primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score trnH-GUG-psbA_p1 trnH-GUG-psbA 1 GATCCACTTGGCTACATCCG GGCCTGTAGTGGGTATTTGG 20 20 55.0 55.0 58.1 57.9 0.0 0.0 0.181702 71 336 512-517 1.000000 86.3 trnH-GUG-psbA_p2 trnH-GUG-psbA 2 GATCCACTTGGCTACATCCG ATATTCAGCTCCGGTTGCAG 20 20 55.0 50.0 58.1 58.0 0.0 20.4 0.169878 71 336 907-912 1.000000 83.0 trnH-GUG-psbA_p3 trnH-GUG-psbA 3 CAATCCACTGCCTTGATCCA ATATTCAGCTCCGGTTGCAG 20 20 50.0 50.0 57.9 58.0 0.0 20.4 0.174240 71 336 921-926 1.000000 82.9 trnH-GUG-psbA_p4 trnH-GUG-psbA 4 AATCCACTGCCTTGATCCAC ATATTCAGCTCCGGTTGCAG 20 20 50.0 50.0 57.9 58.0 0.0 20.4 0.175747 71 336 920-925 1.000000 82.9 trnH-GUG-psbA_p5 trnH-GUG-psbA 5 ACAATCCACTGCCTTGATCC ATATTCAGCTCCGGTTGCAG 20 20 50.0 50.0 57.9 58.0 0.0 20.4 0.175747 71 336 922-927 1.000000 82.9 rps16-trnQ-UUG_p1 rps16-trnQ-UUG 1 AAGTCGCACGTTGCTTTCTA GAGGTTCGAATCCTTCCGTC 20 20 45.0 55.0 58.1 58.1 8.1 16.9 0.215425 5882 6379 571-639 1.000000 85.5 rps16-trnQ-UUG_p2 rps16-trnQ-UUG 2 CCACAACAGATCGTGTCCTT GAGGTTCGAATCCTTCCGTC 20 20 50.0 55.0 57.8 58.1 0.0 16.9 0.245933 5882 6379 592-660 1.000000 85.0 rps16-trnQ-UUG_p3 rps16-trnQ-UUG 3 AAGTCGCACGTTGCTTTCTA TAAGGCATCGGGTTTTGGTC 20 20 45.0 50.0 58.1 58.2 8.1 0.0 0.310345 5882 6379 601-669 1.000000 84.4 rps16-trnQ-UUG_p4 rps16-trnQ-UUG 4 CCACAACAGATCGTGTCCTT TAAGGCATCGGGTTTTGGTC 20 20 50.0 50.0 57.8 58.2 0.0 0.0 0.340853 5882 6379 622-690 1.000000 83.9 rps16-trnQ-UUG_p5 rps16-trnQ-UUG 5 ATCCACAACAGATCGTGTCC GAGGTTCGAATCCTTCCGTC 20 20 50.0 55.0 57.6 58.1 0.0 16.9 0.462762 5882 6379 594-662 1.000000 83.2 psbI-trnS-GCU_p1 psbI-trnS-GCU 1 GTAATCCTGGACGCGAAGAA GATGGCTGAGTGGACGAAAG 20 20 50.0 55.0 57.7 58.6 15.9 0.0 0.925217 7515 7699 291-313 1.000000 83.9 psbI-trnS-GCU_p2 psbI-trnS-GCU 2 GTAATCCTGGACGCGAAGAA TTCGAATCCCTCTCTTTCCG 20 20 50.0 50.0 57.7 57.0 15.9 0.0 1.250487 7515 7699 228-250 1.000000 82.0 psbI-trnS-GCU_p3 psbI-trnS-GCU 3 GTAATCCTGGACGCGAAGAA CGAAAGCGTCGGATTGCTAA 20 20 50.0 50.0 57.7 59.0 15.9 7.9 1.292499 7515 7699 277-299 1.000000 81.4 psbI-trnS-GCU_p4 psbI-trnS-GCU 4 GTAATCCTGGACGCGAAGAA GGGTTCGAATCCCTCTCTTT 20 20 50.0 50.0 57.7 56.9 15.9 17.2 1.371516 7515 7699 231-253 1.000000 81.0 psbI-trnS-GCU_p5 psbI-trnS-GCU 5 GTAATCCTGGACGCGAAGAA AGATGGCTGAGTGGACGAAA 20 20 50.0 50.0 57.7 59.0 15.9 0.0 1.312320 7515 7699 292-314 1.000000 80.8 trnR-UCU-atpA_p1 trnR-UCU-atpA 1 AGCCTTCCAAGCTAACGATG GAGGAAGCAGAAGCCCTTTT 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.113333 9595 9746 480-483 1.000000 83.3 trnR-UCU-atpA_p2 trnR-UCU-atpA 2 AGCCTTCCAAGCTAACGATG GGGATCTGCGGCTCAAATTA 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.062520 9595 9746 829-832 1.000000 83.0 trnR-UCU-atpA_p3 trnR-UCU-atpA 3 AGCCTTCCAAGCTAACGATG TAAACAACCCCAATCTGCCC 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.098203 9595 9746 667-670 1.000000 83.0 trnR-UCU-atpA_p4 trnR-UCU-atpA 4 CCTAGCCTTCCAAGCTAACG TAAACAACCCCAATCTGCCC 20 20 55.0 50.0 58.1 58.1 0.0 0.0 0.127040 9595 9746 670-673 1.000000 82.8 trnR-UCU-atpA_p5 trnR-UCU-atpA 5 CCTAGCCTTCCAAGCTAACG GGGATCTGCGGCTCAAATTA 20 20 55.0 50.0 58.1 58.0 0.0 0.0 0.091356 9595 9746 832-835 1.000000 82.7 ycf3-trnS-GGA_p1 ycf3-trnS-GGA 1 ACTTCACCTTCAACAAGCGT TGAACCACTCGGACATCTCT 20 20 45.0 50.0 58.0 58.1 0.0 0.0 0.113656 44537 45966 1055-1751 1.000000 91.1 ycf3-trnS-GGA_p2 ycf3-trnS-GGA 2 ACTTCACCTTCAACAAGCGT CCCTCGGTAAACAAAAGCCT 20 20 45.0 50.0 58.0 58.1 0.0 0.0 0.132749 44537 45966 1100-1796 1.000000 90.9 ycf3-trnS-GGA_p3 ycf3-trnS-GGA 3 ACTTCACCTTCAACAAGCGT TCCCCCGTCTCGAATTTTTC 20 20 45.0 50.0 58.0 57.9 0.0 0.0 0.141924 44537 45966 1347-2051 1.000000 90.9 ycf3-trnS-GGA_p4 ycf3-trnS-GGA 4 ACTTCACCTTCAACAAGCGT AGTCAGGGGTTTGATCTGGA 20 20 45.0 50.0 58.0 58.0 0.0 0.0 0.083179 44537 45966 1495-2096 0.666667 78.0 ycf3-trnS-GGA_p5 ycf3-trnS-GGA 5 ACTTCACCTTCAACAAGCGT TTGATGCCCGTACTTTCCAG 20 20 45.0 50.0 58.0 57.9 0.0 0.0 0.146337 44537 45966 1991-1991 0.333333 52.2 rps4-trnT-UGU_p1 rps4-trnT-UGU 1 AGTTAATCCGGGCAAAGCTC CTCAGAGGTTAGAGCATCGC 20 20 50.0 55.0 58.2 57.9 0.0 0.0 0.381303 47019 47494 534-605 1.000000 85.5 rps4-trnT-UGU_p2 rps4-trnT-UGU 2 AGTTAATCCGGGCAAAGCTC ATGGTCATCGGTTCGATTCC 20 20 50.0 50.0 58.2 57.8 0.0 0.0 0.489056 47019 47494 502-573 1.000000 84.9 rps4-trnT-UGU_p3 rps4-trnT-UGU 3 TAATCCGGGCAAAGCTCCTA CTCAGAGGTTAGAGCATCGC 20 20 50.0 55.0 58.5 57.9 0.0 0.0 0.630050 47019 47494 531-602 1.000000 83.5 rps4-trnT-UGU_p4 rps4-trnT-UGU 4 TAATCCGGGCAAAGCTCCTA ATGGTCATCGGTTCGATTCC 20 20 50.0 50.0 58.5 57.8 0.0 0.0 0.737803 47019 47494 499-570 1.000000 83.0 rps4-trnT-UGU_p5 rps4-trnT-UGU 5 AGTTAATCCGGGCAAAGCTC CCGCTTAGCTCAGAGGTTAG 20 20 50.0 55.0 58.2 57.5 0.0 7.6 0.749072 47019 47494 542-613 1.000000 82.5 clpP_p1 clpP 1 TAACGTTCGCTACCAATGGG AGTAGCAATACGCAATGGGG 20 20 50.0 50.0 58.0 58.0 2.8 1.6 0.045618 72686 73285 1318-2999 1.000000 88.7 clpP_p2 clpP 2 TAACGTTCGCTACCAATGGG GTAGCAATACGCAATGGGGA 20 20 50.0 50.0 58.0 58.0 2.8 1.6 0.051143 72686 73285 1317-2998 1.000000 88.6 clpP_p3 clpP 3 TAACGTTCGCTACCAATGGG ATGCAATGGACCCCTTTTGT 20 20 50.0 45.0 58.0 58.0 2.8 0.0 0.041498 72686 73285 1439-2912 0.666667 74.7 clpP_p4 clpP 4 TAACGTTCGCTACCAATGGG ATACCAAGGCAAACCCATGG 20 20 50.0 50.0 58.0 58.1 2.8 4.1 0.148268 72686 73285 1524-2997 0.666667 73.5 clpP_p5 clpP 5 TAACGTTCGCTACCAATGGG ACGCAATGGGGAGTTGATAC 20 20 50.0 50.0 58.0 58.0 2.8 1.6 0.051324 72686 73285 1309-2990 0.666667 72.8 clpP-psbB_p1 clpP-psbB 1 ACCTATCCCGGATATTGCCA ACACCCATATTCCAGGACCA 20 20 50.0 50.0 58.0 58.0 0.7 0.0 0.059054 73286 73782 1239-1239 0.333333 52.9 clpP-psbB_p2 clpP-psbB 2 ACCTATCCCGGATATTGCCA AATGCGCCAAAACCAAAACA 20 20 50.0 40.0 58.0 58.0 0.7 4.2 0.068701 73286 73782 1201-1201 0.333333 52.8 clpP-psbB_p3 clpP-psbB 3 ACCTATCCCGGATATTGCCA ATGCGCCAAAACCAAAACAA 20 20 50.0 40.0 58.0 58.0 0.7 4.2 0.068701 73286 73782 1200-1200 0.333333 52.8 clpP-psbB_p4 clpP-psbB 4 TGTTCCTCCCGCTAGTACAA ACACCCATATTCCAGGACCA 20 20 50.0 50.0 58.1 58.0 0.0 0.0 0.092703 73286 73782 1335-1335 0.333333 52.6 clpP-psbB_p5 clpP-psbB 5 TCGGGTAGCACAGATCTCAT ACACCCATATTCCAGGACCA 20 20 50.0 50.0 57.9 58.0 0.0 0.0 0.093443 73286 73782 1271-1271 0.333333 52.6 rpl22_p1 rpl22 1 CGAACCGTATAGGCGCAATA TGGGTAGAGCCGGATCTAAG 20 20 50.0 55.0 57.9 58.0 10.8 29.9 0.057889 85040 85744 1960-1972 1.000000 86.3 rpl22_p2 rpl22 2 AATTTTCGCGCGAATGGTTT TGGGTAGAGCCGGATCTAAG 20 20 40.0 55.0 57.9 58.0 41.6 29.9 0.062115 85040 85744 1937-1949 1.000000 86.3 rpl22_p3 rpl22 3 CGAACCGTATAGGCGCAATA GGGCCCCAATTGGTAGAAAA 20 20 50.0 50.0 57.9 58.1 10.8 22.9 0.109107 85040 85744 1861-1873 1.000000 86.2 rpl22_p4 rpl22 4 CGAACCGTATAGGCGCAATA GAGGGTAAATCGGCCACATT 20 20 50.0 50.0 57.9 57.9 10.8 2.2 0.107470 85040 85744 2072-2084 1.000000 85.6 rpl22_p5 rpl22 5 AATTTTCGCGCGAATGGTTT GAGGGTAAATCGGCCACATT 20 20 40.0 50.0 57.9 57.9 41.6 2.2 0.111696 85040 85744 2049-2061 1.000000 85.6 rpl2-trnI-CAU_p1 rpl2-trnI-CAU 1 AATGTGGCCGATTTACCCTC GAATGGTTAAAGCGCCCAAC 20 20 50.0 50.0 57.9 58.0 0.0 2.3 0.061983 86985 87628 1042-1239 1.000000 91.0 rpl2-trnI-CAU_p2 rpl2-trnI-CAU 2 CTTAGATCCGGCTCTACCCA GAATGGTTAAAGCGCCCAAC 20 20 55.0 50.0 58.0 58.0 14.5 2.3 0.012402 86985 87628 1154-1351 1.000000 90.8 rpl2-trnI-CAU_p3 rpl2-trnI-CAU 3 CTTAGATCCGGCTCTACCCA ATTCACCATGCACGAGGATC 20 20 55.0 50.0 58.0 58.0 14.5 8.5 0.044160 86985 87628 1194-1391 1.000000 90.4 rpl2-trnI-CAU_p4 rpl2-trnI-CAU 4 CTTAGATCCGGCTCTACCCA GGAGCGAAACAATCAGCCTA 20 20 55.0 50.0 58.0 58.0 14.5 0.0 0.027377 86985 87628 1677-1926 1.000000 90.3 rpl2-trnI-CAU_p5 rpl2-trnI-CAU 5 TTTTCTACCAATTGGGGCCC GAATGGTTAAAGCGCCCAAC 20 20 50.0 50.0 58.1 58.0 27.9 2.3 0.063621 86985 87628 1253-1450 1.000000 89.9 trnN-GUU-ycf1_p1 trnN-GUU-ycf1 1 GGCAGAATAGCAGAGCAAGT CCTGTGGAGAATGTGGTCAG 20 20 50.0 55.0 58.0 57.9 0.0 0.0 0.140536 108628 108973 873-1353 1.000000 86.2 trnN-GUU-ycf1_p2 trnN-GUU-ycf1 2 GAACTTGGGTGTGGGTCTTT CCTGTGGAGAATGTGGTCAG 20 20 50.0 55.0 57.9 57.9 0.0 0.0 0.172372 108628 108973 1025-1515 1.000000 85.9 trnN-GUU-ycf1_p3 trnN-GUU-ycf1 3 GGCAGAATAGCAGAGCAAGT AGGAAGAGATAAGAGGGCCC 20 20 50.0 55.0 58.0 57.9 0.0 16.5 0.146283 108628 108973 891-926 0.666667 70.4 trnN-GUU-ycf1_p4 trnN-GUU-ycf1 4 GGCAGAATAGCAGAGCAAGT GGAAGAGATAAGAGGGCCCT 20 20 50.0 55.0 58.0 57.9 0.0 29.2 0.146283 108628 108973 890-925 0.666667 70.4 trnN-GUU-ycf1_p5 trnN-GUU-ycf1 5 GGCAGAATAGCAGAGCAAGT TTCCATAACCAGAGCTCGGA 20 20 50.0 50.0 58.0 58.1 0.0 25.0 0.174889 108628 108973 913-948 0.666667 70.2 ycf1_p1 ycf1 1 TTTCCTTTTGGTTCTCCCCG CCAGATTCGATATGGGACGAC 20 21 50.0 52.4 58.0 58.1 0.0 0.0 1.062441 112367 113366 1918-1918 0.333333 44.8 ycf1_p2 ycf1 2 GGGGAATGGAAACCGACTTT CCAGATTCGATATGGGACGAC 20 21 50.0 52.4 58.1 58.1 0.0 0.0 1.132907 112367 113366 1935-1935 0.333333 44.3 ycf1_p3 ycf1 3 TTTCCTTTTGGTTCTCCCCG TCCAGATTCGATATGGGACGA 20 21 50.0 47.6 58.0 58.1 0.0 10.2 1.138841 112367 113366 1919-1919 0.333333 44.2 ycf1_p4 ycf1 4 GGATACGACCTTCTCATGGC CCAGATTCGATATGGGACGAC 20 21 55.0 52.4 57.8 58.1 0.0 0.0 1.208491 112367 113366 1998-1998 0.333333 43.7 ycf1_p5 ycf1 5 GGGGAATGGAAACCGACTTT TCCAGATTCGATATGGGACGA 20 21 50.0 47.6 58.1 58.1 0.0 10.2 1.209307 112367 113366 1936-1936 0.333333 43.7 ndhF-rpl32_p1 ndhF-rpl32 1 GCCCATATACGCCGAAGATT TTAACGCTGCCCAATATCCC 20 20 50.0 50.0 57.9 58.0 0.0 0.0 0.119103 117259 118513 1449-1465 0.666667 72.7 ndhF-rpl32_p2 ndhF-rpl32 2 GCCAAAATCCCCTACACGAT TTAACGCTGCCCAATATCCC 20 20 50.0 50.0 57.9 58.0 0.0 0.0 0.077123 117259 118513 1891-1907 0.666667 71.7 ndhF-rpl32_p3 ndhF-rpl32 3 ACAAACGCTTTTTGACAGGC TTAACGCTGCCCAATATCCC 20 20 45.0 50.0 58.1 58.0 13.0 0.0 0.103097 117259 118513 1866-1882 0.666667 71.5 ndhF-rpl32_p4 ndhF-rpl32 4 CAAACGCTTTTTGACAGGCA TTAACGCTGCCCAATATCCC 20 20 45.0 50.0 58.1 58.0 2.3 0.0 0.104422 117259 118513 1865-1881 0.666667 71.5 ndhF-rpl32_p5 ndhF-rpl32 5 ACATAGGAACCGGAAGTGGA TTAACGCTGCCCAATATCCC 20 20 50.0 50.0 58.1 58.0 9.5 0.0 0.077356 117259 118513 1404-1404 0.333333 52.7 rpl32-ccsA_p1 rpl32-ccsA 1 GGGATATTGGGCAGCGTTAA ATCCGCATAAAAGAGCTGCA 20 20 50.0 45.0 58.0 58.0 0.0 1.0 0.067026 118688 119020 899-1640 0.666667 69.7 rpl32-ccsA_p2 rpl32-ccsA 2 GGGATATTGGGCAGCGTTAA TCCGCATAAAAGAGCTGCAT 20 20 50.0 45.0 58.0 58.0 0.0 1.0 0.067026 118688 119020 898-1639 0.666667 69.7 rpl32-ccsA_p3 rpl32-ccsA 3 GGGCAGCGTTAAAAGCTTTT TCCGCATAAAAGAGCTGCAT 20 20 45.0 45.0 57.9 58.0 26.5 1.0 0.191602 118688 119020 890-1631 0.666667 68.8 rpl32-ccsA_p4 rpl32-ccsA 4 GGGATATTGGGCAGCGTTAA CGAAAGGGGAGAAGCACTTT 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.126780 118688 119020 1060-1060 0.333333 52.3 rpl32-ccsA_p5 rpl32-ccsA 5 GGGATATTGGGCAGCGTTAA GAAACGAAAGGGGAGAAGCA 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.132131 118688 119020 1064-1064 0.333333 52.3 ycf1-trnN-GUU_p1 ycf1-trnN-GUU 1 CCTGTGGAGAATGTGGTCAG GGCAGAATAGCAGAGCAAGT 20 20 55.0 50.0 57.9 58.0 0.0 0.0 0.140536 134237 134582 873-1353 1.000000 86.1 ycf1-trnN-GUU_p2 ycf1-trnN-GUU 2 CCTGTGGAGAATGTGGTCAG GAACTTGGGTGTGGGTCTTT 20 20 55.0 50.0 57.9 57.9 0.0 0.0 0.172372 134237 134582 1025-1515 1.000000 85.9 ycf1-trnN-GUU_p3 ycf1-trnN-GUU 3 AGGAAGAGATAAGAGGGCCC GGCAGAATAGCAGAGCAAGT 20 20 55.0 50.0 57.9 58.0 16.5 0.0 0.146283 134237 134582 891-926 0.666667 70.6 ycf1-trnN-GUU_p4 ycf1-trnN-GUU 4 GGAAGAGATAAGAGGGCCCT GGCAGAATAGCAGAGCAAGT 20 20 55.0 50.0 57.9 58.0 29.2 0.0 0.146283 134237 134582 890-925 0.666667 70.6 ycf1-trnN-GUU_p5 ycf1-trnN-GUU 5 TTCCATAACCAGAGCTCGGA GGCAGAATAGCAGAGCAAGT 20 20 50.0 50.0 58.1 58.0 25.0 0.0 0.174889 134237 134582 913-948 0.666667 70.3 trnI-CAU-trnH-GUG_p1 trnI-CAU-trnH-GUG 1 CAACGGGACCCTCCAATAAG AGAAGAGTTCGACCCAATGC 20 20 55.0 50.0 58.0 57.9 9.4 0.0 0.138992 155794 155913 289-471 1.000000 90.9 trnI-CAU-trnH-GUG_p2 trnI-CAU-trnH-GUG 2 CAACGGGACCCTCCAATAAG GAAGAGTTCGACCCAATGCT 20 20 55.0 50.0 58.0 57.9 9.4 0.0 0.138992 155794 155913 288-470 1.000000 90.9 trnI-CAU-trnH-GUG_p3 trnI-CAU-trnH-GUG 3 AACGGGACCCTCCAATAAGT AGAAGAGTTCGACCCAATGC 20 20 50.0 50.0 58.3 57.9 9.4 0.0 0.435467 155794 155913 288-470 1.000000 88.5 trnI-CAU-trnH-GUG_p4 trnI-CAU-trnH-GUG 4 AACGGGACCCTCCAATAAGT GAAGAGTTCGACCCAATGCT 20 20 50.0 50.0 58.3 57.9 9.4 0.0 0.435467 155794 155913 287-469 1.000000 88.5 trnI-CAU-trnH-GUG_p5 trnI-CAU-trnH-GUG 5 CAACGGGACCCTCCAATAAG CCAAAGAAGAGTTCGACCCA 20 20 55.0 50.0 58.0 57.5 9.4 0.0 0.582164 155794 155913 293-475 1.000000 87.3