 ycf1 gene ycf1 ycf1 109503 110543 1 1041 IRb 0.000640 1 0 300 300 no 0.333333 2 0.500000 0.000640 1.000000 46.700000 ndhF gene ndhF ndhF 110505 112745 -1 2241 SSC 0.001785 6 0 106 261 no 0.333333 2 0.500000 0.001785 1.000000 38.800000 IGS_114 igs ndhF|rpl32 ndhF-rpl32 112746 113541 0 796 SSC 0.001675 2 3 300 38 no 0.333333 2 0.500000 0.001681 1.000000 35.600000 rpl32 gene rpl32 rpl32 113542 113715 1 174 SSC 0.003831 1 0 199 151 no 0.333333 2 0.500000 0.003831 1.000000 38.800000 IGS_115 igs rpl32|trnL rpl32-trnL 113716 114637 0 922 SSC 0.003615 5 165 135 266 yes 0.333333 2 0.500000 0.004403 1.000000 48.100000 IGS_116 igs trnL|ccsA trnL-ccsA 114718 114829 0 112 SSC 0.000000 0 0 300 74 no 0.000000 1 0.000000 0.000000 1.000000 24.300000 ccsA gene ccsA ccsA 114830 115816 1 987 SSC 0.002702 4 0 300 75 no 0.333333 2 0.500000 0.002702 1.000000 38.600000 IGS_117 igs ccsA|ndhD ccsA-ndhD 115817 116032 0 216 SSC 0.006173 2 0 300 300 no 0.333333 2 0.500000 0.006173 1.000000 43.900000 ndhD gene ndhD ndhD 116033 117535 -1 1503 SSC 0.002218 5 0 48 300 no 0.333333 2 0.500000 0.002218 1.000000 36.300000 IGS_118 igs ndhD|psaC ndhD-psaC 117536 117690 0 155 SSC 0.000000 0 0 95 300 no 0.000000 1 0.000000 0.000000 1.000000 25.900000 psaC gene psaC psaC 117691 117936 -1 246 SSC 0.000000 0 0 250 155 no 0.000000 1 0.000000 0.000000 1.000000 30.400000 IGS_119 igs psaC|ndhE psaC-ndhE 117937 118177 0 241 SSC 0.002766 1 0 300 300 no 0.333333 2 0.500000 0.002766 1.000000 41.800000 ndhE gene ndhE ndhE 118178 118483 -1 306 SSC 0.000000 0 0 85 300 no 0.000000 1 0.000000 0.000000 1.000000 25.200000 IGS_120 igs ndhE|ndhG ndhE-ndhG 118484 118740 0 257 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ndhG gene ndhG ndhG 118741 119271 -1 531 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 38.600000 IGS_121 igs ndhG|ndhI ndhG-ndhI 119272 119607 0 336 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.500000 ndhI gene ndhI ndhI 119608 120111 -1 504 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 38.000000 IGS_122 igs ndhI|ndhA ndhI-ndhA 120112 120195 0 84 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ndhA gene ndhA ndhA 120196 122367 -1 2172 SSC 0.000614 2 1 300 300 no 0.333333 2 0.500000 0.000614 1.000000 45.300000 IGS_123 igs ndhA|ndhH ndhA-ndhH 122368 122368 0 1 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 ndhH gene ndhH ndhH 122369 123550 -1 1182 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_124 igs ndhH|rps15 ndhH-rps15 123551 123652 0 102 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps15 gene rps15 rps15 123653 123919 -1 267 SSC 0.000000 0 0 300 191 no 0.000000 1 0.000000 0.000000 1.000000 33.100000 IGS_125 igs rps15|ycf1 rps15-ycf1 123920 124251 0 332 SSC 0.004016 2 0 300 237 no 0.333333 2 0.500000 0.004016 1.000000 43.200000 ycf1 gene ycf1 ycf1 124252 129594 -1 5343 SSC 0.002995 24 0 60 300 yes 1.000000 3 1.000000 0.002995 1.000000 43.900000 IGS_126 igs ycf1|trnN ycf1-trnN 129595 129914 0 320 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.200000 trnN tRNA trnN trnN 129915 129986 1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_127 igs trnN|trnR trnN-trnR 129987 130628 0 642 IRa 0.000000 0 0 300 299 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 trnR tRNA trnR trnR 130629 130702 -1 74 IRa 0.000000 0 0 300 225 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_128 igs trnR|rrn5S trnR-rrn5S 130703 130948 0 246 IRa 0.002710 1 0 300 300 no 0.333333 2 0.500000 0.002710 1.000000 41.700000 rrn5S rRNA rrn5S rrn5S 130949 131069 -1 121 IRa 0.000000 0 0 20 300 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_129 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 131070 131316 0 247 IRa 0.000000 0 0 141 300 no 0.000000 1 0.000000 0.000000 1.000000 29.300000 rrn4.5S rRNA rrn4.5S rrn4.5S 131317 131419 -1 103 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_130 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 131420 131517 0 98 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 131518 134327 -1 2810 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_131 igs rrn23S|trnA rrn23S-trnA 134328 134479 0 152 IRa 0.000000 0 0 300 216 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 134480 134514 -1 35 IRa 0.000000 0 0 300 181 no 0.000000 1 0.000000 0.000000 1.000000 32.300000 trnA_part1 tRNA trnA trnA 135315 135352 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_134 igs trnA|trnI trnA-trnI 135353 135416 0 64 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 135417 135451 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 136400 136436 -1 37 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_137 igs trnI|rrn16S trnI-rrn16S 136437 136659 0 223 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 136660 138150 -1 1491 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_138 igs rrn16S|trnV rrn16S-trnV 138151 138381 0 231 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_139 igs trnV|rps12 trnV-rps12 138454 140365 0 1912 IRa 0.000000 0 2 300 300 no 0.333333 2 0.500000 0.000000 1.000000 45.500000 rps12_part2 gene rps12 rps12 140366 141160 1 795 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_140 igs rps12|rps7 rps12-rps7 141161 141213 0 53 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 141214 141681 1 468 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_141 igs rps7|ndhB rps7-ndhB 141682 141994 0 313 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.000000 ndhB gene ndhB ndhB 141995 144218 1 2224 IRa 0.000300 1 0 300 300 no 0.333333 2 0.500000 0.000300 1.000000 44.900000 IGS_142 igs ndhB|trnL ndhB-trnL 144219 144800 0 582 IRa 0.000000 0 0 300 100 no 0.000000 1 0.000000 0.000000 1.000000 32.100000 IGS_143 igs trnL|ycf2 trnL-ycf2 144882 145800 0 919 IRa 0.000725 1 0 300 300 no 0.333333 2 0.500000 0.000725 1.000000 46.700000 ycf2 gene ycf2 ycf2 145801 152688 -1 6888 IRa 0.000194 2 0 300 300 no 0.333333 2 0.500000 0.000194 1.000000 40.100000 IGS_144 igs ycf2|trnI ycf2-trnI 152689 152776 0 88 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_145 igs trnI|rpl23 trnI-rpl23 152851 153018 0 168 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 153019 153300 1 282 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_146 igs rpl23|rpl2 rpl23-rpl2 153301 153318 0 18 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 153319 154825 1 1507 IRa 0.000000 0 0 300 77 no 0.000000 1 0.000000 0.000000 1.000000 30.800000 IGS_147 igs rpl2|trnH rpl2-trnH 154826 3 0 170 IRa 0.003922 1 0 300 273 no 0.333333 2 0.500000 0.003922 1.000000 42.500000