feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH-GUG tRNA trnH-GUG trnH-GUG 34 107 -1 74 LSC 0.000000 0 0 11 4 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_001 igs trnH-GUG|psbA trnH-GUG-psbA 108 291 0 184 LSC 0.016304 3 0 85 285 no 1.000000 2 1.000000 NA 1.000000 53.200000 psbA gene psbA psbA 292 1353 -1 1062 LSC 0.002825 3 0 152 300 no 1.000000 2 1.000000 NA 1.000000 56.800000 IGS_002 igs psbA|trnK-UUU psbA-trnK-UUU 1354 1554 0 201 LSC 0.000000 0 1 300 274 no 1.000000 2 1.000000 NA 0.995025 53.000000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1555 1589 -1 35 LSC 0.000000 0 0 300 239 no 0.000000 1 0.000000 NA 1.000000 33.800000 matK gene matK matK 1852 3369 -1 1518 LSC 0.005929 9 0 22 44 no 1.000000 2 1.000000 NA 1.000000 48.800000 IGS_005 igs matK|trnK-UUU matK-trnK-UUU 3370 4104 0 735 LSC 0.008163 6 0 142 42 no 1.000000 2 1.000000 NA 1.000000 51.600000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 4105 4141 -1 37 LSC 0.000000 0 0 35 5 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_006 igs trnK-UUU|rps16 trnK-UUU-rps16 4142 4873 0 732 LSC 0.016949 12 24 72 160 yes 1.000000 2 1.000000 NA 0.967213 62.000000 rps16 gene rps16 rps16 4874 5964 -1 1091 LSC 0.008257 9 1 23 49 yes 1.000000 2 1.000000 NA 0.999083 50.300000 IGS_007 igs rps16|trnQ-UUG rps16-trnQ-UUG 5965 7243 0 1279 LSC 0.008000 10 29 3 152 no 1.000000 2 1.000000 NA 0.977326 50.700000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 7244 7315 -1 72 LSC 0.000000 0 0 56 80 no 0.000000 1 0.000000 NA 1.000000 22.900000 IGS_008 igs trnQ-UUG|psbK trnQ-UUG-psbK 7316 7667 0 352 LSC 0.005714 2 2 128 42 no 1.000000 2 1.000000 NA 0.994318 45.600000 psbK gene psbK psbK 7668 7853 1 186 LSC 0.005376 1 0 123 10 no 1.000000 2 1.000000 NA 1.000000 41.300000 IGS_009 igs psbK|psbI psbK-psbI 7854 8141 0 288 LSC 0.006969 2 1 143 144 no 1.000000 2 1.000000 NA 0.996528 52.600000 psbI gene psbI psbI 8142 8252 1 111 LSC 0.000000 0 0 183 33 no 0.000000 1 0.000000 NA 1.000000 21.200000 IGS_010 igs psbI|trnS-GCU psbI-trnS-GCU 8253 8392 0 140 LSC 0.007143 1 0 294 300 no 1.000000 2 1.000000 NA 1.000000 56.600000 trnS-GCU tRNA trnS-GCU trnS-GCU 8393 8480 -1 88 LSC 0.000000 0 0 106 300 no 0.000000 1 0.000000 NA 1.000000 26.700000 IGS_011 igs trnS-GCU|trnG-GCC trnS-GCU-trnG-GCC 8481 9036 0 556 LSC 0.003676 2 12 194 192 no 1.000000 2 1.000000 NA 0.978417 61.400000 trnG-GCC_part1 tRNA trnG-GCC trnG-GCC 9037 9059 1 23 LSC 0.000000 0 0 53 169 no 0.000000 1 0.000000 NA 1.000000 22.700000 trnG-GCC_part2 tRNA trnG-GCC trnG-GCC 9756 9796 1 41 LSC 0.000000 0 0 300 91 no 0.000000 1 0.000000 NA 1.000000 25.600000 IGS_014 igs trnG-GCC|trnR-UCU trnG-GCC-trnR-UCU 9797 9935 0 139 LSC 0.015267 2 8 300 247 yes 1.000000 2 1.000000 NA 0.942446 65.800000 trnR-UCU tRNA trnR-UCU trnR-UCU 9936 10007 1 72 LSC 0.000000 0 0 24 175 no 0.000000 1 0.000000 NA 1.000000 20.600000 IGS_015 igs trnR-UCU|atpA trnR-UCU-atpA 10008 10116 0 109 LSC 0.000000 0 0 96 66 no 0.000000 1 0.000000 NA 1.000000 23.700000 atpA gene atpA atpA 10117 11640 -1 1524 LSC 0.001312 2 0 205 18 no 1.000000 2 1.000000 NA 1.000000 45.800000 IGS_016 igs atpA|atpF atpA-atpF 11641 11689 0 49 LSC 0.040816 2 0 300 300 yes 1.000000 2 1.000000 NA 1.000000 76.000000 atpF gene atpF atpF 11690 12951 -1 1262 LSC 0.001586 2 1 6 85 no 1.000000 2 1.000000 NA 0.999208 45.200000 IGS_017 igs atpF|atpH atpF-atpH 12952 13239 0 288 LSC 0.006944 2 0 71 298 no 1.000000 2 1.000000 NA 1.000000 46.800000 atpH gene atpH atpH 13240 13485 -1 246 LSC 0.000000 0 0 199 52 no 0.000000 1 0.000000 NA 1.000000 22.700000 IGS_018 igs atpH|atpI atpH-atpI 13486 14634 0 1149 LSC 0.011775 13 45 300 186 yes 1.000000 2 1.000000 NA 0.960836 68.200000 atpI gene atpI atpI 14635 15378 -1 744 LSC 0.002688 2 0 87 163 no 1.000000 2 1.000000 NA 1.000000 51.800000 IGS_019 igs atpI|rps2 atpI-rps2 15379 15667 0 289 LSC 0.013841 4 0 44 300 no 1.000000 2 1.000000 NA 1.000000 48.800000 rps2 gene rps2 rps2 15668 16378 -1 711 LSC 0.001406 1 0 40 31 no 1.000000 2 1.000000 NA 1.000000 46.900000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 16379 16597 0 219 LSC 0.004566 1 0 179 81 no 1.000000 2 1.000000 NA 1.000000 46.200000 rpoC2 gene rpoC2 rpoC2 16598 20773 -1 4176 LSC 0.003365 14 15 187 80 no 1.000000 2 1.000000 NA 0.996408 47.100000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 20774 20996 0 223 LSC 0.004484 1 0 300 85 no 1.000000 2 1.000000 NA 1.000000 46.500000 rpoC1 gene rpoC1 rpoC1 20997 23811 -1 2815 LSC 0.004263 12 0 142 280 no 1.000000 2 1.000000 NA 1.000000 54.100000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 23812 23816 0 5 LSC 0.000000 0 0 300 275 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpoB gene rpoB rpoB 23817 27029 -1 3213 LSC 0.001867 6 0 300 182 no 1.000000 2 1.000000 NA 1.000000 55.000000 IGS_023 igs rpoB|trnC-GCA rpoB-trnC-GCA 27030 28244 0 1215 LSC 0.009934 12 7 80 59 no 1.000000 2 1.000000 NA 0.994239 54.400000 trnC-GCA tRNA trnC-GCA trnC-GCA 28245 28315 1 71 LSC 0.014085 1 0 95 300 no 1.000000 2 1.000000 NA 1.000000 52.700000 IGS_024 igs trnC-GCA|petN trnC-GCA-petN 28316 29019 0 704 LSC 0.005831 4 18 11 223 no 1.000000 2 1.000000 NA 0.974432 50.400000 petN gene petN petN 29020 29109 1 90 LSC 0.000000 0 0 129 133 no 0.000000 1 0.000000 NA 1.000000 28.400000 IGS_025 igs petN|psbM petN-psbM 29110 30001 0 892 LSC 0.013453 12 0 219 228 yes 1.000000 2 1.000000 NA 1.000000 66.500000 psbM gene psbM psbM 30002 30118 -1 117 LSC 0.000000 0 0 52 111 no 0.000000 1 0.000000 NA 1.000000 22.700000 IGS_026 igs psbM|trnD-GUC psbM-trnD-GUC 30119 30821 0 703 LSC 0.009986 7 2 169 101 no 1.000000 2 1.000000 NA 0.997155 57.300000 trnD-GUC tRNA trnD-GUC trnD-GUC 30822 30895 -1 74 LSC 0.000000 0 0 90 27 no 0.000000 1 0.000000 NA 1.000000 20.800000 IGS_027 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 30896 31015 0 120 LSC 0.008333 1 0 164 300 no 1.000000 2 1.000000 NA 1.000000 54.600000 trnY-GUA tRNA trnY-GUA trnY-GUA 31016 31099 -1 84 LSC 0.000000 0 0 92 267 no 0.000000 1 0.000000 NA 1.000000 25.700000 IGS_028 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 31100 31174 0 75 LSC 0.000000 0 0 176 192 no 0.000000 1 0.000000 NA 1.000000 31.900000 trnE-UUC tRNA trnE-UUC trnE-UUC 31175 31247 -1 73 LSC 0.000000 0 0 251 119 no 0.000000 1 0.000000 NA 1.000000 27.700000 IGS_029 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 31248 31991 0 744 LSC 0.013532 10 5 300 290 yes 1.000000 2 1.000000 NA 0.993280 67.200000 trnT-GGU tRNA trnT-GGU trnT-GGU 31992 32063 1 72 LSC 0.000000 0 0 200 218 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_030 igs trnT-GGU|psbD trnT-GGU-psbD 32064 33484 0 1421 LSC 0.009859 14 1 272 300 yes 1.000000 2 1.000000 NA 0.999296 64.500000 psbD gene psbD psbD 33485 34546 1 1062 LSC 0.000000 0 0 185 300 no 0.000000 1 0.000000 NA 1.000000 38.900000 psbC gene psbC psbC 34494 35915 1 1422 LSC 0.000703 1 0 300 121 no 1.000000 2 1.000000 NA 1.000000 53.200000 IGS_032 igs psbC|trnS-UGA psbC-trnS-UGA 35916 36147 0 232 LSC 0.004310 1 0 300 295 no 1.000000 2 1.000000 NA 1.000000 55.000000 trnS-UGA tRNA trnS-UGA trnS-UGA 36148 36240 -1 93 LSC 0.000000 0 0 110 202 no 0.000000 1 0.000000 NA 1.000000 27.000000 IGS_033 igs trnS-UGA|psbZ trnS-UGA-psbZ 36241 36577 0 337 LSC 0.002985 1 2 203 202 no 1.000000 2 1.000000 NA 0.994065 55.600000 psbZ gene psbZ psbZ 36578 36766 1 189 LSC 0.000000 0 0 134 13 no 0.000000 1 0.000000 NA 1.000000 19.700000 IGS_034 igs psbZ|trnG-UCC psbZ-trnG-UCC 36767 37063 0 297 LSC 0.010135 3 1 300 247 no 1.000000 2 1.000000 NA 0.996633 58.600000 trnG-UCC tRNA trnG-UCC trnG-UCC 37064 37134 1 71 LSC 0.000000 0 0 4 176 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_035 igs trnG-UCC|trnfM-CAU trnG-UCC-trnfM-CAU 37135 37314 0 180 LSC 0.005747 1 6 75 300 no 1.000000 2 1.000000 NA 0.966667 49.600000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 37315 37388 -1 74 LSC 0.000000 0 0 3 300 no 0.000000 1 0.000000 NA 1.000000 19.000000 IGS_036 igs trnfM-CAU|rps14 trnfM-CAU-rps14 37389 37552 0 164 LSC 0.000000 0 0 77 249 no 0.000000 1 0.000000 NA 1.000000 24.500000 rps14 gene rps14 rps14 37553 37855 -1 303 LSC 0.003300 1 0 241 300 no 1.000000 2 1.000000 NA 1.000000 54.500000 IGS_037 igs rps14|psaB rps14-psaB 37856 37978 0 123 LSC 0.000000 0 0 53 237 no 0.000000 1 0.000000 NA 1.000000 22.700000 psaB gene psaB psaB 37979 40183 -1 2205 LSC 0.002721 6 0 176 300 no 1.000000 2 1.000000 NA 1.000000 57.000000 IGS_038 igs psaB|psaA psaB-psaA 40184 40208 0 25 LSC 0.000000 0 0 233 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psaA gene psaA psaA 40209 42461 -1 2253 LSC 0.000444 1 0 258 300 no 1.000000 2 1.000000 NA 1.000000 57.400000 IGS_039 igs psaA|ycf3 psaA-ycf3 42462 43168 0 707 LSC 0.002911 2 20 70 300 no 1.000000 2 1.000000 NA 0.971711 53.400000 ycf3 gene ycf3 ycf3 43169 45173 -1 2005 LSC 0.002504 5 8 177 118 no 1.000000 2 1.000000 NA 0.996010 53.400000 IGS_040 igs ycf3|trnS-GGA ycf3-trnS-GGA 45174 46007 0 834 LSC 0.006010 5 2 191 215 no 1.000000 2 1.000000 NA 0.997602 61.800000 trnS-GGA tRNA trnS-GGA trnS-GGA 46008 46094 1 87 LSC 0.000000 0 0 207 128 no 0.000000 1 0.000000 NA 1.000000 28.300000 IGS_041 igs trnS-GGA|rps4 trnS-GGA-rps4 46095 46412 0 318 LSC 0.003165 1 2 294 79 no 1.000000 2 1.000000 NA 0.993711 46.200000 rps4 gene rps4 rps4 46413 47018 -1 606 LSC 0.004950 3 0 189 233 no 1.000000 2 1.000000 NA 1.000000 60.800000 IGS_042 igs rps4|trnT-UGU rps4-trnT-UGU 47019 47379 0 361 LSC 0.005618 2 5 48 115 no 1.000000 2 1.000000 NA 0.986150 46.900000 trnT-UGU tRNA trnT-UGU trnT-UGU 47380 47452 -1 73 LSC 0.000000 0 0 113 42 no 0.000000 1 0.000000 NA 1.000000 21.900000 IGS_043 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 47453 48275 0 823 LSC 0.007362 6 8 186 194 yes 1.000000 2 1.000000 NA 0.990279 62.900000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 48276 48310 1 35 LSC 0.000000 0 0 22 159 no 0.000000 1 0.000000 NA 1.000000 20.400000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 48813 48862 1 50 LSC 0.000000 0 0 300 20 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_046 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 48863 49225 0 363 LSC 0.008264 3 0 300 212 no 1.000000 2 1.000000 NA 1.000000 58.600000 trnF-GAA tRNA trnF-GAA trnF-GAA 49226 49298 1 73 LSC 0.000000 0 0 92 139 no 0.000000 1 0.000000 NA 1.000000 25.700000 IGS_047 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 49299 49713 0 415 LSC 0.004988 2 14 165 155 no 1.000000 2 1.000000 NA 0.966265 57.600000 ndhJ gene ndhJ ndhJ 49714 50190 -1 477 LSC 0.002096 1 0 116 300 no 1.000000 2 1.000000 NA 1.000000 51.100000 IGS_048 igs ndhJ|ndhK ndhJ-ndhK 50191 50306 0 116 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 ndhK gene ndhK ndhK 50307 50984 -1 678 LSC 0.001475 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 59.600000 IGS_049 igs ndhK|ndhC ndhK-ndhC 50985 51030 0 46 LSC 0.000000 0 0 221 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 ndhC gene ndhC ndhC 51031 51393 -1 363 LSC 0.000000 0 0 267 48 no 0.000000 1 0.000000 NA 1.000000 23.700000 IGS_050 igs ndhC|trnV-UAC ndhC-trnV-UAC 51394 52462 0 1069 LSC 0.004677 5 0 300 121 no 1.000000 2 1.000000 NA 1.000000 55.500000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 52463 52497 -1 35 LSC 0.000000 0 0 30 86 no 0.000000 1 0.000000 NA 1.000000 21.000000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 53066 53104 -1 39 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_053 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 53105 53312 0 208 LSC 0.000000 0 20 300 120 no 1.000000 2 1.000000 NA 0.903846 50.000000 trnM-CAU tRNA trnM-CAU trnM-CAU 53313 53385 1 73 LSC 0.000000 0 0 300 47 no 0.000000 1 0.000000 NA 1.000000 22.300000 IGS_054 igs trnM-CAU|atpE trnM-CAU-atpE 53386 53567 0 182 LSC 0.016484 3 0 300 300 no 1.000000 2 1.000000 NA 1.000000 62.000000 atpE gene atpE atpE 53568 53990 -1 423 LSC 0.000000 0 0 92 300 no 0.000000 1 0.000000 NA 1.000000 28.200000 atpB gene atpB atpB 53987 55483 -1 1497 LSC 0.004008 6 0 300 34 no 1.000000 2 1.000000 NA 1.000000 48.600000 IGS_056 igs atpB|rbcL atpB-rbcL 55484 56257 0 774 LSC 0.003886 3 2 22 270 no 1.000000 2 1.000000 NA 0.997416 47.900000 rbcL gene rbcL rbcL 56258 57685 1 1428 LSC 0.003501 5 0 295 155 no 1.000000 2 1.000000 NA 1.000000 57.400000 IGS_057 igs rbcL|accD rbcL-accD 57686 58289 0 604 LSC 0.005034 3 8 6 300 no 1.000000 2 1.000000 NA 0.986755 48.400000 accD gene accD accD 58290 59759 1 1470 LSC 0.001361 2 0 215 176 no 1.000000 2 1.000000 NA 1.000000 57.700000 IGS_058 igs accD|psaI accD-psaI 59760 60207 0 448 LSC 0.009153 4 11 300 300 yes 1.000000 2 1.000000 NA 0.975446 63.200000 psaI gene psaI psaI 60208 60318 1 111 LSC 0.000000 0 0 100 300 no 0.000000 1 0.000000 NA 1.000000 26.200000 IGS_059 igs psaI|ycf4 psaI-ycf4 60319 60725 0 407 LSC 0.002457 1 0 211 300 no 1.000000 2 1.000000 NA 1.000000 56.100000 ycf4 gene ycf4 ycf4 60726 61280 1 555 LSC 0.003604 2 0 106 56 no 1.000000 2 1.000000 NA 1.000000 49.100000 IGS_060 igs ycf4|cemA ycf4-cemA 61281 61970 0 690 LSC 0.004360 3 2 174 300 no 1.000000 2 1.000000 NA 0.997101 59.600000 cemA gene cemA cemA 61971 62660 1 690 LSC 0.002899 2 0 300 264 no 1.000000 2 1.000000 NA 1.000000 60.400000 IGS_061 igs cemA|petA cemA-petA 62661 62891 0 231 LSC 0.000000 0 0 93 33 no 0.000000 1 0.000000 NA 1.000000 21.200000 petA gene petA petA 62892 63854 1 963 LSC 0.003115 3 0 300 257 no 1.000000 2 1.000000 NA 1.000000 60.500000 IGS_062 igs petA|psbJ petA-psbJ 63855 64496 0 642 LSC 0.035826 23 0 90 300 yes 1.000000 2 1.000000 NA 1.000000 71.100000 psbJ gene psbJ psbJ 64497 64619 -1 123 LSC 0.000000 0 0 57 300 no 0.000000 1 0.000000 NA 1.000000 23.000000 IGS_063 igs psbJ|psbL psbJ-psbL 64620 64757 0 138 LSC 0.000000 0 0 180 300 no 0.000000 1 0.000000 NA 1.000000 32.200000 psbL gene psbL psbL 64758 64874 -1 117 LSC 0.000000 0 0 300 190 no 0.000000 1 0.000000 NA 1.000000 33.000000 IGS_064 igs psbL|psbF psbL-psbF 64875 64896 0 22 LSC 0.000000 0 0 300 168 no 0.000000 1 0.000000 NA 1.000000 31.400000 psbF gene psbF psbF 64897 65016 -1 120 LSC 0.000000 0 0 300 48 no 0.000000 1 0.000000 NA 1.000000 22.400000 IGS_065 igs psbF|psbE psbF-psbE 65017 65025 0 9 LSC 0.000000 0 0 300 39 no 0.000000 1 0.000000 NA 1.000000 21.700000 psbE gene psbE psbE 65026 65277 -1 252 LSC 0.003968 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 54.800000 IGS_066 igs psbE|petL psbE-petL 65278 66279 0 1002 LSC 0.001007 1 9 212 300 no 1.000000 2 1.000000 NA 0.991018 60.200000 petL gene petL petL 66280 66375 1 96 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_067 igs petL|petG petL-petG 66376 66527 0 152 LSC 0.000000 0 0 300 225 no 0.000000 1 0.000000 NA 1.000000 33.800000 petG gene petG petG 66528 66641 1 114 LSC 0.000000 0 0 300 111 no 0.000000 1 0.000000 NA 1.000000 27.100000 IGS_068 igs petG|trnW-CCA petG-trnW-CCA 66642 66770 0 129 LSC 0.007752 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 57.000000 trnW-CCA tRNA trnW-CCA trnW-CCA 66771 66844 -1 74 LSC 0.000000 0 0 17 300 no 0.000000 1 0.000000 NA 1.000000 20.000000 IGS_069 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 66845 66988 0 144 LSC 0.000000 0 4 91 294 no 1.000000 2 1.000000 NA 0.972222 47.000000 trnP-UGG tRNA trnP-UGG trnP-UGG 66989 67062 -1 74 LSC 0.000000 0 0 235 220 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_070 igs trnP-UGG|psaJ trnP-UGG-psaJ 67063 67454 0 392 LSC 0.002551 1 0 300 59 no 1.000000 2 1.000000 NA 1.000000 45.300000 psaJ gene psaJ psaJ 67455 67583 1 129 LSC 0.007752 1 0 171 36 no 1.000000 2 1.000000 NA 1.000000 44.700000 IGS_071 igs psaJ|rpl33 psaJ-rpl33 67584 68044 0 461 LSC 0.006508 3 0 69 300 no 1.000000 2 1.000000 NA 1.000000 49.800000 rpl33 gene rpl33 rpl33 68045 68245 1 201 LSC 0.000000 0 0 279 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_072 igs rpl33|rps18 rpl33-rps18 68246 68406 0 161 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rps18 gene rps18 rps18 68407 68712 1 306 LSC 0.000000 0 0 300 61 no 0.000000 1 0.000000 NA 1.000000 23.500000 IGS_073 igs rps18|rpl20 rps18-rpl20 68713 68943 0 231 LSC 0.017316 4 0 300 75 no 1.000000 2 1.000000 NA 1.000000 53.100000 rpl20 gene rpl20 rpl20 68944 69330 -1 387 LSC 0.002584 1 0 78 75 no 1.000000 2 1.000000 NA 1.000000 46.400000 IGS_074 igs rpl20|rps12 rpl20-rps12 69331 70094 0 764 LSC 0.005291 4 8 300 72 no 1.000000 2 1.000000 NA 0.989529 53.200000 rps12_part1 gene rps12 rps12 70095 70211 -1 117 LSC 0.008547 1 0 177 300 no 1.000000 2 1.000000 NA 1.000000 55.700000 IGS_075 igs rps12|clpP rps12-clpP 70212 70356 0 145 LSC 0.000000 0 0 44 300 no 0.000000 1 0.000000 NA 1.000000 22.100000 clpP gene clpP clpP 70357 72410 -1 2054 LSC 0.002434 5 0 189 96 no 1.000000 2 1.000000 NA 1.000000 51.200000 IGS_076 igs clpP|psbB clpP-psbB 72411 72860 0 450 LSC 0.002222 1 0 237 230 no 1.000000 2 1.000000 NA 1.000000 56.900000 psbB gene psbB psbB 72861 74387 1 1527 LSC 0.001310 2 0 300 9 no 1.000000 2 1.000000 NA 1.000000 45.100000 IGS_077 igs psbB|psbT psbB-psbT 74388 74588 0 201 LSC 0.004975 1 0 300 293 no 1.000000 2 1.000000 NA 1.000000 55.400000 psbT gene psbT psbT 74589 74690 1 102 LSC 0.000000 0 0 191 191 no 0.000000 1 0.000000 NA 1.000000 33.100000 IGS_078 igs psbT|psbN psbT-psbN 74691 74776 0 86 LSC 0.000000 0 0 293 105 no 0.000000 1 0.000000 NA 1.000000 26.600000 psbN gene psbN psbN 74777 74908 -1 132 LSC 0.007576 1 0 300 83 no 1.000000 2 1.000000 NA 1.000000 48.100000 IGS_079 igs psbN|psbH psbN-psbH 74909 75010 0 102 LSC 0.009804 1 0 26 222 no 1.000000 2 1.000000 NA 1.000000 45.100000 psbH gene psbH psbH 75011 75232 1 222 LSC 0.000000 0 0 18 0 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_080 igs psbH|petB psbH-petB 75233 75360 0 128 LSC 0.015625 2 0 240 237 no 1.000000 2 1.000000 NA 1.000000 61.500000 petB gene petB petB 75361 76753 1 1393 LSC 0.005743 8 0 14 18 yes 1.000000 2 1.000000 NA 1.000000 48.100000 IGS_081 igs petB|petD petB-petD 76754 76932 0 179 LSC 0.005587 1 0 105 300 no 1.000000 2 1.000000 NA 1.000000 48.600000 petD gene petD petD 76933 78156 1 1224 LSC 0.000817 1 0 160 300 no 1.000000 2 1.000000 NA 1.000000 56.200000 IGS_082 igs petD|rpoA petD-rpoA 78157 78298 0 142 LSC 0.000000 0 0 165 300 no 0.000000 1 0.000000 NA 1.000000 31.100000 rpoA gene rpoA rpoA 78299 79360 -1 1062 LSC 0.001883 2 0 300 184 no 1.000000 2 1.000000 NA 1.000000 58.600000 IGS_083 igs rpoA|rps11 rpoA-rps11 79361 79427 0 67 LSC 0.000000 0 0 300 117 no 0.000000 1 0.000000 NA 1.000000 27.500000 rps11 gene rps11 rps11 79428 79844 -1 417 LSC 0.002398 1 0 300 61 no 1.000000 2 1.000000 NA 1.000000 45.900000 IGS_084 igs rps11|rpl36 rps11-rpl36 79845 79957 0 113 LSC 0.027027 3 2 299 163 yes 1.000000 2 1.000000 NA 0.982301 66.900000 rpl36 gene rpl36 rpl36 79958 80071 -1 114 LSC 0.000000 0 0 40 49 no 0.000000 1 0.000000 NA 1.000000 21.800000 IGS_085 igs rpl36|infA rpl36-infA 80072 80190 0 119 LSC 0.008403 1 0 154 300 no 1.000000 2 1.000000 NA 1.000000 53.900000 infA gene infA infA 80191 80424 -1 234 LSC 0.000000 0 0 69 300 no 0.000000 1 0.000000 NA 1.000000 23.900000 IGS_086 igs infA|rps8 infA-rps8 80425 80545 0 121 LSC 0.000000 0 0 300 192 no 0.000000 1 0.000000 NA 1.000000 33.100000 rps8 gene rps8 rps8 80546 80950 -1 405 LSC 0.002469 1 0 300 78 no 1.000000 2 1.000000 NA 1.000000 47.000000 IGS_087 igs rps8|rpl14 rps8-rpl14 80951 81149 0 199 LSC 0.015075 3 0 212 300 no 1.000000 2 1.000000 NA 1.000000 61.200000 rpl14 gene rpl14 rpl14 81150 81518 -1 369 LSC 0.000000 0 0 73 100 no 0.000000 1 0.000000 NA 1.000000 25.700000 IGS_088 igs rpl14|rpl16 rpl14-rpl16 81519 81657 0 139 LSC 0.007194 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 56.600000 rpl16 gene rpl16 rpl16 81658 83041 -1 1384 LSC 0.003652 5 15 38 300 no 1.000000 2 1.000000 NA 0.989162 49.700000 IGS_089 igs rpl16|rps3 rpl16-rps3 83042 83189 0 148 LSC 0.000000 0 0 42 300 no 0.000000 1 0.000000 NA 1.000000 21.900000 rps3 gene rps3 rps3 83190 83846 -1 657 LSC 0.001522 1 0 190 300 no 1.000000 2 1.000000 NA 1.000000 58.900000 rpl22 gene rpl22 rpl22 83831 84325 -1 495 LSC 0.000000 0 0 256 120 no 0.000000 1 0.000000 NA 1.000000 31.800000 IGS_091 igs rpl22|rps19 rpl22-rps19 84326 84391 0 66 LSC 0.000000 0 0 300 54 no 0.000000 1 0.000000 NA 1.000000 22.800000 rps19 gene rps19 rps19 84392 84670 -1 279 LSC 0.003584 1 0 300 65 no 1.000000 2 1.000000 NA 1.000000 44.400000 IGS_092 igs rps19|rpl2 rps19-rpl2 84671 84728 0 58 LSC 0.000000 0 2 224 7 no 1.000000 2 1.000000 NA 0.965517 41.400000 rpl2 gene rpl2 rpl2 84729 86210 -1 1482 LSC 0.004743 7 6 282 139 no 1.000000 2 1.000000 NA 0.995951 57.300000 IGS_093 igs rpl2|rpl23 rpl2-rpl23 86211 86228 0 18 LSC 0.000000 0 0 188 121 no 0.000000 1 0.000000 NA 1.000000 27.800000 rpl23 gene rpl23 rpl23 86229 86510 -1 282 LSC 0.003546 1 0 206 92 no 1.000000 2 1.000000 NA 1.000000 46.400000 IGS_094 igs rpl23|trnI-CAU rpl23-trnI-CAU 86511 86671 0 161 LSC 0.006211 1 0 160 300 no 1.000000 2 1.000000 NA 1.000000 53.100000 trnI-CAU tRNA trnI-CAU trnI-CAU 86672 86745 -1 74 LSC 0.000000 0 0 68 286 no 0.000000 1 0.000000 NA 1.000000 23.800000 IGS_095 igs trnI-CAU|ycf2 trnI-CAU-ycf2 86746 86833 0 88 LSC 0.000000 0 0 142 198 no 0.000000 1 0.000000 NA 1.000000 29.400000 ycf2 gene ycf2 ycf2 86834 93097 1 6264 LSC 0.005428 34 0 230 73 no 1.000000 2 1.000000 NA 1.000000 46.100000 IGS_096 igs ycf2|trnL-CAA ycf2-trnL-CAA 93098 93778 0 681 LSC 0.007364 5 2 2 86 no 1.000000 2 1.000000 NA 0.997063 48.400000 trnL-CAA tRNA trnL-CAA trnL-CAA 93779 93859 -1 81 LSC 0.000000 0 0 103 5 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_097 igs trnL-CAA|ndhB trnL-CAA-ndhB 93860 94430 0 571 LSC 0.015957 9 7 184 141 yes 1.000000 2 1.000000 NA 0.987741 64.100000 ndhB gene ndhB ndhB 94431 96651 -1 2221 LSC 0.004502 10 0 247 100 no 1.000000 2 1.000000 NA 1.000000 52.300000 IGS_098 igs ndhB|rps7 ndhB-rps7 96652 96949 0 298 LSC 0.013423 4 0 255 255 no 1.000000 2 1.000000 NA 1.000000 60.200000 rps7 gene rps7 rps7 96950 97417 -1 468 LSC 0.004274 2 0 101 16 no 1.000000 2 1.000000 NA 1.000000 44.700000 IGS_099 igs rps7|rps12 rps7-rps12 97418 97472 0 55 LSC 0.018182 1 0 107 109 no 1.000000 2 1.000000 NA 1.000000 56.000000 rps12_part2 gene rps12 rps12 97473 98266 -1 794 LSC 0.006297 5 0 38 226 no 1.000000 2 1.000000 NA 1.000000 50.200000 IGS_100 igs rps12|ycf15 rps12-ycf15 98267 99234 0 968 LSC 0.011050 8 244 300 185 yes 1.000000 2 1.000000 NA 0.747934 62.800000 ycf15 gene ycf15 ycf15 99235 99426 -1 192 LSC 0.005208 1 0 22 55 no 1.000000 2 1.000000 NA 1.000000 42.100000 IGS_101 igs ycf15|trnV-GAC ycf15-trnV-GAC 99427 100114 0 688 LSC 0.015988 11 0 6 78 yes 1.000000 2 1.000000 NA 1.000000 53.400000 trnV-GAC tRNA trnV-GAC trnV-GAC 100115 100186 1 72 LSC 0.000000 0 0 16 6 no 0.000000 1 0.000000 NA 1.000000 19.200000 IGS_102 igs trnV-GAC|rrn16S trnV-GAC-rrn16S 100187 101504 0 1318 IRb 0.005311 7 0 88 300 no 1.000000 2 1.000000 NA 1.000000 53.400000 rrn16S rRNA rrn16S rrn16S 101505 102995 1 1491 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 40.000000 IGS_103 igs rrn16S|trnI-GAU rrn16S-trnI-GAU 102996 103289 0 294 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 103290 103326 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 104277 104311 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_106 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 104312 104375 0 64 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 104376 104413 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 105228 105262 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_109 igs trnA-UGC|rrn23S trnA-UGC-rrn23S 105263 105414 0 152 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 105415 108228 1 2814 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 37.300000 IGS_110 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 108229 108326 0 98 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 108327 108429 1 103 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_111 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 108430 108687 0 258 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn5S rRNA rrn5S rrn5S 108688 108808 1 121 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_112 igs rrn5S|trnR-ACG rrn5S-trnR-ACG 108809 109065 0 257 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnR-ACG tRNA trnR-ACG trnR-ACG 109066 109139 1 74 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_113 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 109140 109445 0 306 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.900000 trnN-GUU tRNA trnN-GUU trnN-GUU 109446 109517 -1 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_114 igs trnN-GUU|ycf1 trnN-GUU-ycf1 109518 109844 0 327 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 34.300000 ycf1 gene ycf1 ycf1 109845 111758 1 1914 IRb 0.000529 1 25 300 84 no 1.000000 2 1.000000 NA 0.986938 50.800000 IGS_115 igs ycf1|ndhF ycf1-ndhF 111759 111838 0 80 SSC 0.000000 0 30 300 4 no 1.000000 2 1.000000 NA 0.625000 33.500000 ndhF gene ndhF ndhF 111839 114085 -1 2247 SSC 0.006676 15 0 300 226 yes 1.000000 2 1.000000 NA 1.000000 61.000000 IGS_116 igs ndhF|rpl32 ndhF-rpl32 114086 115077 0 992 SSC 0.007150 7 13 174 196 yes 1.000000 2 1.000000 NA 0.986895 62.200000 rpl32 gene rpl32 rpl32 115078 115239 1 162 SSC 0.000000 0 0 132 34 no 0.000000 1 0.000000 NA 1.000000 21.300000 IGS_117 igs rpl32|trnL-UAG rpl32-trnL-UAG 115240 116178 0 939 SSC 0.012941 11 89 294 300 yes 1.000000 2 1.000000 NA 0.905218 69.600000 trnL-UAG tRNA trnL-UAG trnL-UAG 116179 116258 1 80 SSC 0.000000 0 0 120 300 no 0.000000 1 0.000000 NA 1.000000 27.700000 IGS_118 igs trnL-UAG|ccsA trnL-UAG-ccsA 116259 116354 0 96 SSC 0.000000 0 0 200 272 no 0.000000 1 0.000000 NA 1.000000 33.800000 ccsA gene ccsA ccsA 116355 117329 1 975 SSC 0.004103 4 0 296 19 no 1.000000 2 1.000000 NA 1.000000 47.500000 IGS_119 igs ccsA|ndhD ccsA-ndhD 117330 117552 0 223 SSC 0.009217 2 6 300 236 no 1.000000 2 1.000000 NA 0.973094 60.400000 ndhD gene ndhD ndhD 117553 119082 -1 1530 SSC 0.003922 6 0 90 300 no 1.000000 2 1.000000 NA 1.000000 52.700000 IGS_120 igs ndhD|psaC ndhD-psaC 119083 119170 0 88 SSC 0.000000 0 0 248 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psaC gene psaC psaC 119171 119416 -1 246 SSC 0.000000 0 0 300 157 no 0.000000 1 0.000000 NA 1.000000 30.500000 IGS_121 igs psaC|ndhE psaC-ndhE 119417 119684 0 268 SSC 0.007463 2 0 300 45 no 1.000000 2 1.000000 NA 1.000000 45.200000 ndhE gene ndhE ndhE 119685 119990 -1 306 SSC 0.003268 1 0 68 91 no 1.000000 2 1.000000 NA 1.000000 44.600000 IGS_122 igs ndhE|ndhG ndhE-ndhG 119991 120209 0 219 SSC 0.013699 3 0 260 300 no 1.000000 2 1.000000 NA 1.000000 60.400000 ndhG gene ndhG ndhG 120210 120740 -1 531 SSC 0.000000 0 0 10 118 no 0.000000 1 0.000000 NA 1.000000 24.300000 IGS_123 igs ndhG|ndhI ndhG-ndhI 120741 121100 0 360 SSC 0.013889 5 0 300 27 no 1.000000 2 1.000000 NA 1.000000 48.800000 ndhI gene ndhI ndhI 121101 121604 -1 504 SSC 0.001984 1 0 165 20 no 1.000000 2 1.000000 NA 1.000000 44.400000 IGS_124 igs ndhI|ndhA ndhI-ndhA 121605 121697 0 93 SSC 0.032258 3 0 300 300 yes 1.000000 2 1.000000 NA 1.000000 71.000000 ndhA gene ndhA ndhA 121698 123856 -1 2159 SSC 0.003245 7 2 14 40 no 1.000000 2 1.000000 NA 0.999074 45.400000 IGS_125 igs ndhA|ndhH ndhA-ndhH 123857 123857 0 1 SSC 0.000000 0 0 63 39 no 0.000000 1 0.000000 NA 1.000000 21.700000 ndhH gene ndhH ndhH 123858 125039 -1 1182 SSC 0.005076 6 0 64 32 no 1.000000 2 1.000000 NA 1.000000 49.100000 IGS_126 igs ndhH|rps15 ndhH-rps15 125040 125130 0 91 SSC 0.021978 2 0 263 251 yes 1.000000 2 1.000000 NA 1.000000 65.100000 rps15 gene rps15 rps15 125131 125403 -1 273 SSC 0.003663 1 0 16 206 no 1.000000 2 1.000000 NA 1.000000 40.800000 IGS_127 igs rps15|ycf1 rps15-ycf1 125404 125753 0 350 SSC 0.008571 3 0 21 6 no 1.000000 2 1.000000 NA 1.000000 43.900000 ycf1 gene ycf1 ycf1 125754 131255 -1 5502 SSC 0.003999 22 0 52 300 no 1.000000 2 1.000000 NA 1.000000 43.700000 IGS_128 igs ycf1|trnN-GUU ycf1-trnN-GUU 131256 131582 0 327 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 34.300000 trnN-GUU tRNA trnN-GUU trnN-GUU 131583 131654 1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_129 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 131655 131960 0 306 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.900000 trnR-ACG tRNA trnR-ACG trnR-ACG 131961 132034 -1 74 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_130 igs trnR-ACG|rrn5S trnR-ACG-rrn5S 132035 132291 0 257 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn5S rRNA rrn5S rrn5S 132292 132412 -1 121 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_131 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 132413 132670 0 258 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 132671 132773 -1 103 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_132 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 132774 132871 0 98 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 132872 135685 -1 2814 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 37.300000 IGS_133 igs rrn23S|trnA-UGC rrn23S-trnA-UGC 135686 135837 0 152 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 135838 135872 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 136687 136724 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_136 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 136725 136788 0 64 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 136789 136823 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 137774 137810 -1 37 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_139 igs trnI-GAU|rrn16S trnI-GAU-rrn16S 137811 138104 0 294 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 138105 139595 -1 1491 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 40.000000 IGS_140 igs rrn16S|trnH-GUG rrn16S-trnH-GUG 139596 33 0 1340 IRa 0.002264 3 15 300 78 no 1.000000 2 1.000000 NA 0.988806 52.000000