feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 11 83 -1 73 LSC 0.000000 0 0 300 22 no 0.000000 1 0.000000 0.000000 1.000000 20.400000 IGS_001 igs trnH|psbA trnH-psbA 84 357 0 274 LSC 0.041758 23 10 300 300 yes 1.000000 5 1.000000 0.042602 0.996350 85.900000 psbA gene psbA psbA 358 1419 -1 1062 LSC 0.001883 5 0 2 134 no 0.400000 3 0.666667 0.001883 1.000000 34.100000 IGS_002 igs psbA|trnK psbA-trnK 1420 1694 0 275 LSC 0.008000 5 6 212 63 no 0.600000 4 0.750000 0.008158 0.981818 42.700000 trnK_part2 tRNA trnK trnK 1695 1729 -1 35 LSC 0.000000 0 0 36 28 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 matK gene matK matK 2033 3613 -1 1581 LSC 0.008982 27 0 13 31 no 1.000000 5 1.000000 0.008982 1.000000 50.700000 IGS_005 igs matK|trnK matK-trnK 3614 4291 0 678 LSC 0.006195 8 12 51 62 no 0.600000 4 0.750000 0.006258 0.997050 46.300000 trnK_part1 tRNA trnK trnK 4292 4328 -1 37 LSC 0.000000 0 0 12 25 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_006 igs trnK|rps16 trnK-rps16 4329 4994 0 666 LSC 0.021421 29 35 49 42 yes 1.000000 5 1.000000 0.021701 0.971471 67.000000 rps16 gene rps16 rps16 4995 6148 -1 1154 LSC 0.011583 27 17 62 53 yes 1.000000 5 1.000000 0.011262 1.000000 57.600000 IGS_007 igs rps16|trnQ rps16-trnQ 6149 6568 0 420 LSC 0.022778 18 53 90 137 yes 1.000000 5 1.000000 0.018510 1.000000 67.800000 trnQ tRNA trnQ trnQ 6569 6640 -1 72 LSC 0.000000 0 0 32 65 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_008 igs trnQ|psbK trnQ-psbK 6641 6969 0 329 LSC 0.010334 8 0 104 14 no 1.000000 5 1.000000 0.010334 1.000000 46.800000 psbK gene psbK psbK 6970 7155 1 186 LSC 0.015054 5 0 2 52 no 0.200000 3 0.333333 0.015054 1.000000 32.800000 IGS_009 igs psbK|psbI psbK-psbI 7156 7541 0 386 LSC 0.008117 6 213 71 53 no 1.000000 5 1.000000 0.009287 1.000000 51.700000 psbI gene psbI psbI 7542 7652 1 111 LSC 0.005405 1 0 7 23 no 0.000000 2 0.000000 0.005405 1.000000 22.800000 IGS_010 igs psbI|trnS psbI-trnS 7653 7743 0 91 LSC 0.008791 2 0 57 97 no 0.200000 2 0.500000 0.008791 1.000000 33.500000 trnS tRNA trnS trnS 7744 7831 1 88 LSC 0.000000 0 0 62 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_011 igs trnS|trnG trnS-trnG 7832 8486 0 655 LSC 0.014046 17 7 150 41 no 0.600000 4 0.750000 0.014198 0.989313 49.900000 trnG_part1 tRNA trnG trnG 8487 8509 1 23 LSC 0.000000 0 0 83 18 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 trnG_part2 tRNA trnG trnG 9229 9277 1 49 LSC 0.000000 0 0 101 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_014 igs trnG|trnR trnG-trnR 9278 9430 0 153 LSC 0.022658 7 6 150 83 yes 1.000000 5 1.000000 0.021522 0.980392 63.800000 trnR tRNA trnR trnR 9431 9502 1 72 LSC 0.000000 0 0 24 11 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_015 igs trnR|atpA trnR-atpA 9503 9789 0 287 LSC 0.016376 9 15 96 19 no 1.000000 5 1.000000 0.017029 0.972125 55.400000 atpA gene atpA atpA 9790 11313 -1 1524 LSC 0.002493 7 0 5 36 no 0.200000 3 0.333333 0.002493 1.000000 30.800000 IGS_016 igs atpA|atpF atpA-atpF 11314 11378 0 65 LSC 0.015385 2 0 194 300 no 0.200000 3 0.333333 0.015385 1.000000 47.800000 atpF gene atpF atpF 11379 12662 -1 1284 LSC 0.001869 5 18 12 78 no 0.600000 4 0.750000 0.001895 0.986760 39.800000 IGS_017 igs atpF|atpH atpF-atpH 12663 13126 0 464 LSC 0.009914 8 2 300 300 no 0.600000 4 0.750000 0.009944 0.997845 55.500000 atpH gene atpH atpH 13127 13372 -1 246 LSC 0.000000 0 0 41 123 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_018 igs atpH|atpI atpH-atpI 13373 13876 0 504 LSC 0.017460 16 3 287 300 yes 1.000000 5 1.000000 0.017533 0.998016 69.200000 atpI gene atpI atpI 13877 14626 -1 750 LSC 0.001867 3 0 21 98 no 0.200000 3 0.333333 0.001867 1.000000 31.700000 IGS_019 igs atpI|rps2 atpI-rps2 14627 14870 0 244 LSC 0.008197 4 1 184 170 no 1.000000 5 1.000000 0.008229 0.995902 56.400000 rps2 gene rps2 rps2 14871 15581 -1 711 LSC 0.002532 4 0 22 3 no 0.600000 4 0.750000 0.002532 1.000000 38.300000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 15582 15798 0 217 LSC 0.014747 6 2 29 72 no 0.600000 4 0.750000 0.014824 1.000000 43.300000 rpoC2 gene rpoC2 rpoC2 15799 19938 -1 4140 LSC 0.005411 42 6 33 232 no 1.000000 5 1.000000 0.005414 1.000000 45.200000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 19939 20120 0 182 LSC 0.000000 0 1 206 50 no 0.000000 2 0.000000 0.000000 0.994505 23.000000 rpoC1 gene rpoC1 rpoC1 20121 22959 -1 2839 LSC 0.001926 11 9 300 300 no 0.600000 4 0.750000 0.001765 1.000000 50.200000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 22960 22985 0 26 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpoB gene rpoB rpoB 22986 26204 -1 3219 LSC 0.001802 13 0 300 226 no 1.000000 5 1.000000 0.001802 1.000000 56.600000 IGS_023 igs rpoB|trnC rpoB-trnC 26205 27323 0 1119 LSC 0.013405 28 20 48 79 yes 1.000000 5 1.000000 0.013596 0.988382 58.300000 trnC tRNA trnC trnC 27324 27394 1 71 LSC 0.000000 0 0 45 8 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_024 igs trnC|petN trnC-petN 27395 27682 0 288 LSC 0.007801 4 6 116 300 no 0.600000 4 0.750000 0.007801 0.979167 45.800000 petN gene petN petN 27683 27772 1 90 LSC 0.000000 0 0 209 225 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_025 igs petN|psbM petN-psbM 27773 28320 0 548 LSC 0.008212 9 16 299 3 no 0.600000 4 0.750000 0.007988 1.000000 44.600000 psbM gene psbM psbM 28321 28425 -1 105 LSC 0.005714 1 0 8 19 no 0.000000 2 0.000000 0.005714 1.000000 23.100000 IGS_026 igs psbM|trnD psbM-trnD 28426 29423 0 998 LSC 0.013226 26 15 101 130 yes 1.000000 5 1.000000 0.013410 0.989980 62.000000 trnD tRNA trnD trnD 29424 29495 -1 72 LSC 0.000000 0 0 29 58 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_027 igs trnD|trnY trnD-trnY 29496 29930 0 435 LSC 0.015172 13 3 101 130 no 0.600000 4 0.750000 0.015247 0.997701 51.700000 trnY tRNA trnY trnY 29931 30014 -1 84 LSC 0.000000 0 0 22 46 no 0.000000 1 0.000000 0.000000 1.000000 20.400000 IGS_028 igs trnY|trnE trnY-trnE 30015 30073 0 59 LSC 0.006780 1 0 106 123 no 0.200000 2 0.500000 0.006780 1.000000 35.600000 trnE tRNA trnE trnE 30074 30146 -1 73 LSC 0.000000 0 0 12 50 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_029 igs trnE|trnT trnE-trnT 30147 30963 0 817 LSC 0.012077 19 9 85 116 yes 1.000000 5 1.000000 0.011808 1.000000 59.800000 trnT tRNA trnT trnT 30964 31035 1 72 LSC 0.000000 0 0 1 44 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_030 igs trnT|psbD trnT-psbD 31036 32173 0 1138 LSC 0.009256 19 32 73 212 yes 1.000000 5 1.000000 0.008775 1.000000 58.700000 psbD gene psbD psbD 32174 33235 1 1062 LSC 0.001507 3 0 76 39 no 0.200000 3 0.333333 0.001507 1.000000 32.700000 psbC gene psbC psbC 33183 34604 1 1422 LSC 0.001406 4 0 300 23 no 0.200000 3 0.333333 0.001406 1.000000 31.500000 IGS_032 igs psbC|trnS psbC-trnS 34605 34779 0 175 LSC 0.014286 5 8 300 115 yes 1.000000 5 1.000000 0.013307 1.000000 61.600000 trnS tRNA trnS trnS 34780 34871 1 92 LSC 0.000000 0 0 10 23 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_033 igs trnS|psbZ trnS-psbZ 34872 35217 0 346 LSC 0.008671 6 0 102 300 no 0.600000 4 0.750000 0.008671 1.000000 44.700000 psbZ gene psbZ psbZ 35218 35406 1 189 LSC 0.000000 0 0 0 152 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_034 igs psbZ|trnG psbZ-trnG 35407 35887 0 481 LSC 0.018850 18 37 189 200 yes 0.600000 4 0.750000 0.018933 0.995842 66.800000 IGS_035 igs trnG|trnfM trnG-trnfM 35959 36102 0 144 LSC 0.002778 1 1 131 300 no 0.200000 3 0.333333 0.002797 0.993056 35.100000 trnfM tRNA trnfM trnfM 36103 36176 -1 74 LSC 0.000000 0 0 14 300 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_036 igs trnfM|rps14 trnfM-rps14 36177 36336 0 160 LSC 0.000000 0 1 88 176 no 0.000000 2 0.000000 0.000000 1.000000 26.100000 rps14 gene rps14 rps14 36337 36639 -1 303 LSC 0.002640 2 0 248 178 no 0.200000 2 0.500000 0.002640 1.000000 37.900000 IGS_037 igs rps14|psaB rps14-psaB 36640 36772 0 133 LSC 0.000000 0 0 16 45 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 psaB gene psaB psaB 36773 38977 -1 2205 LSC 0.001179 5 0 149 300 no 0.600000 4 0.750000 0.001179 1.000000 46.800000 IGS_038 igs psaB|psaA psaB-psaA 38978 39002 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 39003 41255 -1 2253 LSC 0.000444 2 0 300 91 no 0.200000 3 0.333333 0.000444 1.000000 34.300000 IGS_039 igs psaA|ycf3 psaA-ycf3 41256 41972 0 717 LSC 0.008926 12 3 209 257 no 0.600000 4 0.750000 0.008960 0.997211 57.800000 ycf3 gene ycf3 ycf3 41973 43976 -1 2004 LSC 0.001796 7 8 14 114 no 0.600000 4 0.750000 0.001800 0.999501 38.000000 IGS_040 igs ycf3|trnS ycf3-trnS 43977 44212 0 236 LSC 0.001695 1 4 153 156 no 0.200000 3 0.333333 0.001710 1.000000 37.200000 trnS tRNA trnS trnS 44213 44299 1 87 LSC 0.000000 0 0 121 69 no 0.000000 1 0.000000 0.000000 1.000000 23.900000 IGS_041 igs trnS|rps4 trnS-rps4 44300 44616 0 317 LSC 0.008202 6 3 208 53 no 1.000000 5 1.000000 0.008248 0.996845 48.900000 rps4 gene rps4 rps4 44617 45222 -1 606 LSC 0.002640 3 0 80 139 no 0.600000 4 0.750000 0.002640 1.000000 44.100000 IGS_042 igs rps4|trnT rps4-trnT 45223 45608 0 386 LSC 0.008290 7 1 59 300 no 0.200000 3 0.333333 0.008304 1.000000 35.000000 trnT tRNA trnT trnT 45609 45681 -1 73 LSC 0.000000 0 0 33 227 no 0.000000 1 0.000000 0.000000 1.000000 21.200000 IGS_043 igs trnT|trnL trnT-trnL 45682 46445 0 764 LSC 0.017801 24 21 106 133 yes 1.000000 5 1.000000 0.015874 0.998691 66.900000 trnL_part1 tRNA trnL trnL 46446 46480 1 35 LSC 0.000000 0 0 11 98 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 trnL_part2 tRNA trnL trnL 46985 47034 1 50 LSC 0.012000 1 0 132 116 no 0.000000 2 0.000000 0.012000 1.000000 35.400000 IGS_046 igs trnL|trnF trnL-trnF 47035 47365 0 331 LSC 0.006042 5 7 32 117 no 0.600000 4 0.750000 0.006121 1.000000 40.000000 trnF tRNA trnF trnF 47366 47438 1 73 LSC 0.000000 0 0 5 44 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_047 igs trnF|ndhJ trnF-ndhJ 47439 48013 0 575 LSC 0.008464 9 155 78 196 no 0.600000 4 0.750000 0.009096 1.000000 51.900000 ndhJ gene ndhJ ndhJ 48014 48490 -1 477 LSC 0.002096 2 0 53 34 no 0.400000 3 0.666667 0.002096 1.000000 34.000000 IGS_048 igs ndhJ|ndhK ndhJ-ndhK 48491 48592 0 102 LSC 0.011765 2 0 271 103 no 0.200000 3 0.333333 0.011765 1.000000 38.000000 ndhK gene ndhK ndhK 48593 49270 -1 678 LSC 0.002360 3 0 28 23 no 0.200000 3 0.333333 0.002360 1.000000 32.100000 IGS_049 igs ndhK|ndhC ndhK-ndhC 49271 49336 0 66 LSC 0.062626 8 2 300 63 yes 0.600000 4 0.750000 0.052602 1.000000 73.200000 ndhC gene ndhC ndhC 49337 49699 -1 363 LSC 0.004408 3 0 33 30 no 0.200000 3 0.333333 0.004408 1.000000 29.100000 IGS_050 igs ndhC|trnV ndhC-trnV 49700 50541 0 842 LSC 0.014608 23 271 24 210 no 1.000000 5 1.000000 0.015813 1.000000 58.300000 trnV_part2 tRNA trnV trnV 50542 50576 -1 35 LSC 0.000000 0 0 35 175 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 trnV_part1 tRNA trnV trnV 51182 51220 -1 39 LSC 0.000000 0 0 29 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_053 igs trnV|trnM trnV-trnM 51221 51404 0 184 LSC 0.008696 3 0 68 147 no 0.200000 3 0.333333 0.008696 1.000000 33.600000 trnM tRNA trnM trnM 51405 51477 1 73 LSC 0.000000 0 0 22 74 no 0.000000 1 0.000000 0.000000 1.000000 20.400000 IGS_054 igs trnM|atpE trnM-atpE 51478 51618 0 141 LSC 0.002837 1 2 95 43 no 0.400000 3 0.666667 0.002878 1.000000 33.300000 atpE gene atpE atpE 51619 52017 -1 399 LSC 0.004010 3 0 66 300 no 0.200000 3 0.333333 0.004010 1.000000 32.300000 atpB gene atpB atpB 52014 53510 -1 1497 LSC 0.001870 6 0 274 17 no 0.600000 4 0.750000 0.001870 1.000000 38.900000 IGS_056 igs atpB|rbcL atpB-rbcL 53511 54311 0 801 LSC 0.014482 21 7 99 300 yes 1.000000 5 1.000000 0.014583 0.995006 61.900000 rbcL gene rbcL rbcL 54312 55751 1 1440 LSC 0.000278 1 3 254 67 no 0.200000 3 0.333333 0.000278 1.000000 34.200000 IGS_057 igs rbcL|accD rbcL-accD 55752 56420 0 669 LSC 0.008670 12 1 300 37 no 1.000000 5 1.000000 0.008675 1.000000 52.800000 accD gene accD accD 56421 57884 1 1464 LSC 0.006967 20 0 69 41 no 0.600000 4 0.750000 0.006967 1.000000 44.200000 IGS_058 igs accD|psaI accD-psaI 57885 58496 0 612 LSC 0.009493 12 3 10 231 no 1.000000 5 1.000000 0.009513 0.998366 51.700000 psaI gene psaI psaI 58497 58610 1 114 LSC 0.000000 0 0 64 117 no 0.000000 1 0.000000 0.000000 1.000000 23.500000 IGS_059 igs psaI|ycf4 psaI-ycf4 58611 59014 0 404 LSC 0.004950 4 0 178 122 no 0.600000 4 0.750000 0.004950 1.000000 44.800000 ycf4 gene ycf4 ycf4 59015 59569 1 555 LSC 0.002883 3 0 60 14 no 0.200000 3 0.333333 0.002883 1.000000 30.800000 IGS_060 igs ycf4|cemA ycf4-cemA 59570 59996 0 427 LSC 0.015222 12 2 136 165 no 0.600000 4 0.750000 0.015274 0.997658 53.700000 cemA gene cemA cemA 59997 60686 1 690 LSC 0.003478 5 0 101 125 no 0.600000 4 0.750000 0.003478 1.000000 46.300000 IGS_061 igs cemA|petA cemA-petA 60687 60908 0 222 LSC 0.001802 1 0 132 48 no 0.200000 2 0.500000 0.001802 1.000000 27.500000 petA gene petA petA 60909 61871 1 963 LSC 0.003946 8 0 96 47 no 0.600000 4 0.750000 0.003946 1.000000 42.600000 IGS_062 igs petA|psbJ petA-psbJ 61872 62848 0 977 LSC 0.013306 24 11 126 155 no 0.600000 4 0.750000 0.013429 0.997953 56.000000 psbJ gene psbJ psbJ 62849 62971 -1 123 LSC 0.000000 0 0 76 32 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_063 igs psbJ|psbL psbJ-psbL 62972 63114 0 143 LSC 0.005594 2 1 199 18 no 0.400000 3 0.666667 0.005619 1.000000 32.700000 psbL gene psbL psbL 63115 63231 -1 117 LSC 0.008547 2 0 41 300 no 0.200000 3 0.333333 0.008547 1.000000 31.600000 IGS_064 igs psbL|psbF psbL-psbF 63232 63252 0 21 LSC 0.000000 0 0 77 300 no 0.000000 1 0.000000 0.000000 1.000000 24.500000 psbF gene psbF psbF 63253 63372 -1 120 LSC 0.000000 0 0 98 300 no 0.000000 1 0.000000 0.000000 1.000000 26.100000 IGS_065 igs psbF|psbE psbF-psbE 63373 63381 0 9 LSC 0.000000 0 0 218 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbE gene psbE psbE 63382 63633 -1 252 LSC 0.000000 0 0 227 49 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_066 igs psbE|petL psbE-petL 63634 64911 0 1278 LSC 0.015310 37 26 300 129 yes 1.000000 5 1.000000 0.015168 0.998435 66.200000 petL gene petL petL 64912 65007 1 96 LSC 0.000000 0 0 69 33 no 0.000000 1 0.000000 0.000000 1.000000 21.200000 IGS_067 igs petL|petG petL-petG 65008 65190 0 183 LSC 0.016393 5 0 165 166 no 0.200000 3 0.333333 0.016393 1.000000 45.700000 petG gene petG petG 65191 65304 1 114 LSC 0.000000 0 0 71 52 no 0.000000 1 0.000000 0.000000 1.000000 22.700000 IGS_068 igs petG|trnW petG-trnW 65305 65433 0 129 LSC 0.017571 4 10 185 95 no 0.200000 3 0.333333 0.016025 1.000000 47.200000 trnW tRNA trnW trnW 65434 65507 -1 74 LSC 0.000000 0 0 33 21 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 IGS_069 igs trnW|trnP trnW-trnP 65508 65695 0 188 LSC 0.008511 3 11 107 128 no 0.600000 4 0.750000 0.008737 0.994681 49.600000 trnP tRNA trnP trnP 65696 65769 -1 74 LSC 0.000000 0 0 125 54 no 0.000000 1 0.000000 0.000000 1.000000 22.800000 IGS_070 igs trnP|psaJ trnP-psaJ 65770 66149 0 380 LSC 0.010526 8 17 199 27 no 0.600000 4 0.750000 0.010970 0.976316 45.600000 psaJ gene psaJ psaJ 66150 66284 1 135 LSC 0.011852 3 0 13 41 no 0.200000 3 0.333333 0.011852 1.000000 31.600000 IGS_071 igs psaJ|rpl33 psaJ-rpl33 66285 66719 0 435 LSC 0.010115 9 12 4 54 no 0.200000 3 0.333333 0.010332 0.993103 35.700000 rpl33 gene rpl33 rpl33 66720 66920 1 201 LSC 0.001990 1 0 18 30 no 0.200000 2 0.500000 0.001990 1.000000 25.400000 IGS_072 igs rpl33|rps18 rpl33-rps18 66921 67161 0 241 LSC 0.011065 5 18 146 300 yes 1.000000 5 1.000000 0.009723 0.958506 60.600000 rps18 gene rps18 rps18 67162 67467 1 306 LSC 0.000000 0 0 0 74 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_073 igs rps18|rpl20 rps18-rpl20 67468 67764 0 297 LSC 0.004040 3 1 300 2 no 1.000000 5 1.000000 0.004050 1.000000 41.100000 rpl20 gene rpl20 rpl20 67765 68118 -1 354 LSC 0.005085 4 0 1 192 no 1.000000 5 1.000000 0.005085 1.000000 42.400000 IGS_074 igs rpl20|rps12 rpl20-rps12 68119 68875 0 757 LSC 0.004095 6 13 50 187 no 0.600000 4 0.750000 0.003873 1.000000 44.800000 rps12_part1 gene rps12 rps12 68876 68989 -1 114 LSC 0.000000 0 0 44 73 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 IGS_075 igs rps12|clpP rps12-clpP 68990 69169 0 180 LSC 0.031111 10 0 158 252 no 0.200000 3 0.333333 0.031111 1.000000 55.300000 clpP gene clpP clpP 69170 71222 -1 2053 LSC 0.004968 21 10 36 5 no 0.600000 4 0.750000 0.004984 0.999513 39.500000 IGS_076 igs clpP|psbB clpP-psbB 71223 71709 0 487 LSC 0.010267 10 5 162 300 yes 1.000000 5 1.000000 0.010305 1.000000 62.000000 psbB gene psbB psbB 71710 73236 1 1527 LSC 0.001179 3 0 27 72 no 0.200000 3 0.333333 0.001179 1.000000 31.500000 IGS_077 igs psbB|psbT psbB-psbT 73237 73423 0 187 LSC 0.002139 1 0 300 47 no 0.200000 2 0.500000 0.002139 1.000000 27.700000 psbT gene psbT psbT 73424 73525 1 102 LSC 0.005882 1 0 114 30 no 0.000000 2 0.000000 0.005882 1.000000 24.900000 IGS_078 igs psbT|psbN psbT-psbN 73526 73590 0 65 LSC 0.009231 1 0 54 210 no 0.000000 2 0.000000 0.009231 1.000000 28.900000 psbN gene psbN psbN 73591 73722 -1 132 LSC 0.000000 0 0 34 78 no 0.000000 1 0.000000 0.000000 1.000000 21.300000 IGS_079 igs psbN|psbH psbN-psbH 73723 73826 0 104 LSC 0.005769 1 0 166 83 no 0.000000 2 0.000000 0.005769 1.000000 28.800000 psbH gene psbH psbH 73827 74048 1 222 LSC 0.002703 1 0 25 52 no 0.000000 2 0.000000 0.002703 1.000000 22.400000 IGS_080 igs psbH|petB psbH-petB 74049 74183 0 135 LSC 0.019259 6 0 138 97 no 0.600000 4 0.750000 0.019259 1.000000 51.500000 petB gene petB petB 74184 75633 1 1450 LSC 0.005655 16 13 14 147 no 1.000000 5 1.000000 0.005695 0.994483 49.700000 IGS_081 igs petB|petD petB-petD 75634 75821 0 188 LSC 0.003191 1 7 114 249 no 0.200000 3 0.333333 0.003233 1.000000 37.600000 petD gene petD petD 75822 77019 1 1198 LSC 0.003840 11 0 40 7 no 1.000000 5 1.000000 0.003840 1.000000 47.200000 IGS_082 igs petD|rpoA petD-rpoA 77020 77221 0 202 LSC 0.013861 6 1 18 57 no 0.600000 4 0.750000 0.013928 0.995050 41.800000 rpoA gene rpoA rpoA 77222 78205 -1 984 LSC 0.002439 5 0 20 9 no 0.600000 4 0.750000 0.002439 1.000000 38.700000 IGS_083 igs rpoA|rps11 rpoA-rps11 78206 78274 0 69 LSC 0.005797 1 0 38 221 no 0.200000 2 0.500000 0.005797 1.000000 29.800000 rps11 gene rps11 rps11 78275 78685 -1 411 LSC 0.000973 1 0 59 0 no 0.200000 2 0.500000 0.000973 1.000000 25.600000 IGS_084 igs rps11|rpl36 rps11-rpl36 78686 78800 0 115 LSC 0.008696 2 0 189 95 no 0.200000 3 0.333333 0.008696 1.000000 35.700000 rpl36 gene rpl36 rpl36 78801 78914 -1 114 LSC 0.003509 1 0 100 33 no 0.200000 2 0.500000 0.003509 1.000000 27.700000 IGS_085 igs rpl36|rps8 rpl36-rps8 78915 79389 0 475 LSC 0.013895 12 14 18 300 no 0.600000 4 0.750000 0.014250 0.995789 47.600000 rps8 gene rps8 rps8 79390 79794 -1 405 LSC 0.000000 0 0 18 87 no 0.000000 1 0.000000 0.000000 1.000000 22.300000 IGS_086 igs rps8|rpl14 rps8-rpl14 79795 80011 0 217 LSC 0.007373 3 0 300 153 no 0.200000 3 0.333333 0.007373 1.000000 39.000000 rpl14 gene rpl14 rpl14 80012 80380 -1 369 LSC 0.003252 2 0 76 12 no 0.000000 2 0.000000 0.003252 1.000000 23.200000 IGS_087 igs rpl14|rpl16 rpl14-rpl16 80381 80503 0 123 LSC 0.011382 3 0 100 138 no 0.600000 4 0.750000 0.011382 1.000000 45.700000 rpl16 gene rpl16 rpl16 80504 82024 -1 1521 LSC 0.008416 25 21 22 57 no 1.000000 5 1.000000 0.008510 0.991453 52.600000 IGS_088 igs rpl16|rps3 rpl16-rps3 82025 82198 0 174 LSC 0.008046 3 0 50 41 no 0.600000 4 0.750000 0.008046 1.000000 38.900000 rps3 gene rps3 rps3 82199 82855 -1 657 LSC 0.003044 4 0 9 57 no 0.200000 3 0.333333 0.003044 1.000000 31.600000 rpl22 gene rpl22 rpl22 82840 83322 -1 483 LSC 0.004555 5 0 164 300 no 0.600000 4 0.750000 0.004555 1.000000 49.500000 IGS_090 igs rpl22|rps19 rpl22-rps19 83323 83377 0 55 LSC 0.000000 0 0 13 300 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 rps19 gene rps19 rps19 83378 83656 -1 279 LSC 0.000000 0 0 68 300 no 0.000000 1 0.000000 0.000000 1.000000 23.800000 IGS_091 igs rps19|rpl2 rps19-rpl2 83657 83710 0 54 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl2 gene rpl2 rpl2 83711 85217 -1 1507 LSC 0.000531 2 0 300 300 no 0.200000 2 0.500000 0.000531 1.000000 44.100000 IGS_092 igs rpl2|rpl23 rpl2-rpl23 85218 85235 0 18 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 85236 85517 -1 282 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_093 igs rpl23|trnI rpl23-trnI 85518 85685 0 168 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_094 igs trnI|ycf2 trnI-ycf2 85760 85847 0 88 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 85848 92723 1 6876 LSC 0.000698 11 0 300 300 no 1.000000 5 1.000000 0.000698 1.000000 53.000000 IGS_095 igs ycf2|trnL ycf2-trnL 92724 93640 0 917 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_096 igs trnL|ndhB trnL-ndhB 93722 94306 0 585 IRb 0.000000 0 14 300 300 no 0.200000 3 0.333333 0.000000 0.991453 46.000000 ndhB gene ndhB ndhB 94307 96537 -1 2231 IRb 0.001165 5 9 300 24 no 0.200000 3 0.333333 0.001170 0.996862 30.200000 IGS_097 igs ndhB|rps7 ndhB-rps7 96538 96850 0 313 IRb 0.001278 1 0 92 300 no 0.200000 2 0.500000 0.001278 1.000000 30.600000 rps7 gene rps7 rps7 96851 97318 -1 468 IRb 0.000000 0 0 288 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_098 igs rps7|rps12 rps7-rps12 97319 97371 0 53 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 97372 98166 -1 795 IRb 0.000000 0 0 300 203 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_099 igs rps12|trnV rps12-trnV 98167 100084 0 1918 IRb 0.001773 6 23 300 94 no 0.200000 3 0.333333 0.001786 1.000000 37.500000 IGS_100 igs trnV|rrn16S trnV-rrn16S 100157 100387 0 231 IRb 0.002597 1 0 241 300 no 0.000000 2 0.000000 0.002597 1.000000 35.500000 rrn16S rRNA rrn16S rrn16S 100388 101878 1 1491 IRb 0.000000 0 0 208 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_101 igs rrn16S|trnI rrn16S-trnI 101879 102176 0 298 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 102177 102218 1 42 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 103169 103203 1 35 IRb 0.000000 0 0 11 300 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_104 igs trnI|trnA trnI-trnA 103204 103267 0 64 IRb 0.000000 0 9 46 300 no 0.200000 2 0.500000 0.000000 1.000000 31.300000 trnA_part1 tRNA trnA trnA 103268 103305 1 38 IRb 0.000000 0 0 110 300 no 0.000000 1 0.000000 0.000000 1.000000 27.000000 trnA_part2 tRNA trnA trnA 104107 104141 1 35 IRb 0.000000 0 0 300 77 no 0.000000 1 0.000000 0.000000 1.000000 24.500000 IGS_107 igs trnA|rrn23S trnA-rrn23S 104142 104293 0 152 IRb 0.002632 1 0 300 300 no 0.200000 2 0.500000 0.002632 1.000000 39.500000 rrn23S rRNA rrn23S rrn23S 104294 107104 1 2811 IRb 0.000000 0 1 74 300 no 0.200000 2 0.500000 0.000000 0.999644 31.600000 IGS_108 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 107105 107202 0 98 IRb 0.000000 0 0 300 220 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 107203 107305 1 103 IRb 0.000000 0 0 300 117 no 0.000000 1 0.000000 0.000000 1.000000 27.500000 IGS_109 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 107306 107551 0 246 IRb 0.001626 1 0 300 162 no 0.200000 2 0.500000 0.001626 1.000000 35.900000 rrn5S rRNA rrn5S rrn5S 107552 107672 1 121 SSC 0.000000 0 0 128 41 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_110 igs rrn5S|trnR rrn5S-trnR 107673 107919 0 247 SSC 0.005668 3 0 249 222 no 0.200000 3 0.333333 0.005668 1.000000 41.600000 trnR tRNA trnR trnR 107920 107993 1 74 SSC 0.000000 0 0 144 148 no 0.000000 1 0.000000 0.000000 1.000000 29.500000 IGS_111 igs trnR|trnN trnR-trnN 107994 108623 0 630 SSC 0.003492 5 3 218 236 no 0.200000 3 0.333333 0.003505 1.000000 46.900000 trnN tRNA trnN trnN 108624 108695 -1 72 SSC 0.000000 0 0 19 164 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_112 igs trnN|L053_pgp018 trnN-L053_pgp018 108696 109018 0 323 SSC 0.001858 1 6 91 300 no 0.200000 3 0.333333 0.001869 1.000000 33.200000 L053_pgp018 gene L053_pgp018 L053_pgp018 109019 110047 1 1029 SSC 0.000972 2 12 158 80 no 0.200000 3 0.333333 0.000980 1.000000 36.800000 ndhF gene ndhF ndhF 110009 112249 -1 2241 SSC 0.004909 25 6 249 70 no 0.600000 4 0.750000 0.004916 1.000000 43.900000 IGS_114 igs ndhF|rpl32 ndhF-rpl32 112250 113097 0 848 SSC 0.014623 24 8 15 155 no 1.000000 5 1.000000 0.014744 0.992925 55.900000 rpl32 gene rpl32 rpl32 113098 113256 1 159 SSC 0.002516 1 0 13 4 no 0.200000 2 0.500000 0.002516 1.000000 24.700000 IGS_115 igs rpl32|trnL rpl32-trnL 113257 114048 0 792 SSC 0.023527 33 23 3 49 yes 1.000000 5 1.000000 0.023497 0.992424 63.000000 IGS_116 igs trnL|ccsA trnL-ccsA 114129 114241 0 113 SSC 0.021239 5 0 30 73 no 0.200000 3 0.333333 0.021239 1.000000 39.800000 ccsA gene ccsA ccsA 114242 115228 1 987 SSC 0.006484 13 0 6 118 no 0.600000 4 0.750000 0.006484 1.000000 41.300000 IGS_117 igs ccsA|ndhD ccsA-ndhD 115229 115456 0 228 SSC 0.002632 1 9 10 161 no 0.600000 4 0.750000 0.002667 1.000000 37.200000 ndhD gene ndhD ndhD 115457 116899 -1 1443 SSC 0.003049 9 0 109 117 no 1.000000 5 1.000000 0.003049 1.000000 54.100000 IGS_118 igs ndhD|psaC ndhD-psaC 116900 117114 0 215 SSC 0.010233 4 1 179 300 no 0.200000 3 0.333333 0.010254 1.000000 43.400000 psaC gene psaC psaC 117115 117360 -1 246 SSC 0.000000 0 0 32 118 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_119 igs psaC|ndhE psaC-ndhE 117361 117600 0 240 SSC 0.012500 6 0 278 127 no 1.000000 5 1.000000 0.012500 1.000000 55.800000 ndhE gene ndhE ndhE 117601 117906 -1 306 SSC 0.004575 3 0 7 4 no 0.200000 3 0.333333 0.004575 1.000000 26.200000 IGS_120 igs ndhE|ndhG ndhE-ndhG 117907 118155 0 249 SSC 0.016867 8 0 8 14 no 1.000000 5 1.000000 0.016867 1.000000 49.700000 ndhG gene ndhG ndhG 118156 118686 -1 531 SSC 0.008286 7 0 9 7 no 0.600000 4 0.750000 0.008286 1.000000 40.700000 IGS_121 igs ndhG|ndhI ndhG-ndhI 118687 119014 0 328 SSC 0.011179 6 8 13 43 no 0.200000 3 0.333333 0.010586 0.981707 33.800000 ndhI gene ndhI ndhI 119015 119533 -1 519 SSC 0.003083 3 0 9 25 no 0.600000 4 0.750000 0.003083 1.000000 37.300000 IGS_122 igs ndhI|ndhA ndhI-ndhA 119534 119617 0 84 SSC 0.009524 2 0 57 148 no 0.400000 3 0.666667 0.009524 1.000000 37.800000 ndhA gene ndhA ndhA 119618 121778 -1 2161 SSC 0.004442 20 5 31 88 no 1.000000 5 1.000000 0.004450 0.999075 48.100000 IGS_123 igs ndhA|ndhH ndhA-ndhH 121779 121779 0 1 SSC 0.000000 0 0 300 87 no 0.000000 1 0.000000 NA 1.000000 25.300000 ndhH gene ndhH ndhH 121780 122961 -1 1182 SSC 0.002707 6 0 300 79 no 0.600000 4 0.750000 0.002707 1.000000 44.000000 IGS_124 igs ndhH|rps15 ndhH-rps15 122962 123063 0 102 SSC 0.003922 1 0 300 32 no 0.200000 2 0.500000 0.003922 1.000000 27.900000 rps15 gene rps15 rps15 123064 123330 -1 267 SSC 0.001498 1 0 22 22 no 0.200000 2 0.500000 0.001498 1.000000 25.300000 IGS_125 igs rps15|ycf1 rps15-ycf1 123331 123655 0 325 SSC 0.019077 13 0 234 3 no 1.000000 5 1.000000 0.019077 1.000000 51.800000 ycf1 gene ycf1 ycf1 123656 129031 -1 5376 SSC 0.010652 112 27 1 158 yes 1.000000 5 1.000000 0.010631 1.000000 45.600000 IGS_126 igs ycf1|trnN ycf1-trnN 129032 129354 0 323 SSC 0.001858 1 6 300 91 no 0.200000 3 0.333333 0.001869 1.000000 33.200000 trnN tRNA trnN trnN 129355 129426 1 72 SSC 0.000000 0 0 164 19 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_127 igs trnN|trnR trnN-trnR 129427 130051 0 625 SSC 0.007360 9 6 236 218 no 0.600000 4 0.750000 0.006744 1.000000 57.500000 trnR tRNA trnR trnR 130052 130125 -1 74 SSC 0.000000 0 0 148 144 no 0.000000 1 0.000000 0.000000 1.000000 29.500000 IGS_128 igs trnR|rrn5S trnR-rrn5S 130126 130372 0 247 SSC 0.005668 3 0 222 250 no 0.200000 3 0.333333 0.005668 1.000000 41.600000 rrn5S rRNA rrn5S rrn5S 130373 130493 -1 121 SSC 0.000000 0 0 41 129 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_129 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 130494 130740 0 247 IRa 0.001619 1 0 162 300 no 0.200000 2 0.500000 0.001619 1.000000 35.900000 rrn4.5S rRNA rrn4.5S rrn4.5S 130741 130843 -1 103 IRa 0.000000 0 0 117 300 no 0.000000 1 0.000000 0.000000 1.000000 27.500000 IGS_130 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 130844 130941 0 98 IRa 0.000000 0 0 220 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 130942 133752 -1 2811 IRa 0.000000 0 1 300 74 no 0.200000 2 0.500000 0.000000 0.999644 31.600000 IGS_131 igs rrn23S|trnA rrn23S-trnA 133753 133904 0 152 IRa 0.002632 1 0 300 300 no 0.200000 2 0.500000 0.002632 1.000000 39.500000 trnA_part2 tRNA trnA trnA 133905 133939 -1 35 IRa 0.000000 0 0 77 300 no 0.000000 1 0.000000 0.000000 1.000000 24.500000 trnA_part1 tRNA trnA trnA 134741 134779 -1 39 IRa 0.000000 0 0 226 109 no 0.000000 1 0.000000 0.000000 1.000000 26.900000 IGS_134 igs trnA|trnI trnA-trnI 134780 134842 0 63 IRa 0.000000 0 9 265 46 no 0.200000 2 0.500000 0.000000 1.000000 31.300000 trnI_part2 tRNA trnI trnI 134843 134877 -1 35 IRa 0.000000 0 0 300 11 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 trnI_part1 tRNA trnI trnI 135833 135869 -1 37 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_137 igs trnI|rrn16S trnI-rrn16S 135870 136167 0 298 IRa 0.000000 0 10 300 300 no 0.200000 2 0.500000 0.000000 1.000000 41.500000 rrn16S rRNA rrn16S rrn16S 136168 137658 -1 1491 IRa 0.000000 0 0 300 208 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_138 igs rrn16S|trnV rrn16S-trnV 137659 137889 0 231 IRa 0.002597 1 0 300 241 no 0.000000 2 0.000000 0.002597 1.000000 35.500000 IGS_139 igs trnV|rps12 trnV-rps12 137962 139879 0 1918 IRa 0.001773 6 23 94 300 no 0.200000 3 0.333333 0.001786 1.000000 37.500000 rps12_part2 gene rps12 rps12 139880 140674 1 795 IRa 0.000000 0 0 203 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_140 igs rps12|rps7 rps12-rps7 140675 140727 0 53 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 140728 141195 1 468 IRa 0.000000 0 0 300 288 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_141 igs rps7|ndhB rps7-ndhB 141196 141508 0 313 IRa 0.001278 1 0 300 92 no 0.200000 2 0.500000 0.001278 1.000000 30.600000 ndhB gene ndhB ndhB 141509 143739 1 2231 IRa 0.000986 4 9 24 300 no 0.200000 3 0.333333 0.000990 0.996862 30.100000 IGS_142 igs ndhB|trnL ndhB-trnL 143740 144324 0 585 IRa 0.000000 0 14 300 300 no 0.200000 3 0.333333 0.000000 0.991453 46.000000 IGS_143 igs trnL|ycf2 trnL-ycf2 144406 145322 0 917 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 ycf2 gene ycf2 ycf2 145323 152201 -1 6879 LSC 0.000756 12 3 300 300 no 1.000000 5 1.000000 0.000756 0.999564 53.100000 IGS_144 igs ycf2|trnI ycf2-trnI 152202 152289 0 88 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_145 igs trnI|rpl23 trnI-rpl23 152364 152531 0 168 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 152532 152813 1 282 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_146 igs rpl23|rpl2 rpl23-rpl2 152814 152831 0 18 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 152832 154338 1 1507 LSC 0.000531 2 0 300 265 no 0.200000 2 0.500000 0.000531 1.000000 44.100000 IGS_147 igs rpl2|trnH rpl2-trnH 154339 10 0 170 LSC 0.000000 0 7 300 95 no 0.000000 2 0.000000 0.000000 1.000000 30.500000