primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score trnL-UAA-trnT-UGU_p1 trnL-UAA-trnT-UGU 1 ACCAATTTCGCCATATCCCC GCGATGCTCTAACCTCTGAG 20 20 50.0 55.0 58.0 57.9 0.0 0.0 0.137364 13909 15021 1142-1223 0.952381 85.0 trnL-UAA-trnT-UGU_p2 trnL-UAA-trnT-UGU 2 ACCAATTTCGCCATATCCCC GAGTCGAACCGATGACCATC 20 20 50.0 55.0 58.0 58.2 0.0 0.0 0.163174 13909 15021 1173-1254 0.952381 84.6 trnL-UAA-trnT-UGU_p3 trnL-UAA-trnT-UGU 3 TAGCGTCTACCAATTTCGCC GCGATGCTCTAACCTCTGAG 20 20 50.0 55.0 58.1 57.9 0.0 0.0 0.202173 13909 15021 1150-1231 0.952381 84.4 trnL-UAA-trnT-UGU_p4 trnL-UAA-trnT-UGU 4 TAGCGTCTACCAATTTCGCC GAGTCGAACCGATGACCATC 20 20 50.0 55.0 58.1 58.2 0.0 0.0 0.227983 13909 15021 1181-1262 0.952381 84.1 trnL-UAA-trnT-UGU_p5 trnL-UAA-trnT-UGU 5 CCCATTGTGAATTCCAGGGT GCGATGCTCTAACCTCTGAG 20 20 50.0 55.0 57.8 57.9 2.3 0.0 0.369229 13909 15021 1235-1316 0.952381 82.9 trnD-GTC-psbM_p1 trnD-GTC-psbM 1 CATAGTAGAATGGCGGTCGG CCCCGGATCATCTGTCAATT 20 20 55.0 50.0 57.9 57.4 0.0 0.7 0.711831 31077 31487 1709-1731 0.857143 75.5 trnD-GTC-psbM_p2 trnD-GTC-psbM 2 CATAGTAGAATGGCGGTCGG TCGATGAACTGGTTACGACC 20 20 55.0 50.0 57.9 57.4 0.0 0.0 0.708131 31077 31487 1775-1797 0.809524 72.5 trnD-GTC-psbM_p3 trnD-GTC-psbM 3 AAGTATGCCCCCATCGTCTA TCGATGAACTGGTTACGACC 20 20 50.0 50.0 57.9 57.4 0.0 0.0 0.739248 31077 31487 1753-1775 0.809524 72.2 trnD-GTC-psbM_p4 trnD-GTC-psbM 4 GAGTAATCCGTGCCGATCTC CCCCGGATCATCTGTCAATT 20 20 55.0 50.0 57.9 57.4 0.0 0.7 0.699120 31077 31487 1221-1246 0.523810 61.7 trnD-GTC-psbM_p5 trnD-GTC-psbM 5 GAGTAATCCGTGCCGATCTC TCGATGAACTGGTTACGACC 20 20 55.0 50.0 57.9 57.4 0.0 0.0 0.695421 31077 31487 1287-1312 0.476190 58.5 trnC-GCA-rpoB_p1 trnC-GCA-rpoB 1 CTTACCACTCGGCCATATCG TTCATTTCCAACCCCAAGCA 20 20 55.0 45.0 57.9 57.9 2.2 0.0 0.160093 33572 34620 1088-1097 0.952381 83.9 trnC-GCA-rpoB_p2 trnC-GCA-rpoB 2 CCGGATTTGAACTGGGGAAA TTCATTTCCAACCCCAAGCA 20 20 50.0 45.0 58.1 57.9 0.0 0.0 0.176228 33572 34620 1128-1137 0.952381 83.7 trnC-GCA-rpoB_p3 trnC-GCA-rpoB 3 CTTACCACTCGGCCATATCG TACGCCCCGATCAATGAATC 20 20 55.0 50.0 57.9 57.8 2.2 0.0 0.229811 33572 34620 1160-1169 0.952381 83.2 trnC-GCA-rpoB_p4 trnC-GCA-rpoB 4 CCGGATTTGAACTGGGGAAA TACGCCCCGATCAATGAATC 20 20 50.0 50.0 58.1 57.8 0.0 0.0 0.245946 33572 34620 1200-1209 0.952381 83.0 trnC-GCA-rpoB_p5 trnC-GCA-rpoB 5 CTTACCACTCGGCCATATCG AAGTTCTTCTGTTACGCCCC 20 20 55.0 50.0 57.9 57.8 2.2 0.0 0.246425 33572 34620 1172-1181 0.904762 80.3 atpH-atpF_p1 atpH-atpF 1 CCGGAAGCAGAGGACAAAAT GATGGCCAGTAACTCAAGCA 20 20 50.0 50.0 58.2 57.9 0.0 13.0 0.287475 47898 48540 785-839 0.952381 83.9 atpH-atpF_p2 atpH-atpF 2 TGGGCTGGTTGTAGCATTAG GATGGCCAGTAACTCAAGCA 20 20 50.0 50.0 57.6 57.9 0.0 13.0 0.532228 47898 48540 714-768 0.952381 82.4 atpH-atpF_p3 atpH-atpF 3 CCGGAAGCAGAGGACAAAAT CGGATGGCCAGTAACTCAAG 20 20 50.0 55.0 58.2 58.3 0.0 13.0 0.516963 47898 48540 787-841 0.952381 82.1 atpH-atpF_p4 atpH-atpF 4 CCGGAAGCAGAGGACAAAAT TGGCCAGTAACTCAAGCAAA 20 20 50.0 45.0 58.2 57.6 0.0 0.0 0.530280 47898 48540 783-837 0.952381 82.0 atpH-atpF_p5 atpH-atpF 5 CCGGAAGCAGAGGACAAAAT ATCAAACCCGAAACTTCCGG 20 20 50.0 50.0 58.2 58.5 0.0 0.0 0.643292 47898 48540 807-861 0.952381 81.0 trnQ-UUG-accD_p1 trnQ-UUG-accD 1 GAGGTTCGAATCCTTCCGTC TTCCGTATGTTCCTGCGATC 20 20 55.0 50.0 58.1 57.8 16.9 0.0 0.295054 53902 54680 882-1245 0.904762 82.1 trnQ-UUG-accD_p2 trnQ-UUG-accD 2 GAGGTTCGAATCCTTCCGTC GTATGTTCCTGCGATCCACT 20 20 55.0 50.0 58.1 57.4 16.9 0.0 0.680147 53902 54680 878-1511 0.952381 81.6 trnQ-UUG-accD_p3 trnQ-UUG-accD 3 GAGGTTCGAATCCTTCCGTC CGTATGTTCCTGCGATCCAC 20 20 55.0 55.0 58.1 58.8 16.9 0.0 0.866973 53902 54680 879-1512 0.952381 80.1 trnQ-UUG-accD_p4 trnQ-UUG-accD 4 GAGGTTCGAATCCTTCCGTC AATTCCGTATGTTCCTGCGA 20 20 55.0 45.0 58.1 57.3 16.9 0.0 0.760102 53902 54680 884-1247 0.904762 78.3 trnQ-UUG-accD_p5 trnQ-UUG-accD 5 TTCGGAGGTTCGAATCCTTC TTCCGTATGTTCCTGCGATC 20 20 50.0 50.0 57.3 57.8 16.9 0.0 0.886426 53902 54680 886-1249 0.904762 77.3 trnP-UGG-psaJ_p1 trnP-UGG-psaJ 1 AAAACAAACGCGCTACCAAG TGCTAAAACCGCGAACCATA 20 20 45.0 45.0 57.9 57.9 5.7 8.2 0.210130 62984 63632 620-769 0.952381 86.0 trnP-UGG-psaJ_p2 trnP-UGG-psaJ 2 AAAACAAACGCGCTACCAAG CGGTGCCACAGAGAGATATG 20 20 45.0 55.0 57.9 57.9 5.7 0.0 0.259868 62984 63632 587-736 0.952381 85.9 trnP-UGG-psaJ_p3 trnP-UGG-psaJ 3 CAAAACAAACGCGCTACCAA TGCTAAAACCGCGAACCATA 20 20 45.0 45.0 58.2 57.9 5.7 8.2 0.267388 62984 63632 621-770 0.952381 85.6 trnP-UGG-psaJ_p4 trnP-UGG-psaJ 4 TTGTACCCAAAACAAACGCG TGCTAAAACCGCGAACCATA 20 20 45.0 45.0 57.8 57.9 3.5 8.2 0.286545 62984 63632 628-777 0.952381 85.4 trnP-UGG-psaJ_p5 trnP-UGG-psaJ 5 AAAACAAACGCGCTACCAAG ATAGAGTACTTGCCACCGGT 20 20 45.0 50.0 57.9 58.1 5.7 0.0 0.251928 62984 63632 603-752 0.904762 81.9 clpP_p1 clpP 1 CCCTCTTAGTCCGTTCTTGC AACAGGGTCAGAGGGATCAA 20 20 55.0 50.0 58.0 58.0 0.0 0.0 0.056333 66665 67975 2394-2610 0.952381 85.4 clpP_p2 clpP 2 CCCTCTTAGTCCGTTCTTGC ACAGGGTCAGAGGGATCAAA 20 20 55.0 50.0 58.0 58.0 0.0 0.0 0.056333 66665 67975 2393-2609 0.952381 85.4 clpP_p3 clpP 3 CCCTCTTAGTCCGTTCTTGC ACGAACATACCCTGTCTCCA 20 20 55.0 50.0 58.0 58.1 0.0 0.0 0.078519 66665 67975 2426-2642 0.952381 85.1 clpP_p4 clpP 4 CCCTCTTAGTCCGTTCTTGC AAAAGCACAAGCCCGAAAAC 20 20 55.0 45.0 58.0 58.1 0.0 0.0 0.076951 66665 67975 2566-2782 0.952381 84.7 clpP_p5 clpP 5 CCCTCTTAGTCCGTTCTTGC CAAAAAGCACAAGCCCGAAA 20 20 55.0 45.0 58.0 58.1 0.0 0.0 0.078294 66665 67975 2568-2784 0.952381 84.7 rpl2_p1 rpl2 1 TGTATTGTAAAGACGAAGAAACA CGCTTCAACCGGGTTATTCT 23 20 30.4 50.0 54.3 58.3 0.0 13.0 6.970741 80337 81870 1662-1684 0.857143 36.1 rpl2_p2 rpl2 2 TGTATTGTAAAGACGAAGAAACAA CGCTTCAACCGGGTTATTCT 24 20 29.2 50.0 55.0 58.3 0.0 13.0 7.227269 80337 81870 1662-1684 0.857143 36.1 rpl2_p3 rpl2 3 TGTATTGTAAAGACGAAGAAACA ATCATTACGCTTCAACCGGG 23 20 30.4 50.0 54.3 58.3 0.0 6.3 7.041209 80337 81870 1669-1691 0.857143 36.0 rpl2_p4 rpl2 4 TTGTATTGTAAAGACGAAGAAACA CGCTTCAACCGGGTTATTCT 24 20 29.2 50.0 55.0 58.3 0.0 13.0 7.227269 80337 81870 1663-1685 0.857143 36.0 rpl2_p5 rpl2 5 TGTATTGTAAAGACGAAGAAACA ACGCTTCAACCGGGTTATTC 23 20 30.4 50.0 54.3 58.6 0.0 13.0 7.259033 80337 81870 1663-1685 0.857143 36.0 rpl23-trnI-CAU_p1 rpl23-trnI-CAU 1 TCTGTCCTAGTTGATCCCGA ATTGGCGAAGTCGTAGGTTC 20 20 50.0 50.0 57.2 58.0 0.0 2.3 0.826698 82173 82688 586-1050 0.952381 82.4 rpl23-trnI-CAU_p2 rpl23-trnI-CAU 2 TCTGTCCTAGTTGATCCCGA GGCGAAGTCGTAGGTTCAAT 20 20 50.0 50.0 57.2 58.0 0.0 2.3 0.826698 82173 82688 583-1047 0.952381 82.4 rpl23-trnI-CAU_p3 rpl23-trnI-CAU 3 TCTGTCCTAGTTGATCCCGA GAATGGTTAAAGCGCCCAAC 20 20 50.0 50.0 57.2 58.0 0.0 2.3 0.829929 82173 82688 611-1075 0.952381 82.2 rpl23-trnI-CAU_p4 rpl23-trnI-CAU 4 CCTAGTTGATCCCGATTCGAC ATTGGCGAAGTCGTAGGTTC 21 20 52.4 50.0 58.0 58.0 7.8 2.3 1.020575 82173 82688 581-1045 0.952381 80.9 rpl23-trnI-CAU_p5 rpl23-trnI-CAU 5 CCTAGTTGATCCCGATTCGAC GGCGAAGTCGTAGGTTCAAT 21 20 52.4 50.0 58.0 58.0 7.8 2.3 1.020575 82173 82688 578-1042 0.952381 80.9 trnL-CAA-ndhB_p1 trnL-CAA-ndhB 1 GTCTCGCGTGTCTACCATTT CCAGGAATATCAATGAACCCCA 20 22 50.0 45.5 58.0 57.8 5.8 0.0 2.191054 89071 89637 624-670 0.952381 68.5 trnL-CAA-ndhB_p2 trnL-CAA-ndhB 2 CTCGCGTGTCTACCATTTCA CCAGGAATATCAATGAACCCCA 20 22 50.0 45.5 58.0 57.8 5.8 0.0 2.192424 89071 89637 622-668 0.952381 68.5 trnL-CAA-ndhB_p3 trnL-CAA-ndhB 3 GTCTCGCGTGTCTACCATTT ACCAGGAATATCAATGAACCCC 20 22 50.0 45.5 58.0 57.8 5.8 0.0 2.192479 89071 89637 625-671 0.952381 68.5 trnL-CAA-ndhB_p4 trnL-CAA-ndhB 4 CTCGCGTGTCTACCATTTCA ACCAGGAATATCAATGAACCCC 20 22 50.0 45.5 58.0 57.8 5.8 0.0 2.193850 89071 89637 623-669 0.952381 68.5 trnL-CAA-ndhB_p5 trnL-CAA-ndhB 5 TACCATTTCACCACCAAGGC CCAGGAATATCAATGAACCCCA 20 22 50.0 45.5 58.1 57.8 0.0 0.0 2.265351 89071 89637 612-658 0.952381 68.1 rps12-trnV-GAC_p1 rps12-trnV-GAC 1 GAGGTTAAGCGTACTCTGGC TTCGAACCGATGACTTCCAC 20 20 55.0 50.0 58.1 57.9 0.0 0.0 0.150648 92901 94469 1689-1799 0.952381 81.8 rps12-trnV-GAC_p2 rps12-trnV-GAC 2 GGTTAAGCGTACTCTGGCAA TTCGAACCGATGACTTCCAC 20 20 50.0 50.0 57.9 57.9 0.0 0.0 0.163497 92901 94469 1687-1797 0.952381 81.7 rps12-trnV-GAC_p3 rps12-trnV-GAC 3 GAGGTTAAGCGTACTCTGGC GATGACTTCCACCACGTCAA 20 20 55.0 50.0 58.1 57.8 0.0 0.0 0.239919 92901 94469 1681-1791 0.952381 81.1 rps12-trnV-GAC_p4 rps12-trnV-GAC 4 GAGGTTAAGCGTACTCTGGC ATGACTTCCACCACGTCAAG 20 20 55.0 50.0 58.1 57.8 0.0 0.0 0.245933 92901 94469 1680-1790 0.952381 81.1 rps12-trnV-GAC_p5 rps12-trnV-GAC 5 GGTTAAGCGTACTCTGGCAA GATGACTTCCACCACGTCAA 20 20 50.0 50.0 57.9 57.8 0.0 0.0 0.252768 92901 94469 1679-1789 0.952381 81.0 trnR-ACG-trnN-GUU_p1 trnR-ACG-trnN-GUU 1 CAGAGGATTAGAGCACGTGG CCGATTGGTCGTAGGTTCAA 20 20 55.0 50.0 57.8 57.6 18.9 0.0 0.589447 102217 102650 515-532 0.952381 82.0 trnR-ACG-trnN-GUU_p2 trnR-ACG-trnN-GUU 2 CAGAGGATTAGAGCACGTGG TTGGTCCTCAGTAGCTCAGT 20 20 55.0 50.0 57.8 57.7 18.9 0.0 0.526686 102217 102650 556-573 0.952381 81.9 trnR-ACG-trnN-GUU_p3 trnR-ACG-trnN-GUU 3 CAGAGGATTAGAGCACGTGG GTCCTCAGTAGCTCAGTGGT 20 20 55.0 55.0 57.8 58.4 18.9 0.0 0.664455 102217 102650 553-570 0.952381 80.8 trnR-ACG-trnN-GUU_p4 trnR-ACG-trnN-GUU 4 CAGAGGATTAGAGCACGTGG TGGTCCTCAGTAGCTCAGTG 20 20 55.0 55.0 57.8 58.4 18.9 0.0 0.665580 102217 102650 555-572 0.952381 80.8 trnR-ACG-trnN-GUU_p5 trnR-ACG-trnN-GUU 5 CAGAGGATTAGAGCACGTGG GTTGGTCCTCAGTAGCTCAG 20 20 55.0 55.0 57.8 57.3 18.9 0.0 0.879733 102217 102650 557-574 0.952381 79.1 ycf1_p1 ycf1 1 AGACATAAGAACCGTCCCCA CTAGCCAGACGAACAGGTTC 20 20 50.0 55.0 58.1 58.0 0.0 2.1 0.055346 107280 107399 1097-1256 0.952381 85.1 ycf1_p2 ycf1 2 AGAACCGTCCCCATTCTGTA CTAGCCAGACGAACAGGTTC 20 20 50.0 55.0 58.1 58.0 0.0 2.1 0.055346 107280 107399 1090-1249 0.952381 85.0 ycf1_p3 ycf1 3 AGAACCGTCCCCATTCTGTA GACGAACAGGTTCCACAGAA 20 20 50.0 50.0 58.1 57.8 0.0 6.6 0.287315 107280 107399 1083-1242 0.952381 83.2 ycf1_p4 ycf1 4 AGACATAAGAACCGTCCCCA ACGGCGTCTATTGGACAAAA 20 20 50.0 45.0 58.1 57.8 0.0 6.8 0.225867 107280 107399 1272-1431 0.952381 83.0 ycf1_p5 ycf1 5 AGAACCGTCCCCATTCTGTA ACGGCGTCTATTGGACAAAA 20 20 50.0 45.0 58.1 57.8 0.0 6.8 0.225867 107280 107399 1265-1424 0.952381 82.9 ycf1-rps15_p1 ycf1-rps15 1 TTGATACCCAGAACGGAAGC TCAACTGATCCAGGGTTTTCT 20 21 50.0 42.9 57.6 56.8 0.0 0.0 2.562697 108181 108625 575-597 0.952381 64.2 ycf1-rps15_p2 ycf1-rps15 2 TTGATACCCAGAACGGAAGC TGAAATTCAACTGATCCAGGGT 20 22 50.0 40.9 57.6 57.6 0.0 0.0 2.783616 108181 108625 581-603 0.952381 62.4 ycf1-rps15_p3 ycf1-rps15 3 TTGATACCCAGAACGGAAGC TCAACTGATCCAGGGTTTTCTT 20 22 50.0 40.9 57.6 57.5 0.0 0.0 2.850069 108181 108625 575-597 0.952381 61.9 ycf1-rps15_p4 ycf1-rps15 4 TTGATACCCAGAACGGAAGC TTCAACTGATCCAGGGTTTTCT 20 22 50.0 40.9 57.6 57.5 0.0 0.0 2.850069 108181 108625 576-598 0.952381 61.9 ycf1-rps15_p5 ycf1-rps15 5 TTGATACCCAGAACGGAAGC ACTGATCCAGGGTTTTCTTCT 20 21 50.0 42.9 57.6 56.5 0.0 0.0 2.856517 108181 108625 572-594 0.952381 61.9 trnL-TAG-rpl32_p1 trnL-TAG-rpl32 1 TCCTAAGAGCAGCGTGTCTA TGGACAGCATTGAAAGCCTT 20 20 50.0 45.0 57.9 58.0 0.0 0.0 0.124629 118136 118814 660-816 0.952381 85.0 trnL-TAG-rpl32_p2 trnL-TAG-rpl32 2 TCCTAAGAGCAGCGTGTCTA TTGGACAGCATTGAAAGCCT 20 20 50.0 45.0 57.9 58.0 0.0 0.0 0.124629 118136 118814 661-817 0.952381 85.0 trnL-TAG-rpl32_p3 trnL-TAG-rpl32 3 AGCAGCGTGTCTACCAATTT TGGACAGCATTGAAAGCCTT 20 20 45.0 45.0 57.8 58.0 0.0 0.0 0.185356 118136 118814 653-809 0.952381 84.5 trnL-TAG-rpl32_p4 trnL-TAG-rpl32 4 ATGGGATTGTAGAGCGGGTA TGGACAGCATTGAAAGCCTT 20 20 50.0 45.0 57.9 58.0 0.0 0.0 0.097462 118136 118814 1239-1389 0.952381 84.3 trnL-TAG-rpl32_p5 trnL-TAG-rpl32 5 ATGGGATTGTAGAGCGGGTA TTGGACAGCATTGAAAGCCT 20 20 50.0 45.0 57.9 58.0 0.0 0.0 0.097462 118136 118814 1240-1390 0.952381 84.3 rpl32-ndhF_p1 rpl32-ndhF 1 AAGGCTTTCAATGCTGTCCA TGGAAGTGGGAGGAAAGGTA 20 20 45.0 50.0 58.0 57.6 0.0 0.0 0.426783 118968 119696 872-906 0.904762 77.0 rpl32-ndhF_p2 rpl32-ndhF 2 AGGCTTTCAATGCTGTCCAA TGGAAGTGGGAGGAAAGGTA 20 20 45.0 50.0 58.0 57.6 0.0 0.0 0.426783 118968 119696 871-905 0.904762 77.0 rpl32-ndhF_p3 rpl32-ndhF 3 AAGGCTTTCAATGCTGTCCA TTTTGTTGCCGTGGGAAAAA 20 20 45.0 40.0 58.0 57.2 0.0 0.0 0.762887 118968 119696 923-957 0.952381 76.8 rpl32-ndhF_p4 rpl32-ndhF 4 AGGCTTTCAATGCTGTCCAA TTTTGTTGCCGTGGGAAAAA 20 20 45.0 40.0 58.0 57.2 0.0 0.0 0.762887 118968 119696 922-956 0.952381 76.8 rpl32-ndhF_p5 rpl32-ndhF 5 AGGCTTTCAATGCTGTCCAA TTTTTGTTGCCGTGGGAAAA 20 20 45.0 40.0 58.0 57.2 0.0 0.0 0.762887 118968 119696 923-957 0.952381 76.8 ndhF_p1 ndhF 1 ACCGAACCCTTTACAAAAGAGA CATAGAGATGGAATAGTACATTATATT 22 27 40.9 25.9 57.6 52.7 1.0 0.0 14.710146 119697 121931 2357-2383 0.952381 39.6 ndhF_p2 ndhF 2 ACCGAACCCTTTACAAAAGAG CATAGAGATGGAATAGTACATTATATT 21 27 42.9 25.9 56.1 52.7 1.0 0.0 15.188534 119697 121931 2357-2383 0.952381 39.6 ndhF_p3 ndhF 3 ACCGAACCCTTTACAAAAGAGAT CATAGAGATGGAATAGTACATTATATT 23 27 39.1 25.9 58.0 52.7 1.0 0.0 15.301598 119697 121931 2357-2383 0.952381 39.6 ndhF_p4 ndhF 4 AACCGAACCCTTTACAAAAGAG CATAGAGATGGAATAGTACATTATATT 22 27 40.9 25.9 56.8 52.7 1.0 0.0 15.459533 119697 121931 2358-2384 0.952381 39.6 ndhF_p5 ndhF 5 CCGAACCCTTTACAAAAGAGA CATAGAGATGGAATAGTACATTATATT 21 27 42.9 25.9 55.8 52.7 1.0 0.0 15.464184 119697 121931 2356-2382 0.952381 39.6