Hotspot

psbA

LSC · 286-1347 · 1062 bp

Back to Poikilospermum

Pi 0

MarkerSeek score 29.30

Primer available yes

Label psbA

Feature Metadata

label_name: psbA
feature_type: gene
region: LSC
length_bp: 1062
variable_sites: 0
pi: 0
unique_haplotype_count: 1
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 29.30

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
psbA_p1	TGCTCCTTTATTTTCAAAAAGTCGT	ATTCATGTGCTTGGGAGTCC	32.0	50.0	58.2	57.9	1160 bp	1.0	40.0
psbA_p2	TGCTCCTTTATTTTCAAAAAGTCG	ATTCATGTGCTTGGGAGTCC	33.3	50.0	56.7	57.9	1160 bp	1.0	40.0
psbA_p3	GCTCCTTTATTTTCAAAAAGTCGT	ATTCATGTGCTTGGGAGTCC	33.3	50.0	56.7	57.9	1159 bp	1.0	40.0
psbA_p4	TTGCTCCTTTATTTTCAAAAAGTCG	ATTCATGTGCTTGGGAGTCC	32.0	50.0	57.3	57.9	1161 bp	1.0	40.0
psbA_p5	GCTCCTTTATTTTCAAAAAGTCG	ATTCATGTGCTTGGGAGTCC	34.8	50.0	55.1	57.9	1159 bp	1.0	40.0