feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 62 87 -1 26 LSC 0.000000 0 0 5 12 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 matK gene matK matK 377 1894 -1 1518 LSC 0.038735 133 0 2 0 no 1.000000 5 1.000000 0.038735 1.000000 72.100000 IGS_003 igs matK|trnK-UUU matK-trnK-UUU 1895 2730 0 836 LSC 0.072400 122 50 11 37 yes 1.000000 5 1.000000 0.067461 0.965311 84.300000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 2731 2767 -1 37 LSC 0.000000 0 0 18 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_004 igs trnK-UUU|rps16 trnK-UUU-rps16 2768 3463 0 696 LSC 0.096662 124 356 55 10 yes 1.000000 5 1.000000 0.091237 0.862069 78.900000 rps16 gene rps16 rps16 3464 4644 -1 1181 LSC 0.049943 128 58 2 10 yes 1.000000 5 1.000000 0.045198 0.993226 84.400000 IGS_005 igs rps16|trnQ-UUG rps16-trnQ-UUG 4645 5480 0 836 LSC 0.126828 211 231 17 24 yes 1.000000 5 1.000000 0.114916 0.978469 83.500000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 5481 5553 -1 73 LSC 0.005479 1 0 0 1 no 0.200000 2 0.500000 0.005479 1.000000 26.700000 IGS_006 igs trnQ-UUG|psbK trnQ-UUG-psbK 5554 5937 0 384 LSC 0.046432 39 33 48 3 no 1.000000 5 1.000000 0.045315 0.960938 77.400000 psbK gene psbK psbK 5938 6123 1 186 LSC 0.049462 21 0 25 1 no 1.000000 5 1.000000 0.049462 1.000000 72.300000 IGS_007 igs psbK|psbI psbK-psbI 6124 6471 0 348 LSC 0.057088 39 235 4 20 no 1.000000 5 1.000000 0.052264 1.000000 75.800000 psbI gene psbI psbI 6472 6582 1 111 LSC 0.029091 8 2 2 7 no 1.000000 5 1.000000 0.029324 0.981982 61.400000 IGS_008 igs psbI|trnS-GCU psbI-trnS-GCU 6583 6744 0 162 LSC 0.076250 27 6 11 30 no 1.000000 5 1.000000 0.077850 0.975309 77.000000 trnS-GCU tRNA trnS-GCU trnS-GCU 6745 6833 -1 89 LSC 0.027273 6 1 5 2 no 0.600000 4 0.750000 0.027273 0.988764 51.800000 IGS_009 igs trnS-GCU|trnG-GCC trnS-GCU-trnG-GCC 6834 7375 0 542 LSC 0.060456 69 151 25 48 yes 1.000000 5 1.000000 0.062477 0.959410 82.700000 trnG-GCC_part1 tRNA trnG-GCC trnG-GCC 7376 7398 1 23 LSC 0.000000 0 0 16 25 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 trnG-GCC_part2 tRNA trnG-GCC trnG-GCC 8094 8130 1 37 LSC 0.000000 0 0 33 13 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_012 igs trnG-GCC|trnR-UCU trnG-GCC-trnR-UCU 8131 8289 0 159 LSC 0.076923 23 25 70 49 no 1.000000 5 1.000000 0.076181 0.899371 78.300000 trnR-UCU tRNA trnR-UCU trnR-UCU 8290 8361 1 72 LSC 0.008333 1 0 5 1 no 0.000000 2 0.000000 0.008333 1.000000 24.300000 IGS_013 igs trnR-UCU|atpA trnR-UCU-atpA 8362 8535 0 174 LSC 0.080120 29 15 22 17 no 1.000000 5 1.000000 0.079977 0.954023 78.000000 atpA gene atpA atpA 8536 9209 -1 674 LSC 0.017066 27 6 12 9 no 1.000000 5 1.000000 0.017066 0.991098 57.900000 atpH gene atpH atpH 9210 9419 -1 210 LSC 0.017143 9 0 60 16 no 1.000000 5 1.000000 0.017143 1.000000 51.800000 IGS_015 igs atpH|atpI atpH-atpI 9420 9880 0 461 LSC 0.054222 52 203 30 12 no 1.000000 5 1.000000 0.053746 0.976139 79.500000 atpI gene atpI atpI 9881 10628 -1 748 LSC 0.025841 43 5 2 12 no 1.000000 5 1.000000 0.025841 0.993316 63.300000 IGS_016 igs atpI|rps2 atpI-rps2 10629 10772 0 144 LSC 0.044444 13 1 9 16 no 1.000000 5 1.000000 0.044716 0.993056 70.100000 rps2 gene rps2 rps2 10773 11483 -1 711 LSC 0.019972 32 0 15 14 no 1.000000 5 1.000000 0.019972 1.000000 59.400000 IGS_017 igs rps2|rpoC2 rps2-rpoC2 11484 11645 0 162 LSC 0.080124 28 6 101 0 no 1.000000 5 1.000000 0.079025 0.987654 76.500000 rpoC2 gene rpoC2 rpoC2 11646 12526 -1 881 LSC 0.035755 72 29 2 60 no 1.000000 5 1.000000 0.035656 1.000000 74.100000 rpoC1 gene rpoC1 rpoC1 12527 12653 -1 127 LSC 0.018898 6 0 14 10 no 0.600000 4 0.750000 0.018898 1.000000 45.200000 rpoB gene rpoB rpoB 12654 12938 -1 285 LSC 0.021739 15 9 0 11 no 1.000000 5 1.000000 0.021739 0.968421 56.600000 IGS_020 igs rpoB|trnC-GCA rpoB-trnC-GCA 12939 13477 0 539 LSC 0.057832 68 43 8 24 yes 1.000000 5 1.000000 0.058958 0.987013 83.300000 trnC-GCA tRNA trnC-GCA trnC-GCA 13478 13558 1 81 LSC 0.032099 6 0 5 10 no 1.000000 5 1.000000 0.032099 1.000000 61.600000 IGS_021 igs trnC-GCA|trnD-GUC trnC-GCA-trnD-GUC 13559 14346 0 788 LSC 0.076337 103 569 5 24 yes 1.000000 5 1.000000 0.062433 0.972081 78.800000 trnD-GUC tRNA trnD-GUC trnD-GUC 14347 14420 -1 74 LSC 0.010811 2 0 6 9 no 0.200000 2 0.500000 0.010811 1.000000 31.200000 IGS_022 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 14421 14707 0 287 LSC 0.057840 36 31 43 102 yes 1.000000 5 1.000000 0.058407 1.000000 81.300000 trnY-GUA tRNA trnY-GUA trnY-GUA 14708 14791 -1 84 LSC 0.000000 0 0 1 18 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_023 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 14792 14850 0 59 LSC 0.040678 6 0 85 76 no 1.000000 5 1.000000 0.040678 1.000000 74.000000 trnE-UUC tRNA trnE-UUC trnE-UUC 14851 14923 -1 73 LSC 0.000000 0 0 1 3 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_024 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 14924 15969 0 1046 LSC 0.059812 133 298 74 49 yes 1.000000 5 1.000000 0.058447 0.985660 86.200000 trnT-GGU tRNA trnT-GGU trnT-GGU 15970 16041 1 72 LSC 0.005556 1 0 1 4 no 0.200000 2 0.500000 0.005556 1.000000 26.800000 IGS_025 igs trnT-GGU|psbD trnT-GGU-psbD 16042 16521 0 480 LSC 0.073012 72 97 22 4 no 1.000000 5 1.000000 0.069147 0.952083 80.000000 psbD gene psbD psbD 16522 16902 1 381 LSC 0.026455 24 3 1 10 no 1.000000 5 1.000000 0.026455 0.992126 59.700000 psbC gene psbC psbC 16856 17654 1 799 LSC 0.029020 55 3 3 3 no 1.000000 5 1.000000 0.029020 0.996245 66.000000 IGS_027 igs psbC|trnS-UGA psbC-trnS-UGA 17655 17780 0 126 LSC 0.100265 27 2 9 7 no 1.000000 5 1.000000 0.098272 1.000000 74.900000 trnS-UGA tRNA trnS-UGA trnS-UGA 17781 17872 -1 92 LSC 0.017391 3 0 8 2 no 0.600000 4 0.750000 0.017391 1.000000 42.100000 IGS_028 igs trnS-UGA|psbZ trnS-UGA-psbZ 17873 18104 0 232 LSC 0.045259 24 9 58 8 no 1.000000 5 1.000000 0.045092 1.000000 75.600000 psbZ gene psbZ psbZ 18105 18293 1 189 LSC 0.012698 6 0 20 4 no 0.400000 3 0.666667 0.012698 1.000000 36.200000 IGS_029 igs psbZ|trnG-UCC psbZ-trnG-UCC 18294 18504 0 211 LSC 0.080411 36 8 20 4 no 1.000000 5 1.000000 0.072593 0.971564 76.600000 trnG-UCC tRNA trnG-UCC trnG-UCC 18505 18574 1 70 LSC 0.017143 3 0 1 0 no 0.200000 2 0.500000 0.017143 1.000000 35.600000 IGS_030 igs trnG-UCC|trnfM-CAU trnG-UCC-trnfM-CAU 18575 18613 0 39 LSC 0.130769 10 0 8 47 no 1.000000 5 1.000000 0.130769 1.000000 73.100000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 18614 18687 -1 74 LSC 0.005405 1 0 7 2 no 0.200000 2 0.500000 0.005405 1.000000 26.800000 IGS_031 igs trnfM-CAU|rps14 trnfM-CAU-rps14 18688 18840 0 153 LSC 0.068627 24 0 26 9 no 1.000000 5 1.000000 0.068627 1.000000 73.200000 rps14 gene rps14 rps14 18841 19143 -1 303 LSC 0.018482 13 0 1 6 no 1.000000 5 1.000000 0.018482 1.000000 51.300000 IGS_032 igs rps14|psaB rps14-psaB 19144 19235 0 92 LSC 0.050549 10 1 40 57 no 1.000000 5 1.000000 0.050549 0.989130 76.500000 psaB gene psaB psaB 19236 19367 -1 132 LSC 0.012121 4 0 6 2 no 0.600000 4 0.750000 0.012121 1.000000 39.400000 psaA gene psaA psaA 19368 20161 -1 794 LSC 0.017402 33 1 29 8 no 1.000000 5 1.000000 0.017402 0.998741 57.500000 IGS_034 igs psaA|ycf3 psaA-ycf3 20162 20663 0 502 LSC 0.031772 35 15 24 33 no 1.000000 5 1.000000 0.031452 0.978088 69.400000 ycf3 gene ycf3 ycf3 20664 22168 -1 1505 LSC 0.024438 84 43 4 12 no 1.000000 5 1.000000 0.024480 0.976080 64.700000 IGS_035 igs ycf3|trnS-GGA ycf3-trnS-GGA 22169 22516 0 348 LSC 0.067059 52 46 0 77 no 1.000000 5 1.000000 0.068004 0.977011 78.200000 trnS-GGA tRNA trnS-GGA trnS-GGA 22517 22603 1 87 LSC 0.009195 2 0 8 3 no 0.200000 2 0.500000 0.009195 1.000000 29.700000 IGS_036 igs trnS-GGA|rps4 trnS-GGA-rps4 22604 22879 0 276 LSC 0.055072 35 0 0 5 no 1.000000 5 1.000000 0.055072 1.000000 72.500000 rps4 gene rps4 rps4 22880 23485 -1 606 LSC 0.028218 40 0 9 6 no 1.000000 5 1.000000 0.028218 1.000000 65.100000 IGS_037 igs rps4|trnT-UGU rps4-trnT-UGU 23486 23831 0 346 LSC 0.046724 36 15 53 9 no 1.000000 5 1.000000 0.045991 0.997110 77.800000 trnT-UGU tRNA trnT-UGU trnT-UGU 23832 23904 -1 73 LSC 0.016438 3 0 6 1 no 0.600000 4 0.750000 0.016438 1.000000 42.600000 IGS_038 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 23905 24752 0 848 LSC 0.101725 167 296 3 64 yes 1.000000 5 1.000000 0.096091 0.971698 81.400000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 24753 24787 1 35 LSC 0.000000 0 0 0 29 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 25184 25233 1 50 LSC 0.000000 0 0 1 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_041 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 25234 25421 0 188 LSC 0.083156 34 39 51 74 no 1.000000 5 1.000000 0.084807 0.994681 80.400000 trnF-GAA tRNA trnF-GAA trnF-GAA 25422 25494 1 73 LSC 0.000000 0 0 5 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_042 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 25495 26058 0 564 LSC 0.067376 79 279 78 3 yes 1.000000 5 1.000000 0.069738 0.996454 81.300000 ndhJ gene ndhJ ndhJ 26059 26220 -1 162 LSC 0.036008 11 160 8 3 no 1.000000 5 1.000000 0.036181 0.993827 62.300000 IGS_043 igs ndhJ|trnV-UAC ndhJ-trnV-UAC 26221 26486 0 266 LSC 0.065038 40 5 3 46 no 1.000000 5 1.000000 0.064269 0.996241 74.800000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 26487 26523 -1 37 LSC 0.000000 0 0 8 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 27107 27145 -1 39 LSC 0.000000 0 0 11 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_046 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 27146 27325 0 180 LSC 0.046111 19 5 50 90 no 1.000000 5 1.000000 0.045365 1.000000 77.800000 trnM-CAU tRNA trnM-CAU trnM-CAU 27326 27398 1 73 LSC 0.000000 0 0 8 17 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_047 igs trnM-CAU|atpE trnM-CAU-atpE 27399 27480 0 82 LSC 0.050000 9 8 81 1 no 1.000000 5 1.000000 0.045811 0.975610 77.500000 atpE gene atpE atpE 27481 27885 -1 405 LSC 0.014074 14 8 1 12 no 1.000000 5 1.000000 0.013660 1.000000 52.800000 atpB gene atpB atpB 27885 29401 -1 1517 LSC 0.020950 76 23 3 10 no 1.000000 5 1.000000 0.020950 0.984838 61.000000 IGS_049 igs atpB|rbcL atpB-rbcL 29402 30116 0 715 LSC 0.071841 105 87 7 10 yes 1.000000 5 1.000000 0.067731 0.998601 84.200000 rbcL gene rbcL rbcL 30117 31588 1 1472 LSC 0.016963 60 10 12 0 no 1.000000 5 1.000000 0.016963 0.993207 57.100000 IGS_050 igs rbcL|accD rbcL-accD 31589 31810 0 222 LSC 0.036986 18 7 8 9 no 1.000000 5 1.000000 0.037348 0.986486 68.100000 accD gene accD accD 31811 33268 1 1458 LSC 0.026749 87 9 25 5 no 1.000000 5 1.000000 0.026400 1.000000 64.400000 IGS_051 igs accD|psaI accD-psaI 33269 33762 0 494 LSC 0.059890 62 54 12 10 yes 1.000000 5 1.000000 0.060071 0.979757 82.200000 psaI gene psaI psaI 33763 33887 1 125 LSC 0.010811 3 14 35 4 no 0.200000 2 0.500000 0.010811 0.888000 32.700000 IGS_052 igs psaI|ycf4 psaI-ycf4 33888 34264 0 377 LSC 0.055585 47 2 40 21 no 1.000000 5 1.000000 0.055632 0.997347 76.200000 ycf4 gene ycf4 ycf4 34265 34372 1 108 LSC 0.026852 6 0 7 20 no 1.000000 5 1.000000 0.026852 1.000000 57.100000 IGS_053 igs ycf4|psbJ ycf4-psbJ 34373 34670 0 298 LSC 0.063412 40 158 8 27 no 1.000000 5 1.000000 0.068173 0.996644 75.800000 psbJ gene psbJ psbJ 34671 34793 -1 123 LSC 0.021138 6 0 10 74 no 0.600000 4 0.750000 0.021138 1.000000 46.400000 IGS_054 igs psbJ|psbL psbJ-psbL 34794 34913 0 120 LSC 0.033333 10 1 4 9 no 1.000000 5 1.000000 0.033571 0.991667 64.000000 psbL gene psbL psbL 34914 35022 -1 109 LSC 0.022018 6 0 0 54 no 0.400000 3 0.666667 0.022018 1.000000 43.000000 psbF gene psbF psbF 35023 35140 -1 118 LSC 0.007207 2 7 34 14 no 0.400000 3 0.666667 0.007207 0.940678 36.700000 IGS_056 igs psbF|psbE psbF-psbE 35141 35150 0 10 LSC 0.000000 0 0 44 4 no 0.000000 1 0.000000 NA 1.000000 19.100000 psbE gene psbE psbE 35151 35402 -1 252 LSC 0.017063 10 0 54 1 no 0.400000 3 0.666667 0.017063 1.000000 39.000000 IGS_057 igs psbE|petL psbE-petL 35403 36065 0 663 LSC 0.046010 68 5 58 32 no 1.000000 5 1.000000 0.045396 0.995475 80.100000 petL gene petL petL 36066 36161 1 96 LSC 0.022917 5 0 10 2 no 0.600000 4 0.750000 0.022917 1.000000 47.000000 IGS_058 igs petL|petG petL-petG 36162 36176 0 15 LSC 0.106667 4 0 10 22 no 0.400000 3 0.666667 NA 1.000000 62.000000 petG gene petG petG 36177 36239 1 63 LSC 0.034921 5 0 1 2 no 0.600000 4 0.750000 0.034921 1.000000 55.700000 IGS_059 igs petG|trnW-CCA petG-trnW-CCA 36240 36369 0 130 LSC 0.057143 16 12 13 31 no 1.000000 5 1.000000 0.057456 0.915385 76.500000 trnW-CCA tRNA trnW-CCA trnW-CCA 36370 36443 -1 74 LSC 0.016216 3 0 3 6 no 0.400000 3 0.666667 0.016216 1.000000 38.800000 IGS_060 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 36444 36512 0 69 LSC 0.098551 15 0 28 22 no 1.000000 5 1.000000 0.098551 1.000000 74.200000 trnP-UGG tRNA trnP-UGG trnP-UGG 36513 36587 -1 75 LSC 0.008000 1 0 4 2 no 0.000000 2 0.000000 0.008000 1.000000 24.200000 IGS_061 igs trnP-UGG|psaJ trnP-UGG-psaJ 36588 36930 0 343 LSC 0.076190 58 29 52 25 no 1.000000 5 1.000000 0.077879 1.000000 80.600000 psaJ gene psaJ psaJ 36931 37065 1 135 LSC 0.024444 7 0 17 6 no 1.000000 5 1.000000 0.024444 1.000000 55.400000 IGS_062 igs psaJ|rpl33 psaJ-rpl33 37066 37441 0 376 LSC 0.077128 59 93 18 8 no 1.000000 5 1.000000 0.070781 0.997340 79.300000 rpl33 gene rpl33 rpl33 37442 37642 1 201 LSC 0.024876 12 0 0 1 no 1.000000 5 1.000000 0.024876 1.000000 56.200000 IGS_063 igs rpl33|rps18 rpl33-rps18 37643 37829 0 187 LSC 0.043478 16 5 24 15 no 1.000000 5 1.000000 0.042564 0.983957 71.600000 rps18 gene rps18 rps18 37830 38120 1 291 LSC 0.015808 11 0 15 3 no 1.000000 5 1.000000 0.015808 1.000000 49.600000 IGS_064 igs rps18|rpl20 rps18-rpl20 38121 38370 0 250 LSC 0.041803 23 10 6 6 no 1.000000 5 1.000000 0.042050 0.976000 72.300000 rpl20 gene rpl20 rpl20 38371 38772 -1 402 LSC 0.031343 31 0 0 36 no 1.000000 5 1.000000 0.031343 1.000000 63.400000 IGS_065 igs rpl20|rps12 rpl20-rps12 38773 39549 0 777 LSC 0.037646 62 22 51 57 no 1.000000 5 1.000000 0.036759 0.989704 77.600000 rps12_part1 gene rps12 rps12 39550 39663 -1 114 LSC 0.008772 2 0 20 0 no 0.200000 3 0.333333 0.008772 1.000000 28.600000 IGS_066 igs rps12|clpP rps12-clpP 39664 39825 0 162 LSC 0.041358 14 0 46 2 no 1.000000 5 1.000000 0.041358 1.000000 67.100000 clpP gene clpP clpP 39826 42163 -1 2338 LSC 0.032075 159 343 10 1 no 1.000000 5 1.000000 0.031918 0.930710 68.500000 IGS_067 igs clpP|psbB clpP-psbB 42164 42793 0 630 LSC 0.096032 120 31 55 50 yes 1.000000 5 1.000000 0.084037 0.998413 88.000000 psbB gene psbB psbB 42794 42909 1 116 LSC 0.013793 4 0 2 6 no 0.200000 2 0.500000 0.013793 1.000000 33.200000 petB gene petB petB 42910 44208 1 1299 LSC 0.033072 96 38 6 1 no 1.000000 5 1.000000 0.032867 0.980754 70.800000 IGS_069 igs petB|petD petB-petD 44209 44389 0 181 LSC 0.049171 20 0 19 11 no 1.000000 5 1.000000 0.049171 1.000000 73.000000 petD gene petD petD 44390 45418 1 1029 LSC 0.029051 71 36 24 5 no 1.000000 5 1.000000 0.029136 0.983479 69.400000 IGS_070 igs petD|rpoA petD-rpoA 45419 45598 0 180 LSC 0.079888 30 1 1 7 no 1.000000 5 1.000000 0.079888 0.994444 73.100000 rpoA gene rpoA rpoA 45599 45959 -1 361 LSC 0.044729 36 10 3 6 no 1.000000 5 1.000000 0.044729 0.972299 74.000000 IGS_071 igs rpoA|rps11 rpoA-rps11 45960 46050 0 91 LSC 0.061446 11 13 12 0 no 1.000000 5 1.000000 0.060272 0.912088 75.100000 rps11 gene rps11 rps11 46051 46467 -1 417 LSC 0.025420 26 0 3 8 no 1.000000 5 1.000000 0.025420 1.000000 59.400000 IGS_072 igs rps11|rpl36 rps11-rpl36 46468 46538 0 71 LSC 0.074648 11 0 11 10 no 1.000000 5 1.000000 0.074648 1.000000 73.200000 rpl36 gene rpl36 rpl36 46539 46652 -1 114 LSC 0.028947 7 0 17 3 no 1.000000 5 1.000000 0.028947 1.000000 58.400000 IGS_073 igs rpl36|infA rpl36-infA 46653 46767 0 115 LSC 0.071304 18 1 8 48 no 1.000000 5 1.000000 0.071533 1.000000 74.100000 infA gene infA infA 46768 47001 -1 234 LSC 0.010256 6 0 3 2 no 0.400000 3 0.666667 0.010256 1.000000 34.200000 IGS_074 igs infA|rps8 infA-rps8 47002 47121 0 120 LSC 0.063056 17 8 53 40 no 1.000000 5 1.000000 0.062515 0.950000 80.000000 rps8 gene rps8 rps8 47122 47517 -1 396 LSC 0.026010 24 0 7 2 no 1.000000 5 1.000000 0.026010 1.000000 58.900000 IGS_075 igs rps8|rpl14 rps8-rpl14 47518 47715 0 198 LSC 0.102632 38 32 7 6 no 1.000000 5 1.000000 0.088873 0.949495 76.700000 rpl14 gene rpl14 rpl14 47716 48084 -1 369 LSC 0.020596 18 0 2 19 no 1.000000 5 1.000000 0.020596 1.000000 54.500000 IGS_076 igs rpl14|rpl16 rpl14-rpl16 48085 48208 0 124 LSC 0.032258 10 0 14 6 no 1.000000 5 1.000000 0.032258 1.000000 62.500000 rpl16 gene rpl16 rpl16 48209 49703 -1 1495 LSC 0.036532 121 119 1 7 no 1.000000 5 1.000000 0.035168 0.995318 76.000000 IGS_077 igs rpl16|rps3 rpl16-rps3 49704 49883 0 180 LSC 0.084571 33 14 41 26 no 1.000000 5 1.000000 0.083028 0.972222 79.300000 rps3 gene rps3 rps3 49884 50540 -1 657 LSC 0.019635 30 0 5 11 no 1.000000 5 1.000000 0.019635 1.000000 58.700000 IGS_078 igs rps3|rpl22 rps3-rpl22 50541 50594 0 54 LSC 0.069388 7 6 49 1 no 0.600000 4 0.750000 0.069898 0.907407 67.700000 rpl22 gene rpl22 rpl22 50595 50984 -1 390 LSC 0.029744 26 0 4 11 no 1.000000 5 1.000000 0.029744 1.000000 61.400000 IGS_079 igs rpl22|rps19 rpl22-rps19 50985 51141 0 157 LSC 0.043312 15 6 4 27 no 0.600000 4 0.750000 0.042570 1.000000 66.300000 rps19 gene rps19 rps19 51142 51420 -1 279 LSC 0.006810 4 0 9 4 no 0.400000 3 0.666667 0.006810 1.000000 31.400000 IGS_080 igs rps19|trnH-GUG rps19-trnH-GUG 51421 51573 0 153 LSC 0.037762 12 18 46 19 no 1.000000 5 1.000000 0.035752 0.934641 69.200000 trnH-GUG tRNA trnH-GUG trnH-GUG 51574 51648 1 75 LSC 0.013333 2 0 20 28 no 0.400000 3 0.666667 0.013333 1.000000 37.100000 IGS_081 igs trnH-GUG|rpl2 trnH-GUG-rpl2 51649 51691 0 43 LSC 0.009302 1 0 31 81 no 0.200000 2 0.500000 0.009302 1.000000 31.900000 rpl2 gene rpl2 rpl2 51692 53171 -1 1480 LSC 0.010068 35 56 14 100 no 1.000000 5 1.000000 0.010053 1.000000 56.800000 IGS_082 igs rpl2|rpl23 rpl2-rpl23 53172 53195 0 24 IRb 0.000000 0 0 41 76 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 rpl23 gene rpl23 rpl23 53196 53477 -1 282 IRb 0.011348 8 0 65 16 no 1.000000 5 1.000000 0.011348 1.000000 47.400000 IGS_083 igs rpl23|trnI-CAU rpl23-trnI-CAU 53478 53642 0 165 IRb 0.026667 10 0 11 75 no 1.000000 5 1.000000 0.026667 1.000000 57.900000 trnI-CAU tRNA trnI-CAU trnI-CAU 53643 53716 -1 74 IRb 0.000000 0 0 6 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_084 igs trnI-CAU|ycf2 trnI-CAU-ycf2 53717 53784 0 68 IRb 0.050000 8 0 80 22 no 1.000000 5 1.000000 0.050000 1.000000 74.200000 ycf2 gene ycf2 ycf2 53785 60558 1 6774 IRb 0.014831 225 350 13 80 no 1.000000 5 1.000000 0.014501 0.989814 54.900000 IGS_085 igs ycf2|trnL-CAA ycf2-trnL-CAA 60559 61368 0 810 IRb 0.024947 44 224 9 18 no 1.000000 5 1.000000 0.025468 0.976543 66.100000 trnL-CAA tRNA trnL-CAA trnL-CAA 61369 61449 -1 81 IRb 0.004938 1 0 8 13 no 0.200000 2 0.500000 0.004938 1.000000 26.900000 IGS_086 igs trnL-CAA|ndhB trnL-CAA-ndhB 61450 62003 0 554 IRb 0.018498 21 215 62 2 no 1.000000 5 1.000000 0.020438 0.985560 59.400000 ndhB gene ndhB ndhB 62004 63247 -1 1244 IRb 0.013209 38 271 21 67 no 1.000000 5 1.000000 0.012935 0.991961 59.700000 IGS_087 igs ndhB|rps7 ndhB-rps7 63248 63445 0 198 IRb 0.016667 7 0 23 12 no 0.600000 4 0.750000 0.016667 1.000000 42.800000 rps7 gene rps7 rps7 63446 63913 -1 468 IRb 0.005983 7 0 9 177 no 0.600000 4 0.750000 0.005983 1.000000 38.700000 IGS_088 igs rps7|rps12 rps7-rps12 63914 63971 0 58 IRb 0.000000 0 0 90 119 no 0.000000 1 0.000000 0.000000 1.000000 25.500000 rps12_part2 gene rps12 rps12 63972 64770 -1 799 IRb 0.007259 14 0 148 27 no 1.000000 5 1.000000 0.007259 1.000000 51.200000 IGS_089 igs rps12|trnV-GAC rps12-trnV-GAC 64771 65962 0 1192 IRb 0.018465 50 55 11 35 no 1.000000 5 1.000000 0.018631 0.994966 63.400000 trnV-GAC tRNA trnV-GAC trnV-GAC 65963 66034 1 72 IRb 0.011111 2 0 37 2 no 0.200000 2 0.500000 0.011111 1.000000 31.100000 IGS_090 igs trnV-GAC|rrn16 trnV-GAC-rrn16 66035 66270 0 236 IRb 0.020851 11 1 26 63 no 1.000000 5 1.000000 0.020851 0.995763 55.000000 rrn16 rRNA rrn16 rrn16 66271 67760 1 1490 IRb 0.003221 12 0 36 30 no 1.000000 5 1.000000 0.003221 1.000000 48.500000 IGS_091 igs rrn16|trnI-GAU rrn16-trnI-GAU 67761 68067 0 307 IRb 0.027333 16 7 86 168 no 1.000000 5 1.000000 0.027333 0.977199 64.900000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 68068 68109 1 42 IRb 0.000000 0 0 0 126 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 68931 68965 1 35 IRb 0.000000 0 0 23 4 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_094 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 68966 69036 0 71 IRb 0.012500 2 7 58 183 no 0.400000 3 0.666667 0.012500 0.901408 42.300000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 69037 69074 1 38 IRb 0.000000 0 0 46 145 no 0.000000 1 0.000000 0.000000 1.000000 22.200000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 69881 69915 1 35 IRb 0.000000 0 0 129 15 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_097 igs trnA-UGC|rrn23 trnA-UGC-rrn23 69916 70062 0 147 IRb 0.017931 5 2 164 6 no 1.000000 5 1.000000 0.017931 0.986395 51.500000 rrn23 rRNA rrn23 rrn23 70063 72869 1 2807 IRb 0.002779 19 0 62 66 no 1.000000 5 1.000000 0.002779 1.000000 47.800000 IGS_098 igs rrn23|rrn4.5 rrn23-rrn4.5 72870 72967 0 98 IRb 0.004082 1 0 300 63 no 0.200000 2 0.500000 0.004082 1.000000 30.300000 rrn4.5 rRNA rrn4.5 rrn4.5 72968 73070 1 103 IRb 0.003883 1 0 31 22 no 0.200000 2 0.500000 0.003883 1.000000 27.100000 IGS_099 igs rrn4.5|rrn5 rrn4.5-rrn5 73071 73277 0 207 IRb 0.049114 22 2 39 12 no 1.000000 5 1.000000 0.047225 0.995169 74.000000 rrn5 rRNA rrn5 rrn5 73278 73398 1 121 IRb 0.006612 2 0 6 2 no 0.400000 3 0.666667 0.006612 1.000000 31.400000 IGS_100 igs rrn5|trnR-ACG rrn5-trnR-ACG 73399 73644 0 246 IRb 0.021951 13 0 32 94 no 1.000000 5 1.000000 0.021951 1.000000 56.400000 trnR-ACG tRNA trnR-ACG trnR-ACG 73645 73718 1 74 IRb 0.000000 0 0 28 20 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_101 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 73719 74232 0 514 IRb 0.040272 43 119 102 32 no 1.000000 5 1.000000 0.032655 1.000000 77.700000 trnN-GUU tRNA trnN-GUU trnN-GUU 74233 74304 -1 72 IRb 0.022222 4 0 33 5 no 0.600000 4 0.750000 0.022222 1.000000 47.300000 IGS_102 igs trnN-GUU|ycf1 trnN-GUU-ycf1 74305 74657 0 353 IRb 0.028025 22 47 15 56 no 1.000000 5 1.000000 0.028209 0.889518 62.100000 ycf1 gene ycf1 ycf1 74658 80009 1 5352 SSC 0.049429 590 237 11 5 no 1.000000 5 1.000000 0.049247 0.994955 77.700000 IGS_103 igs ycf1|rps15 ycf1-rps15 80010 80269 0 260 SSC 0.071373 39 5 1 12 no 1.000000 5 1.000000 0.071373 0.980769 74.300000 rps15 gene rps15 rps15 80270 80542 1 273 SSC 0.022711 15 0 4 10 no 1.000000 5 1.000000 0.022711 1.000000 54.900000 IGS_104 igs rps15|ndhH rps15-ndhH 80543 80642 0 100 SSC 0.064000 14 53 1 4 no 1.000000 5 1.000000 0.062754 1.000000 75.500000 ndhH gene ndhH ndhH 80643 81052 1 410 SSC 0.033995 28 401 19 0 no 1.000000 5 1.000000 0.034739 0.982927 63.400000 IGS_105 igs ndhH|ndhA ndhH-ndhA 81053 81060 0 8 SSC 0.200000 4 0 0 2 no 0.200000 2 0.500000 NA 1.000000 57.500000 ndhA gene ndhA ndhA 81061 81460 1 400 SSC 0.053213 49 68 2 2 no 1.000000 5 1.000000 0.054262 0.972500 79.100000 IGS_106 igs ndhA|ndhG ndhA-ndhG 81461 81735 0 275 SSC 0.066667 37 103 2 3 no 1.000000 5 1.000000 0.066401 0.992727 75.300000 ndhG gene ndhG ndhG 81736 82277 1 542 SSC 0.034151 38 475 3 2 no 1.000000 5 1.000000 0.050589 0.977860 66.900000 IGS_107 igs ndhG|ccsA ndhG-ccsA 82278 82823 0 546 SSC 0.071034 84 75 6 3 yes 1.000000 5 1.000000 0.068409 0.950549 81.700000 ccsA gene ccsA ccsA 82824 83246 -1 423 SSC 0.042080 42 0 5 6 no 1.000000 5 1.000000 0.042080 1.000000 71.800000 IGS_108 igs ccsA|trnL-UAG ccsA-trnL-UAG 83247 83344 0 98 SSC 0.058844 12 8 10 89 no 1.000000 5 1.000000 0.055533 1.000000 79.000000 trnL-UAG tRNA trnL-UAG trnL-UAG 83345 83424 -1 80 SSC 0.000000 0 0 3 9 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_109 igs trnL-UAG|rpl32 trnL-UAG-rpl32 83425 84000 0 576 SSC 0.073860 84 159 83 4 yes 1.000000 5 1.000000 0.073178 0.973958 82.300000 rpl32 gene rpl32 rpl32 84001 84174 -1 174 SSC 0.036782 14 6 4 5 no 1.000000 5 1.000000 0.037213 1.000000 68.500000 IGS_110 igs rpl32|trnN-GUU rpl32-trnN-GUU 84175 85041 0 867 IRa 0.030941 56 78 28 15 no 1.000000 5 1.000000 0.029160 0.948097 70.900000 trnN-GUU tRNA trnN-GUU trnN-GUU 85042 85113 1 72 IRa 0.022222 4 0 5 33 no 0.600000 4 0.750000 0.022222 1.000000 47.300000 IGS_111 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 85114 85627 0 514 IRa 0.040272 43 119 32 102 no 1.000000 5 1.000000 0.032655 1.000000 77.700000 trnR-ACG tRNA trnR-ACG trnR-ACG 85628 85701 -1 74 IRa 0.000000 0 0 20 28 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_112 igs trnR-ACG|rrn5 trnR-ACG-rrn5 85702 85947 0 246 IRa 0.021951 13 0 94 32 no 1.000000 5 1.000000 0.021951 1.000000 56.400000 rrn5 rRNA rrn5 rrn5 85948 86068 -1 121 IRa 0.006612 2 0 2 6 no 0.400000 3 0.666667 0.006612 1.000000 31.400000 IGS_113 igs rrn5|rrn4.5 rrn5-rrn4.5 86069 86275 0 207 IRa 0.051047 23 2 12 39 no 1.000000 5 1.000000 0.049171 0.995169 74.400000 rrn4.5 rRNA rrn4.5 rrn4.5 86276 86378 -1 103 IRa 0.003883 1 0 22 31 no 0.200000 2 0.500000 0.003883 1.000000 27.100000 IGS_114 igs rrn4.5|rrn23 rrn4.5-rrn23 86379 86476 0 98 IRa 0.004082 1 0 63 300 no 0.200000 2 0.500000 0.004082 1.000000 30.300000 rrn23 rRNA rrn23 rrn23 86477 89283 -1 2807 IRa 0.002779 19 0 66 62 no 1.000000 5 1.000000 0.002779 1.000000 47.800000 IGS_115 igs rrn23|trnA-UGC rrn23-trnA-UGC 89284 89430 0 147 IRa 0.017931 5 2 6 164 no 1.000000 5 1.000000 0.017931 0.986395 51.500000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 89431 89465 -1 35 IRa 0.000000 0 0 15 129 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 90272 90309 -1 38 IRa 0.000000 0 0 145 46 no 0.000000 1 0.000000 0.000000 1.000000 22.200000 IGS_118 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 90310 90380 0 71 IRa 0.012500 2 7 183 58 no 0.400000 3 0.666667 0.012500 0.901408 42.300000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 90381 90415 -1 35 IRa 0.000000 0 0 4 23 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 91237 91278 -1 42 IRa 0.000000 0 0 126 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_121 igs trnI-GAU|rrn16 trnI-GAU-rrn16 91279 91585 0 307 IRa 0.027333 16 7 168 86 no 1.000000 5 1.000000 0.027333 0.977199 64.900000 rrn16 rRNA rrn16 rrn16 91586 93075 -1 1490 IRa 0.003221 12 0 30 36 no 1.000000 5 1.000000 0.003221 1.000000 48.500000 IGS_122 igs rrn16|trnV-GAC rrn16-trnV-GAC 93076 93311 0 236 IRa 0.020851 11 1 63 26 no 1.000000 5 1.000000 0.020851 0.995763 55.000000 trnV-GAC tRNA trnV-GAC trnV-GAC 93312 93383 -1 72 IRa 0.011111 2 0 2 37 no 0.200000 2 0.500000 0.011111 1.000000 31.100000 IGS_123 igs trnV-GAC|rps12 trnV-GAC-rps12 93384 94575 0 1192 IRa 0.017960 49 58 35 11 no 1.000000 5 1.000000 0.017772 0.994966 63.400000 rps12_part2 gene rps12 rps12 94576 95374 1 799 IRa 0.007259 14 0 27 148 no 1.000000 5 1.000000 0.007259 1.000000 51.200000 IGS_124 igs rps12|rps7 rps12-rps7 95375 95432 0 58 IRa 0.000000 0 0 119 90 no 0.000000 1 0.000000 0.000000 1.000000 25.500000 rps7 gene rps7 rps7 95433 95900 1 468 IRa 0.005983 7 0 177 9 no 0.600000 4 0.750000 0.005983 1.000000 38.700000 IGS_125 igs rps7|ndhB rps7-ndhB 95901 96098 0 198 IRa 0.016667 7 0 12 23 no 0.600000 4 0.750000 0.016667 1.000000 42.800000 ndhB gene ndhB ndhB 96099 97342 1 1244 IRa 0.015913 42 271 67 21 no 1.000000 5 1.000000 0.013574 0.991961 61.400000 IGS_126 igs ndhB|trnL-CAA ndhB-trnL-CAA 97343 97896 0 554 IRa 0.018498 21 215 2 62 no 1.000000 5 1.000000 0.020438 0.985560 59.400000 trnL-CAA tRNA trnL-CAA trnL-CAA 97897 97977 1 81 IRa 0.004938 1 0 13 8 no 0.200000 2 0.500000 0.004938 1.000000 26.900000 IGS_127 igs trnL-CAA|ycf2 trnL-CAA-ycf2 97978 98787 0 810 IRa 0.024947 44 224 18 9 no 1.000000 5 1.000000 0.025468 0.976543 66.100000 ycf2 gene ycf2 ycf2 98788 105561 -1 6774 IRa 0.014831 225 351 80 13 no 1.000000 5 1.000000 0.014501 0.989814 54.900000 IGS_128 igs ycf2|trnI-CAU ycf2-trnI-CAU 105562 105629 0 68 IRa 0.050000 8 0 22 80 no 1.000000 5 1.000000 0.050000 1.000000 74.200000 trnI-CAU tRNA trnI-CAU trnI-CAU 105630 105703 1 74 IRa 0.000000 0 0 1 6 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_129 igs trnI-CAU|rpl23 trnI-CAU-rpl23 105704 105868 0 165 IRa 0.026667 10 0 75 11 no 1.000000 5 1.000000 0.026667 1.000000 57.900000 rpl23 gene rpl23 rpl23 105869 106150 1 282 IRa 0.011348 8 0 16 65 no 1.000000 5 1.000000 0.011348 1.000000 47.400000 IGS_130 igs rpl23|rpl2 rpl23-rpl2 106151 106174 0 24 IRa 0.000000 0 0 76 41 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 rpl2 gene rpl2 rpl2 106175 106385 1 211 IRa 0.007583 4 9 100 10 no 0.400000 3 0.666667 0.007667 1.000000 37.800000 IGS_131 igs rpl2|trnK-UUU rpl2-trnK-UUU 106386 61 0 61 LSC 0.121311 13 37 3 38 no 1.000000 5 1.000000 0.116872 1.000000 75.200000