primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score trnH-GUG-psbA_p1 trnH-GUG-psbA 1 GATCCACTTGGCTACATCCG TCAGTGCTATGCATGGTTCC 20 20 55.0 50.0 58.1 58.0 0.0 10.2 0.171606 84 350 717-749 1.000000 82.1 trnH-GUG-psbA_p2 trnH-GUG-psbA 2 GATCCACTTGGCTACATCCG CAGTGCTATGCATGGTTCCT 20 20 55.0 50.0 58.1 58.0 0.0 10.2 0.177364 84 350 716-748 1.000000 82.1 trnH-GUG-psbA_p3 trnH-GUG-psbA 3 CAATCCACTGCCTTGATCCA TCAGTGCTATGCATGGTTCC 20 20 50.0 50.0 57.9 58.0 0.0 10.2 0.175967 84 350 731-763 1.000000 82.0 trnH-GUG-psbA_p4 trnH-GUG-psbA 4 AATCCACTGCCTTGATCCAC TCAGTGCTATGCATGGTTCC 20 20 50.0 50.0 57.9 58.0 0.0 10.2 0.177475 84 350 730-762 1.000000 82.0 trnH-GUG-psbA_p5 trnH-GUG-psbA 5 ACAATCCACTGCCTTGATCC TCAGTGCTATGCATGGTTCC 20 20 50.0 50.0 57.9 58.0 0.0 10.2 0.177475 84 350 732-764 1.000000 82.0 rps16-trnQ-UUG_p1 rps16-trnQ-UUG 1 AAGTCGCACGTTGCTTTCTA GAGGTTCGAATCCTTCCGTC 20 20 45.0 55.0 58.1 58.1 8.1 16.9 0.215425 5884 6937 1006-1127 1.000000 85.0 rps16-trnQ-UUG_p2 rps16-trnQ-UUG 2 AAGTCGCACGTTGCTTTCTA TTCGGAGGTTCGAATCCTTC 20 20 45.0 50.0 58.1 57.3 8.1 16.9 0.806797 5884 6937 1010-1131 1.000000 80.2 rps16-trnQ-UUG_p3 rps16-trnQ-UUG 3 TATCCTTCAAGTCGCACGTT GAGGTTCGAATCCTTCCGTC 20 20 45.0 55.0 57.3 58.1 0.0 16.9 0.812245 5884 6937 1014-1135 1.000000 80.2 rps16-trnQ-UUG_p4 rps16-trnQ-UUG 4 AAGTCGCACGTTGCTTTCTA TAAGGCAACGGGTTTTGGTC 20 20 45.0 50.0 58.1 58.7 8.1 0.0 0.818817 5884 6937 1036-1157 1.000000 80.1 rps16-trnQ-UUG_p5 rps16-trnQ-UUG 5 CGTTGCTTTCTACCACATCG GAGGTTCGAATCCTTCCGTC 20 20 50.0 55.0 57.2 58.1 0.0 16.9 0.863824 5884 6937 998-1119 1.000000 79.8 atpA-atpF_p1 atpA-atpF 1 CCTACTTGAAGTACGGTGCC TGCAAGGAGCTCTAGGAACT 20 20 55.0 50.0 58.0 58.1 0.0 14.6 0.061793 11801 11894 311-318 1.000000 80.3 atpA-atpF_p2 atpA-atpF 2 GTCGCCTACTTGAAGTACGG TGCAAGGAGCTCTAGGAACT 20 20 55.0 50.0 58.1 58.1 13.2 14.6 0.150373 11801 11894 315-322 1.000000 79.6 atpA-atpF_p3 atpA-atpF 3 CCGTCGCCTACTTGAAGTAC TGCAAGGAGCTCTAGGAACT 20 20 55.0 50.0 58.1 58.1 0.0 14.6 0.150373 11801 11894 317-324 1.000000 79.5 atpA-atpF_p4 atpA-atpF 4 CCTACTTGAAGTACGGTGCC TTGGGGGCGATGAAAGAAAT 20 20 55.0 45.0 58.0 57.8 0.0 0.0 0.236100 11801 11894 231-238 1.000000 79.1 atpA-atpF_p5 atpA-atpF 5 CGTCGGCTCGAATAGTTACC TGCAAGGAGCTCTAGGAACT 20 20 55.0 50.0 58.2 58.1 0.0 14.6 0.304271 11801 11894 226-233 1.000000 78.6 trnY-GUA-trnE-UUC_p1 trnY-GUA-trnE-UUC 1 CGAATTTACAGTCCGTCCCC CATAGTATGAGGGCGGTTGG 20 20 55.0 55.0 58.4 57.8 0.0 3.9 0.521328 30414 30490 221-221 1.000000 77.3 trnY-GUA-trnE-UUC_p2 trnY-GUA-trnE-UUC 2 ACGAATTTACAGTCCGTCCC CATAGTATGAGGGCGGTTGG 20 20 50.0 55.0 57.6 57.8 0.0 3.9 0.545005 30414 30490 222-222 1.000000 77.1 trnY-GUA-trnE-UUC_p3 trnY-GUA-trnE-UUC 3 CGAATTTACAGTCCGTCCCC ATAGTATGAGGGCGGTTGGT 20 20 55.0 50.0 58.4 58.2 0.0 0.0 0.548943 30414 30490 220-220 1.000000 77.1 trnY-GUA-trnE-UUC_p4 trnY-GUA-trnE-UUC 4 CGAATTTACAGTCCGTCCCC CTCTCTTTCAAGGAGGCAGC 20 20 55.0 55.0 58.4 58.3 0.0 0.0 0.614884 30414 30490 165-165 1.000000 77.0 trnY-GUA-trnE-UUC_p5 trnY-GUA-trnE-UUC 5 ACGAATTTACAGTCCGTCCC ATAGTATGAGGGCGGTTGGT 20 20 50.0 50.0 57.6 58.2 0.0 0.0 0.572620 30414 30490 221-221 1.000000 76.9 psbZ-trnG-GCC_p1 psbZ-trnG-GCC 1 TGTGATACCAAGGAGAACTGT ATGCTAGTTCTTGCTCCAGC 21 20 42.9 50.0 56.3 58.0 0.0 7.6 2.744341 37179 37978 988-988 0.500000 38.0 psbZ-trnG-GCC_p2 psbZ-trnG-GCC 2 TGTGATACCAAGGAGAACTGT TAGTACGTCGTCCTTCCCTG 21 20 42.9 55.0 56.3 58.3 0.0 0.0 2.966050 37179 37978 1021-1021 0.500000 36.3 psbZ-trnG-GCC_p3 psbZ-trnG-GCC 3 TGTGATACCAAGGAGAACTGT GTCGTCCTTCCCTGAAATGG 21 20 42.9 55.0 56.3 58.3 0.0 0.0 2.969744 37179 37978 1015-1015 0.500000 36.2 psbZ-trnG-GCC_p4 psbZ-trnG-GCC 4 ACTGTAGAAAGTAAAGGGTGCT ATGCTAGTTCTTGCTCCAGC 22 20 40.9 50.0 57.0 58.0 0.0 7.6 3.012070 37179 37978 972-972 0.500000 35.9 psbZ-trnG-GCC_p5 psbZ-trnG-GCC 5 TGTGATACCAAGGAGAACTGT TCGTCCTTCCCTGAAATGGA 21 20 42.9 50.0 56.3 58.3 0.0 0.0 3.057074 37179 37978 1014-1014 0.500000 35.5 psaA-pafI_p1 psaA-pafI 1 GCCCATTCCTCGAAAGAAGT ATTGGTTGAAGATCACGGGG 20 20 50.0 50.0 57.9 57.9 4.1 0.0 0.244113 46126 46955 911-942 1.000000 83.7 psaA-pafI_p2 psaA-pafI 2 GAAAAATGACCCGGTTTGGC ATTGGTTGAAGATCACGGGG 20 20 50.0 50.0 58.2 57.9 0.0 0.0 0.338015 46126 46955 929-960 1.000000 82.8 psaA-pafI_p3 psaA-pafI 3 GCCCATTCCTCGAAAGAAGT TGGTTTGATCAAGCTGCTGA 20 20 50.0 45.0 57.9 57.7 4.1 19.9 0.390477 46126 46955 984-1015 1.000000 82.1 psaA-pafI_p4 psaA-pafI 4 GAAAAATGACCCGGTTTGGC TGGTTTGATCAAGCTGCTGA 20 20 50.0 45.0 58.2 57.7 0.0 19.9 0.484379 46126 46955 1002-1033 1.000000 81.2 psaA-pafI_p5 psaA-pafI 5 GCCCATTCCTCGAAAGAAGT CGGAGGCTTGGTTTGATCAA 20 20 50.0 50.0 57.9 58.5 4.1 3.4 0.581718 46126 46955 992-1023 1.000000 80.5 trnW-CCA-trnP-UGG_p1 trnW-CCA-trnP-UGG 1 GTTTTGGAGACCCACGTTCT GGGTACAAAATGTCACGGGT 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.136582 71145 71311 247-248 1.000000 81.2 trnW-CCA-trnP-UGG_p2 trnW-CCA-trnP-UGG 2 GTTTTGGAGACCCACGTTCT TGGGTACAAAATGTCACGGG 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.137926 71145 71311 248-249 1.000000 81.2 trnW-CCA-trnP-UGG_p3 trnW-CCA-trnP-UGG 3 GTTTTGGAGACCCACGTTCT GTCACGGGTTCAAATCCTGT 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.144618 71145 71311 236-237 1.000000 81.2 trnW-CCA-trnP-UGG_p4 trnW-CCA-trnP-UGG 4 GTTTTGGAGACCCACGTTCT CACGGGTTCAAATCCTGTCA 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.145952 71145 71311 234-235 1.000000 81.2 trnW-CCA-trnP-UGG_p5 trnW-CCA-trnP-UGG 5 GTTTTGGAGACCCACGTTCT TGTCACGGGTTCAAATCCTG 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.145952 71145 71311 237-238 1.000000 81.2 psbT-pbf1_p1 psbT-pbf1 1 CGAGAACCACCTAAAGTTCCA GGGTACGCCTTATATACCGC 21 20 47.6 55.0 57.6 57.7 0.0 0.0 1.680523 78691 78755 173-173 1.000000 69.3 psbT-pbf1_p2 psbT-pbf1 2 CGAGAACCACCTAAAGTTCCA GATCCATTCGAGGAACACGG 21 20 47.6 55.0 57.6 58.4 0.0 0.0 1.824342 78691 78755 125-125 1.000000 69.2 psbT-pbf1_p3 psbT-pbf1 3 CGAGAACCACCTAAAGTTCCA GTTTTACCGGGTACGCCTTA 21 20 47.6 50.0 57.6 57.6 0.0 6.3 1.774705 78691 78755 181-181 1.000000 68.5 psbT-pbf1_p4 psbT-pbf1 4 CGAGAACCACCTAAAGTTCCA TAAGTTTTACCGGGTACGCC 21 20 47.6 50.0 57.6 57.6 0.0 6.3 1.774705 78691 78755 184-184 1.000000 68.4 psbT-pbf1_p5 psbT-pbf1 5 CGAGAACCACCTAAAGTTCCA CGGGTACGCCTTATATACCG 21 20 47.6 55.0 57.6 57.5 0.0 4.1 1.945894 78691 78755 174-174 1.000000 67.2 rpl36-infA_p1 rpl36-infA 1 AATTACTCTAATGCGCCCCC TCGACTCCGAAACAAGGATT 20 20 50.0 45.0 57.7 56.9 4.2 0.0 1.393918 84007 84101 204-204 1.000000 70.8 rpl36-infA_p2 rpl36-infA 2 AATTACTCTAATGCGCCCCC TCGACTCCGAAACAAGGATTT 20 21 50.0 42.9 57.7 57.6 4.2 0.0 1.668204 84007 84101 204-204 1.000000 68.6 rpl36-infA_p3 rpl36-infA 3 AATTACTCTAATGCGCCCCC CGACTCCGAAACAAGGATTTG 20 21 50.0 47.6 57.7 57.5 4.2 0.0 1.727563 84007 84101 203-203 1.000000 68.1 rpl36-infA_p4 rpl36-infA 4 AATTACTCTAATGCGCCCCC ATGATTCAACCAGAGGACGT 20 20 50.0 45.0 57.7 56.5 4.2 0.0 1.724798 84007 84101 232-232 1.000000 67.9 rpl36-infA_p5 rpl36-infA 5 AATTACTCTAATGCGCCCCC CGACTCCGAAACAAGGATTT 20 20 50.0 45.0 57.7 56.1 4.2 0.0 2.194063 84007 84101 203-203 1.000000 64.4 infA-rps8_p1 infA-rps8 1 CCATTGGGAAGCGATTCAGT TCGGCGGAGAAATTTTATGT 20 20 50.0 40.0 58.2 55.4 16.2 7.2 2.796913 84336 84460 213-213 1.000000 61.0 infA-rps8_p2 infA-rps8 2 CCATTGGGAAGCGATTCAGT TCGGCGGAGAAATTTTATGTT 20 21 50.0 38.1 58.2 56.2 16.2 7.2 3.004917 84336 84460 213-213 1.000000 59.3 infA-rps8_p3 infA-rps8 3 CCATTGGGAAGCGATTCAGT ATCGGCGGAGAAATTTTATGT 20 21 50.0 38.1 58.2 56.0 16.2 7.2 3.225251 84336 84460 214-214 1.000000 57.6 infA-rps8_p4 infA-rps8 4 TAAACGAACCCGGAACATGC TCGGCGGAGAAATTTTATGT 20 20 50.0 40.0 58.8 55.4 0.7 7.2 3.393659 84336 84460 232-232 1.000000 56.0 infA-rps8_p5 infA-rps8 5 CCATTGGGAAGCGATTCAGT GAATCGGCGGAGAAATTTTATGT 20 23 50.0 39.1 58.2 57.8 16.2 7.2 3.414657 84336 84460 216-216 1.000000 56.0 rpl16_p1 rpl16 1 CATATCGGCGATTGCTAGCT CGACGGAAAAGAAATTGCCC 20 20 50.0 50.0 58.0 58.0 28.9 0.0 0.024624 85526 86802 1802-1810 1.000000 82.3 rpl16_p2 rpl16 2 CATATCGGCGATTGCTAGCT GACGGAAAAGAAATTGCCCG 20 20 50.0 50.0 58.0 58.0 28.9 0.0 0.024624 85526 86802 1801-1809 1.000000 82.3 rpl16_p3 rpl16 3 AGCATATCGGCGATTGCTAG CGACGGAAAAGAAATTGCCC 20 20 50.0 50.0 58.0 58.0 35.6 0.0 0.024624 85526 86802 1804-1804 0.500000 59.8 rpl16_p4 rpl16 4 AGCATATCGGCGATTGCTAG GACGGAAAAGAAATTGCCCG 20 20 50.0 50.0 58.0 58.0 35.6 0.0 0.024624 85526 86802 1803-1803 0.500000 59.8 rpl16_p5 rpl16 5 GAGCATATCGGCGATTGCTA GACGGAAAAGAAATTGCCCG 20 20 50.0 50.0 58.0 58.0 36.0 0.0 0.026520 85526 86802 1804-1804 0.500000 59.8 rpl32-trnL-UAG_p1 rpl32-trnL-UAG 1 TCTCTTTCTACCGGGATTTCA TCCTAAGAGCAGCGTGTCTA 21 20 42.9 50.0 56.1 57.9 6.3 0.0 3.037505 116912 117670 855-858 1.000000 60.5 rpl32-trnL-UAG_p2 rpl32-trnL-UAG 2 TCTCTTTCTACCGGGATTTCA AGCAGCGTGTCTACCAATTT 21 20 42.9 45.0 56.1 57.8 6.3 0.0 3.098232 116912 117670 848-851 1.000000 60.0 rpl32-trnL-UAG_p3 rpl32-trnL-UAG 3 TCTCTTTCTACCGGGATTTCA CCTAAGAGCAGCGTGTCTAC 21 20 42.9 55.0 56.1 57.8 6.3 0.0 3.109523 116912 117670 854-857 1.000000 59.9 rpl32-trnL-UAG_p4 rpl32-trnL-UAG 4 TCTCTTTCTACCGGGATTTCA CTAAGAGCAGCGTGTCTACC 21 20 42.9 55.0 56.1 57.8 6.3 0.0 3.109523 116912 117670 853-856 1.000000 59.9 rpl32-trnL-UAG_p5 rpl32-trnL-UAG 5 TCTCTTTCTACCGGGATTTCA GAGCAGCGTGTCTACCAATT 21 20 42.9 50.0 56.1 58.3 6.3 0.0 3.186375 116912 117670 849-852 1.000000 59.3 ccsA-ndhD_p1 ccsA-ndhD 1 CTAATGAAGCATGGGGGTCC TCAGTAGCTTTTCGATGGCC 20 20 55.0 50.0 58.0 58.0 0.0 0.0 0.037293 118807 119035 830-831 1.000000 83.5 ccsA-ndhD_p2 ccsA-ndhD 2 GAAGCATGGGGGTCCTATTG TCAGTAGCTTTTCGATGGCC 20 20 55.0 50.0 58.0 58.0 0.0 0.0 0.037293 118807 119035 825-826 1.000000 83.5 ccsA-ndhD_p3 ccsA-ndhD 3 CTAATGAAGCATGGGGGTCC CAGTAGCTTTTCGATGGCCT 20 20 55.0 50.0 58.0 58.0 0.0 3.3 0.042956 118807 119035 829-830 1.000000 83.4 ccsA-ndhD_p4 ccsA-ndhD 4 GAAGCATGGGGGTCCTATTG CAGTAGCTTTTCGATGGCCT 20 20 55.0 50.0 58.0 58.0 0.0 3.3 0.042956 118807 119035 824-825 1.000000 83.4 ccsA-ndhD_p5 ccsA-ndhD 5 GAAGCATGGGGGTCCTATTG GGTTGATAATAGTGGGCGCA 20 20 55.0 50.0 58.0 58.0 0.0 10.8 0.051324 118807 119035 1122-1123 1.000000 82.9 ndhD_p1 ndhD 1 CTAATGAAGCATGGGGGTCC ACTGCGTTGGTTGTAAGAGG 20 20 55.0 50.0 58.0 58.1 0.0 0.0 0.134165 119036 120346 2186-2187 1.000000 81.2 ndhD_p2 ndhD 2 CTAATGAAGCATGGGGGTCC CTGCGTTGGTTGTAAGAGGT 20 20 55.0 50.0 58.0 58.1 0.0 0.0 0.134165 119036 120346 2185-2186 1.000000 81.2 ndhD_p3 ndhD 3 GAAGCATGGGGGTCCTATTG ACTGCGTTGGTTGTAAGAGG 20 20 55.0 50.0 58.0 58.1 0.0 0.0 0.134165 119036 120346 2181-2182 1.000000 81.2 ndhD_p4 ndhD 4 GAAGCATGGGGGTCCTATTG CTGCGTTGGTTGTAAGAGGT 20 20 55.0 50.0 58.0 58.1 0.0 0.0 0.134165 119036 120346 2180-2181 1.000000 81.2 ndhD_p5 ndhD 5 GAAGCATGGGGGTCCTATTG GTGCCCCACCGATGTATTAG 20 20 55.0 55.0 58.0 58.1 0.0 0.0 0.134165 119036 120346 2261-2262 1.000000 81.2 ndhG-ndhI_p1 ndhG-ndhI 1 AATCCCAATGAAAAGGCCGA CATGATTACCCTGTCCCACG 20 20 45.0 55.0 57.8 58.0 0.0 0.0 0.276571 122196 122563 914-920 1.000000 80.5 ndhG-ndhI_p2 ndhG-ndhI 2 ATCCCAATGAAAAGGCCGAA CATGATTACCCTGTCCCACG 20 20 45.0 55.0 57.8 58.0 0.0 0.0 0.276571 122196 122563 913-919 1.000000 80.5 ndhG-ndhI_p3 ndhG-ndhI 3 TCCCAATGAAAAGGCCGAAT CATGATTACCCTGTCCCACG 20 20 45.0 55.0 57.8 58.0 0.0 0.0 0.276571 122196 122563 912-918 1.000000 80.5 ndhG-ndhI_p4 ndhG-ndhI 4 ATCCCAATGAAAAGGCCGAA ACATCAGAACGTTTCCGAGG 20 20 45.0 50.0 57.8 57.9 0.0 0.5 0.310416 122196 122563 846-852 1.000000 80.4 ndhG-ndhI_p5 ndhG-ndhI 5 TCCCAATGAAAAGGCCGAAT ACATCAGAACGTTTCCGAGG 20 20 45.0 50.0 57.8 57.9 0.0 0.5 0.310416 122196 122563 845-851 1.000000 80.4 rps15-ycf1_p1 rps15-ycf1 1 AGTCGTTGACGTTTTCCCAA AAAAACAGCAGCCGAGTTTC 20 20 45.0 45.0 58.0 57.5 3.2 8.2 0.519023 126832 127252 813-813 0.500000 55.8 rps15-ycf1_p2 rps15-ycf1 2 CCCGAGTTAGTCTTCCATGC AAAAACAGCAGCCGAGTTTC 20 20 55.0 45.0 58.1 57.5 0.0 8.2 0.550694 126832 127252 1004-1004 0.500000 55.6 rps15-ycf1_p3 rps15-ycf1 3 ATATTGCCCAGCTGTTCAGG AAAAACAGCAGCCGAGTTTC 20 20 50.0 45.0 57.9 57.5 13.8 8.2 0.554990 126832 127252 1287-1287 0.500000 55.6 rps15-ycf1_p4 rps15-ycf1 4 CCAGCTGTTCAGGTCCATTT AAAAACAGCAGCCGAGTTTC 20 20 50.0 45.0 58.1 57.5 13.8 8.2 0.576878 126832 127252 1280-1280 0.500000 55.4 rps15-ycf1_p5 rps15-ycf1 5 CTTCACCGTCGAGAGTAACG AAAAACAGCAGCCGAGTTTC 20 20 55.0 45.0 58.1 57.5 0.0 8.2 0.612373 126832 127252 1118-1118 0.500000 55.1 ycf1_p1 ycf1 1 GCCGAAAGTCTGATTGTTGC ATGGAATCGACCATTTCGCT 20 20 50.0 45.0 58.0 57.7 0.0 1.8 0.362960 130959 131078 1019-1019 1.000000 80.6 ycf1_p2 ycf1 2 AACCTTTGATTAGACCCCGC ATGGAATCGACCATTTCGCT 20 20 50.0 45.0 57.9 57.7 0.0 1.8 0.456340 130959 131078 1037-1037 1.000000 79.9 ycf1_p3 ycf1 3 AATCCTCAGTCCATTCGGGA ATGGAATCGACCATTTCGCT 20 20 50.0 45.0 58.1 57.7 0.0 1.8 0.452488 130959 131078 1451-1451 1.000000 79.7 ycf1_p4 ycf1 4 GCGCATTTGCTTGAAGGAAT ATGGAATCGACCATTTCGCT 20 20 45.0 45.0 58.0 57.7 0.3 1.8 0.332492 130959 131078 1094-1094 0.500000 57.3 ycf1_p5 ycf1 5 CGGGAAGTTGGAATAGGAGC ATGGAATCGACCATTTCGCT 20 20 55.0 45.0 58.0 57.7 0.0 1.8 0.377136 130959 131078 1436-1436 0.500000 57.0