primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score P417_t002-P417_t003_p1 P417_t002-P417_t003 1 GCTACCAATTTCGCCACATC TGGAGACCTACGTTCTACCA 20 20 50.0 50.0 57.5 57.1 0.0 0.0 1.360335 5895 6546 707-732 1.000000 79.7 P417_t002-P417_t003_p2 P417_t002-P417_t003 2 TACCAATTTCGCCACATCCG TGGAGACCTACGTTCTACCA 20 20 50.0 50.0 58.6 57.1 0.0 0.0 1.510575 5895 6546 705-730 1.000000 78.5 P417_t002-P417_t003_p3 P417_t002-P417_t003 3 GCTACCAATTTCGCCACATC TGGAGACCTACGTTCTACCAA 20 21 50.0 47.6 57.5 57.8 0.0 0.0 1.634414 5895 6546 707-732 1.000000 77.5 P417_t002-P417_t003_p4 P417_t002-P417_t003 4 GCTACCAATTTCGCCACATC TTGGAGACCTACGTTCTACCA 20 21 50.0 47.6 57.5 57.8 0.0 0.0 1.634414 5895 6546 708-733 1.000000 77.5 P417_t002-P417_t003_p5 P417_t002-P417_t003 5 GGCTACCAATTTCGCCACAT TGGAGACCTACGTTCTACCA 20 20 50.0 50.0 58.9 57.1 0.0 0.0 1.782157 5895 6546 708-733 1.000000 76.3 rpoA_p1 rpoA 1 CCCACCACCAGAAACATCAA ACATAATGGGTGTCGTGCTC 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.030220 20330 21652 2136-2136 0.750000 75.9 rpoA_p2 rpoA 2 CCCACCACCAGAAACATCAA AAATGGACCTGGAAACGGTC 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.100407 20330 21652 2229-2229 0.500000 63.7 rpoA_p3 rpoA 3 CCCACCACCAGAAACATCAA CGACGTCACATACAGGGTTT 20 20 50.0 50.0 58.0 57.9 0.0 17.2 0.080591 20330 21652 2657-2657 0.500000 63.6 rpoA_p4 rpoA 4 CCCACCACCAGAAACATCAA GGCAGGAAGTAGCGGTTTTA 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.109581 20330 21652 2349-2349 0.500000 63.6 rpoA_p5 rpoA 5 CCCACCACCAGAAACATCAA ACGGTCGTGAAATTGCCATA 20 20 50.0 45.0 58.0 57.9 0.0 0.0 0.108114 20330 21652 2215-2215 0.500000 61.8 ycf34_p1 ycf34 1 GGACTGAAGATCCGTGTGTC CTGTTGCGTTTGCCCTATTG 20 20 55.0 50.0 58.0 58.0 0.0 0.0 0.021077 34784 35035 935-966 1.000000 91.8 ycf34_p2 ycf34 2 GCAATGGACTGAAGATCCGT CTGTTGCGTTTGCCCTATTG 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.048585 34784 35035 940-971 1.000000 91.6 ycf34_p3 ycf34 3 GGACTGAAGATCCGTGTGTC CCCATACTGTTTGCAGGTGT 20 20 55.0 50.0 58.0 58.1 0.0 0.0 0.092631 34784 35035 1174-1205 1.000000 90.5 ycf34_p4 ycf34 4 GGACTGAAGATCCGTGTGTC TGCACCGTGTAATGCGATAA 20 20 55.0 45.0 58.0 58.0 0.0 0.0 0.013871 34784 35035 1274-1305 0.750000 80.6 ycf34_p5 ycf34 5 GCAATGGACTGAAGATCCGT TGCACCGTGTAATGCGATAA 20 20 50.0 45.0 58.0 58.0 0.0 0.0 0.041378 34784 35035 1279-1310 0.750000 80.3 chlI_p1 chlI 1 CCATGGGTAGAACCACTTCG CGGTGATTTCTTTGCAGCTG 20 20 55.0 50.0 58.0 58.0 2.8 10.1 0.051037 37972 39207 2350-2354 0.750000 76.1 chlI_p2 chlI 2 TGGGATTTACGTGCTCCATG CGGTGATTTCTTTGCAGCTG 20 20 50.0 50.0 58.0 58.0 13.0 10.1 0.063819 37972 39207 2365-2369 0.750000 75.9 chlI_p3 chlI 3 GATTTACGTGCTCCATGGGT CGGTGATTTCTTTGCAGCTG 20 20 50.0 50.0 58.0 58.0 13.0 10.1 0.065249 37972 39207 2362-2366 0.750000 75.9 chlI_p4 chlI 4 CCATGGGTAGAACCACTTCG GTGCCAAGATGAAAATCGCC 20 20 55.0 50.0 58.0 58.1 2.8 0.0 0.110859 37972 39207 2372-2381 0.750000 75.4 chlI_p5 chlI 5 CCATGGGTAGAACCACTTCG GCCAAGATGAAAATCGCCAC 20 20 55.0 50.0 58.0 58.1 2.8 0.0 0.110859 37972 39207 2370-2373 0.500000 62.6 chlB_p1 chlB 1 AGACGTCTAGTGGAACGACT ACACGCGCCTAGTTTTTACA 20 20 50.0 45.0 57.8 58.1 18.5 5.7 0.313485 41249 42769 2325-2327 1.000000 85.6 chlB_p2 chlB 2 AGACGTCTAGTGGAACGACT GCCACAAATTGCTCGTGATC 20 20 50.0 50.0 57.8 58.1 18.5 0.0 0.281717 41249 42769 2193-2194 0.750000 74.5 chlB_p3 chlB 3 CCGATTGCTCTACCACTGAG GCCACAAATTGCTCGTGATC 20 20 55.0 50.0 57.8 58.1 0.0 0.0 0.315670 41249 42769 2435-2436 0.750000 74.5 chlB_p4 chlB 4 AGACGTCTAGTGGAACGACT AAAGCCACAAATTGCTCGTG 20 20 50.0 45.0 57.8 57.9 18.5 0.0 0.320550 41249 42769 2196-2197 0.750000 74.2 chlB_p5 chlB 5 AGACGTCTAGTGGAACGACT ATTAGGCTCCGTGCTATTGC 20 20 50.0 50.0 57.8 58.1 18.5 0.0 0.297719 41249 42769 2039-2040 0.500000 61.1 P417_t011-P417_t012_p1 P417_t011-P417_t012 1 CGGAAACCATTACTTTATCCT TACCAAACTGCGCTACATCC 21 20 38.1 50.0 53.3 58.0 0.0 9.7 5.711672 44413 44584 226-230 1.000000 49.7 P417_t011-P417_t012_p2 P417_t011-P417_t012 2 CGGAAACCATTACTTTATCCTT TACCAAACTGCGCTACATCC 22 20 36.4 50.0 54.2 58.0 0.0 9.7 5.851702 44413 44584 226-230 1.000000 49.7 P417_t011-P417_t012_p3 P417_t011-P417_t012 3 CGGAAACCATTACTTTATCCT CTGTGACATTCTGCTCCCAA 21 20 38.1 50.0 53.3 57.8 0.0 0.0 5.882724 44413 44584 257-261 1.000000 49.5 P417_t011-P417_t012_p4 P417_t011-P417_t012 4 CGGAAACCATTACTTTATCCT AACCTGTGACATTCTGCTCC 21 20 38.1 50.0 53.3 57.8 0.0 0.0 5.884258 44413 44584 260-264 1.000000 49.5 P417_t011-P417_t012_p5 P417_t011-P417_t012 5 CGGAAACCATTACTTTATCCTT CTGTGACATTCTGCTCCCAA 22 20 36.4 50.0 54.2 57.8 0.0 0.0 6.022754 44413 44584 257-261 1.000000 49.5 rpl32-psbV_p1 rpl32-psbV 1 GGATGTAGCGCAGTTTGGTA TCAGAAAAATGGGGTGGTGG 20 20 50.0 50.0 58.0 58.0 11.5 0.0 0.026784 44835 45471 920-924 1.000000 88.0 rpl32-psbV_p2 rpl32-psbV 2 TAACAACACGGGATGTAGCG TCAGAAAAATGGGGTGGTGG 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.009194 44835 45471 930-934 0.750000 77.1 rpl32-psbV_p3 rpl32-psbV 3 TAACAACACGGGATGTAGCG ACCCGGAAGCTCTTAGTCTT 20 20 50.0 50.0 58.0 58.1 0.0 0.7 0.060972 44835 45471 1145-1149 0.750000 76.3 rpl32-psbV_p4 rpl32-psbV 4 TAACAACACGGGATGTAGCG ATCAAACCTCGTTTTGCCCT 20 20 50.0 45.0 58.0 58.0 0.0 3.1 0.005575 44835 45471 1371-1372 0.500000 60.5 rpl32-psbV_p5 rpl32-psbV 5 GGATGTAGCGCAGTTTGGTA ATCAAACCTCGTTTTGCCCT 20 20 50.0 45.0 58.0 58.0 11.5 3.1 0.023166 44835 45471 1361-1362 0.500000 60.3 clpC-I_p1 clpC-I 1 CCACCACCCCATTTTTCTGA GTTTCCATCCGTTATCCCCC 20 20 50.0 55.0 58.0 58.0 0.0 0.0 0.031186 46004 47347 2262-2295 1.000000 89.3 clpC-I_p2 clpC-I 2 CCACCACCCCATTTTTCTGA TTCTCTTCAGGCAGAGGTGA 20 20 50.0 50.0 58.0 58.0 0.0 1.0 0.023699 46004 47347 2363-2371 0.750000 76.6 clpC-I_p3 clpC-I 3 AGGGCAAAACGAGGTTTGAT TTCTCTTCAGGCAGAGGTGA 20 20 45.0 50.0 58.0 58.0 16.8 1.0 0.020080 46004 47347 1930-1930 0.500000 59.9 clpC-I_p4 clpC-I 4 AGGGCAAAACGAGGTTTGAT GTTTCCATCCGTTATCCCCC 20 20 45.0 55.0 58.0 58.0 16.8 0.0 0.027568 46004 47347 1854-1854 0.500000 59.8 clpC-I_p5 clpC-I 5 AGGGCAAAACGAGGTTTGAT GGCATATGGGGTTTTAGCGA 20 20 45.0 50.0 58.0 58.0 16.8 4.6 0.028964 46004 47347 1876-1876 0.500000 59.8 P417_r006-psaC_p1 P417_r006-psaC 1 GAAGGTAGCTCAATGCCTGG TGCAACCAATACACGTGTCA 20 20 55.0 45.0 58.3 58.0 0.0 27.2 0.371905 52527 52687 221-226 1.000000 87.9 P417_r006-psaC_p2 P417_r006-psaC 2 GGAAGGTAGCTCAATGCCTG TGCAACCAATACACGTGTCA 20 20 55.0 45.0 58.3 58.0 0.0 27.2 0.371905 52527 52687 222-227 1.000000 87.9 P417_r006-psaC_p3 P417_r006-psaC 3 CGAACTCAGATGTGAAACGC TGCAACCAATACACGTGTCA 20 20 50.0 45.0 57.5 58.0 0.0 27.2 0.539070 52527 52687 277-282 1.000000 86.0 P417_r006-psaC_p4 P417_r006-psaC 4 GAAGGTAGCTCAATGCCTGG GTGCAACCAATACACGTGTC 20 20 55.0 50.0 58.3 57.7 0.0 27.2 0.636729 52527 52687 222-227 1.000000 85.8 P417_r006-psaC_p5 P417_r006-psaC 5 GGAAGGTAGCTCAATGCCTG GTGCAACCAATACACGTGTC 20 20 55.0 50.0 58.3 57.7 0.0 27.2 0.636729 52527 52687 223-228 1.000000 85.7 thiG-rpl27_p1 thiG-rpl27 1 GGCCTTTCTGCTGATGCTAT ATCGTGTTATTCGATCGCGT 20 20 50.0 45.0 58.0 57.9 0.0 11.1 0.136894 53953 54283 1451-1657 0.750000 80.9 thiG-rpl27_p2 thiG-rpl27 2 GCGGACCCTAAAGGCATTAA ATCGTGTTATTCGATCGCGT 20 20 50.0 45.0 58.0 57.9 0.0 11.1 0.162350 53953 54283 1274-1480 0.500000 68.0 thiG-rpl27_p3 thiG-rpl27 3 GGCCTTTCTGCTGATGCTAT GCGACAATGTTGGTATTGGC 20 20 50.0 50.0 58.0 58.1 0.0 2.4 0.113480 53953 54283 1199-1199 0.250000 49.1 thiG-rpl27_p4 thiG-rpl27 4 GCGGACCCTAAAGGCATTAA GCGACAATGTTGGTATTGGC 20 20 50.0 50.0 58.0 58.1 0.0 2.4 0.138937 53953 54283 1022-1022 0.250000 48.9 thiG-rpl27_p5 thiG-rpl27 5 AGCATCTGCACCAATTTCCA GCGACAATGTTGGTATTGGC 20 20 45.0 50.0 58.1 58.1 4.8 2.4 0.164447 53953 54283 1161-1161 0.250000 48.7 ycf54-secA_p1 ycf54-secA 1 CTCAGGCGAAGGAAGAATCC GATGCAGGAAGAGTGGCTAC 20 20 55.0 55.0 58.1 58.1 0.0 0.0 0.106510 55461 57755 2731-2783 0.500000 65.3 ycf54-secA_p2 ycf54-secA 2 CTCAGGCGAAGGAAGAATCC GTACACCTTTGCCGCTAAGA 20 20 55.0 50.0 58.1 57.9 0.0 15.1 0.142205 55461 57755 2812-2812 0.250000 48.9 ycf54-secA_p3 ycf54-secA 3 CTCAGGCGAAGGAAGAATCC TTGCCGCTAAGAGCTTGAAA 20 20 55.0 45.0 58.1 58.1 0.0 0.0 0.162379 55461 57755 2804-2804 0.250000 48.7 ycf54-secA_p4 ycf54-secA 4 CTCAGGCGAAGGAAGAATCC TTTGCCGCTAAGAGCTTGAA 20 20 55.0 45.0 58.1 58.1 0.0 0.0 0.162379 55461 57755 2805-2805 0.250000 48.7 ycf54-secA_p5 ycf54-secA 5 CTCAGGCGAAGGAAGAATCC CGAGCCCTCCAAGAATTTGA 20 20 55.0 50.0 58.1 57.9 0.0 0.0 0.167115 55461 57755 2710-2710 0.250000 48.7 rbcS-psbA_p1 rbcS-psbA 1 TCCTCCTGGAGAACGTTACG GTTGCATTAAACGCTCCTGC 20 20 55.0 50.0 58.8 58.4 25.2 0.0 1.210952 92991 93369 423-760 1.000000 82.3 rbcS-psbA_p2 rbcS-psbA 2 TCCTCCTGGAGAACGTTACG TTGCATTAAACGCTCCTGCT 20 20 55.0 45.0 58.8 58.5 25.2 0.0 1.295067 92991 93369 422-759 1.000000 81.6 rbcS-psbA_p3 rbcS-psbA 3 CCTCCTGGAGAACGTTACGT GTTGCATTAAACGCTCCTGC 20 20 55.0 50.0 59.1 58.4 25.2 0.0 1.495698 92991 93369 422-759 1.000000 80.0 rbcS-psbA_p4 rbcS-psbA 4 CCTCCTGGAGAACGTTACGT TTGCATTAAACGCTCCTGCT 20 20 55.0 45.0 59.1 58.5 25.2 0.0 1.579812 92991 93369 421-758 1.000000 79.4 rbcS-psbA_p5 rbcS-psbA 5 TCCTCCTGGAGAACGTTACG CGCTCCTGCTGTTAATGCTT 20 20 55.0 50.0 58.8 58.9 25.2 5.3 1.738772 92991 93369 412-749 1.000000 78.1 chlN_p1 chlN 1 AGCGCTCCCATAAGCTAGTA TCGCGAAAAAGCTAGGACTC 20 20 50.0 50.0 58.0 58.0 2.6 6.2 0.011032 94673 95998 2013-2019 0.750000 75.6 chlN_p2 chlN 2 CACCGAACCAACCGATGTAT TCGCGAAAAAGCTAGGACTC 20 20 50.0 50.0 58.0 58.0 0.0 6.2 0.026372 94673 95998 2067-2073 0.750000 75.4 chlN_p3 chlN 3 GCGCTCCCATAAGCTAGTAC TCGCGAAAAAGCTAGGACTC 20 20 55.0 50.0 57.9 58.0 0.0 6.2 0.075244 94673 95998 2012-2018 0.750000 75.1 chlN_p4 chlN 4 CATTCACGTCCCATGTAGCA TCGCGAAAAAGCTAGGACTC 20 20 50.0 50.0 58.0 58.0 0.0 6.2 0.030595 94673 95998 2356-2362 0.750000 74.7 chlN_p5 chlN 5 CCCATTCACGTCCCATGTAG TCGCGAAAAAGCTAGGACTC 20 20 55.0 50.0 58.0 58.0 0.0 6.2 0.054271 94673 95998 2358-2364 0.750000 74.5 rps16-P417_t022_p1 rps16-P417_t022 1 TCCAAAAGCAATTCCACCGA TATCGCCAGGTTGACATTGG 20 20 45.0 50.0 58.0 58.0 0.0 0.0 0.048664 99715 100553 1950-1953 1.000000 87.8 rps16-P417_t022_p2 rps16-P417_t022 2 CTACCCCATACCACCATTGC TATCGCCAGGTTGACATTGG 20 20 55.0 50.0 58.0 58.0 0.0 0.0 0.055701 99715 100553 1875-1878 1.000000 87.8 rps16-P417_t022_p3 rps16-P417_t022 3 GAGCACCTTGTGATAAGCGA TATCGCCAGGTTGACATTGG 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.047103 99715 100553 1637-1640 0.500000 64.3 rps16-P417_t022_p4 rps16-P417_t022 4 GAGCACCTTGTGATAAGCGA AGTTGAATGCTATCGCCAGG 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.051103 99715 100553 1647-1650 0.500000 64.2 rps16-P417_t022_p5 rps16-P417_t022 5 TCCAAAAGCAATTCCACCGA AGTTGAATGCTATCGCCAGG 20 20 45.0 50.0 58.0 58.0 0.0 0.0 0.052665 99715 100553 1960-1963 0.500000 63.9 psaI-psbJ_p1 psaI-psbJ 1 GAAGGGGTTTTACCTGGTGG GCTTGTAGCCTTTGTTGCAG 20 20 55.0 50.0 58.1 57.9 10.2 0.0 0.136854 103911 103965 754-755 0.750000 77.2 psaI-psbJ_p2 psaI-psbJ 2 GAAGGGGTTTTACCTGGTGG TGTAGCCTTTGTTGCAGGTT 20 20 55.0 45.0 58.1 57.9 10.2 0.0 0.146658 103911 103965 751-752 0.750000 77.1 psaI-psbJ_p3 psaI-psbJ 3 GAAGGGGTTTTACCTGGTGG TTGTAGCCTTTGTTGCAGGT 20 20 55.0 45.0 58.1 57.9 10.2 0.0 0.146658 103911 103965 752-753 0.750000 77.1 psaI-psbJ_p4 psaI-psbJ 4 GAAGGGGTTTTACCTGGTGG ACGTTTCGTTGGTTAGCAGT 20 20 55.0 45.0 58.1 58.1 10.2 0.0 0.136728 103911 103965 1088-1090 0.750000 75.2 psaI-psbJ_p5 psaI-psbJ 5 GAAGGGGTTTTACCTGGTGG GAACGCCCATTCTCAGACAT 20 20 55.0 50.0 58.1 58.0 10.2 0.0 0.110598 103911 103965 1366-1368 0.750000 74.3 ycf49-psaL_p1 ycf49-psaL 1 ACTTTGTGCCCCAAATCCAT GCAGAACGTAATGGGCCATA 20 20 45.0 50.0 58.0 58.0 0.0 21.5 0.066768 105732 106263 1231-1234 0.500000 62.3 ycf49-psaL_p2 ycf49-psaL 2 ACTTTGTGCCCCAAATCCAT AAGGCTATACCAACTGCAGC 20 20 45.0 50.0 58.0 58.0 0.0 15.3 0.072684 105732 106263 1519-1522 0.500000 62.3 ycf49-psaL_p3 ycf49-psaL 3 ACTTTGTGCCCCAAATCCAT TGGTGTTAGTCCTGGTCGAT 20 20 45.0 50.0 58.0 58.1 0.0 0.0 0.095540 105732 106263 1148-1151 0.500000 62.2 ycf49-psaL_p4 ycf49-psaL 4 GTTTTCGGACCGGACTATCC GCAGAACGTAATGGGCCATA 20 20 55.0 50.0 58.1 58.0 15.2 21.5 0.106300 105732 106263 1463-1463 0.250000 49.1 ycf49-psaL_p5 ycf49-psaL 5 GTTTTCGGACCGGACTATCC AAGGCTATACCAACTGCAGC 20 20 55.0 50.0 58.1 58.0 15.2 15.3 0.112217 105732 106263 1751-1751 0.250000 49.1