feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 1130 1164 1 35 LSC 0.000000 0 0 4 36 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 1707 1756 1 50 LSC 0.000000 0 0 89 4 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_003 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 1757 2190 0 434 LSC 0.052439 42 33 139 39 yes 1.000000 4 1.000000 0.052999 0.942396 81.900000 trnF-GAA tRNA trnF-GAA trnF-GAA 2191 2263 1 73 LSC 0.006849 1 0 1 34 no 0.250000 2 0.500000 0.006849 1.000000 28.300000 IGS_004 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 2264 3016 0 753 LSC 0.050257 68 44 33 115 yes 1.000000 4 1.000000 0.048809 0.942895 84.200000 ndhJ gene ndhJ ndhJ 3017 3493 -1 477 LSC 0.010482 10 1 23 36 no 1.000000 4 1.000000 0.010494 1.000000 50.500000 IGS_005 igs ndhJ|ndhK ndhJ-ndhK 3494 3647 0 154 LSC 0.033333 6 37 11 32 no 1.000000 4 1.000000 0.018919 0.759740 57.200000 ndhK gene ndhK ndhK 3648 4325 -1 678 LSC 0.015487 19 0 57 50 no 1.000000 4 1.000000 0.015487 1.000000 58.000000 IGS_006 igs ndhK|ndhC ndhK-ndhC 4326 4366 0 41 LSC 0.000000 0 0 24 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 ndhC gene ndhC ndhC 4367 4729 -1 363 LSC 0.013315 9 0 65 20 no 1.000000 4 1.000000 0.013315 1.000000 49.400000 IGS_007 igs ndhC|trnV-UAC ndhC-trnV-UAC 4730 6043 0 1314 LSC 0.109997 181 471 98 40 yes 1.000000 4 1.000000 0.093155 0.705479 78.100000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 6044 6080 -1 37 LSC 0.000000 0 0 15 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 6696 6734 -1 39 LSC 0.000000 0 0 26 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_010 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 6735 6897 0 163 LSC 0.016360 5 0 65 91 no 1.000000 4 1.000000 0.016360 1.000000 53.600000 trnM-CAU tRNA trnM-CAU trnM-CAU 6898 6969 1 72 LSC 0.000000 0 1 6 19 no 0.250000 2 0.500000 0.000000 1.000000 25.500000 IGS_011 igs trnM-CAU|atpE trnM-CAU-atpE 6970 7246 0 277 LSC 0.059179 28 1 78 192 no 1.000000 4 1.000000 0.059179 0.996390 78.700000 atpE gene atpE atpE 7247 7648 -1 402 LSC 0.009950 8 0 0 8 no 1.000000 4 1.000000 0.009950 1.000000 46.600000 atpB gene atpB atpB 7645 9141 -1 1497 LSC 0.011801 34 0 41 4 no 1.000000 4 1.000000 0.011801 1.000000 52.200000 IGS_013 igs atpB|rbcL atpB-rbcL 9142 9922 0 781 LSC 0.030848 44 8 14 35 no 1.000000 4 1.000000 0.030533 0.993598 66.800000 rbcL gene rbcL rbcL 9923 11350 1 1428 LSC 0.017157 47 0 34 41 no 1.000000 4 1.000000 0.017157 1.000000 58.100000 IGS_014 igs rbcL|accD rbcL-accD 11351 12417 0 1067 LSC 0.076190 134 129 19 20 yes 1.000000 4 1.000000 0.066451 0.911903 83.600000 accD gene accD accD 12418 13950 1 1533 LSC 0.034632 92 147 21 17 no 1.000000 4 1.000000 0.034632 0.904110 70.800000 IGS_015 igs accD|psaI accD-psaI 13951 14732 0 782 LSC 0.150483 125 346 54 38 yes 1.000000 4 1.000000 0.109568 0.576726 76.300000 psaI gene psaI psaI 14733 14846 1 114 LSC 0.017544 4 0 50 7 no 1.000000 4 1.000000 0.017544 1.000000 50.300000 IGS_016 igs psaI|ycf4 psaI-ycf4 14847 15037 0 191 LSC 0.027193 10 3 27 75 no 1.000000 4 1.000000 0.027370 0.989529 59.900000 ycf4 gene ycf4 ycf4 15038 15592 1 555 LSC 0.013514 14 0 21 3 no 1.000000 4 1.000000 0.013514 1.000000 52.300000 IGS_017 igs ycf4|cemA ycf4-cemA 15593 16073 0 481 LSC 0.053303 38 57 1 45 no 1.000000 4 1.000000 0.042732 0.883576 76.100000 cemA gene cemA cemA 16074 16763 1 690 LSC 0.016908 22 0 93 11 no 1.000000 4 1.000000 0.016908 1.000000 56.200000 IGS_018 igs cemA|petA cemA-petA 16764 16983 0 220 LSC 0.017424 7 7 14 12 no 1.000000 4 1.000000 0.016183 1.000000 53.900000 petA gene petA petA 16984 17946 1 963 LSC 0.014711 28 0 83 2 no 1.000000 4 1.000000 0.014711 1.000000 54.200000 IGS_019 igs petA|psbJ petA-psbJ 17947 19305 0 1359 LSC 0.080613 178 154 225 146 yes 1.000000 4 1.000000 0.065964 0.938926 93.800000 psbJ gene psbJ psbJ 19306 19428 -1 123 LSC 0.000000 0 0 4 23 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_020 igs psbJ|psbL psbJ-psbL 19429 19553 0 125 LSC 0.020000 5 0 127 6 no 0.500000 3 0.666667 0.020000 1.000000 42.600000 psbL gene psbL psbL 19554 19670 -1 117 LSC 0.008547 2 0 4 58 no 0.500000 3 0.666667 0.008547 1.000000 34.400000 IGS_021 igs psbL|psbF psbL-psbF 19671 19692 0 22 LSC 0.000000 0 0 71 36 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 psbF gene psbF psbF 19693 19812 -1 120 LSC 0.004167 1 0 93 47 no 0.250000 2 0.500000 0.004167 1.000000 29.900000 IGS_022 igs psbF|psbE psbF-psbE 19813 19821 0 9 LSC 0.000000 0 0 83 38 no 0.000000 1 0.000000 NA 1.000000 21.600000 psbE gene psbE psbE 19822 20073 -1 252 LSC 0.003968 2 0 92 27 no 0.500000 3 0.666667 0.003968 1.000000 32.900000 IGS_023 igs psbE|petL psbE-petL 20074 21436 0 1363 LSC 0.038651 89 107 175 23 no 1.000000 4 1.000000 0.034410 0.924431 74.700000 petL gene petL petL 21437 21532 1 96 LSC 0.020833 4 0 20 33 no 1.000000 4 1.000000 0.020833 1.000000 53.600000 IGS_024 igs petL|petG petL-petG 21533 21717 0 185 LSC 0.051351 18 3 19 109 no 1.000000 4 1.000000 0.051811 0.994595 75.400000 petG gene petG petG 21718 21831 1 114 LSC 0.004386 1 0 4 14 no 0.250000 2 0.500000 0.004386 1.000000 26.800000 IGS_025 igs petG|trnW-CCA petG-trnW-CCA 21832 21959 0 128 LSC 0.042969 11 0 4 89 no 1.000000 4 1.000000 0.042969 1.000000 67.900000 trnW-CCA tRNA trnW-CCA trnW-CCA 21960 22033 -1 74 LSC 0.000000 0 0 3 15 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_026 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 22034 22223 0 190 LSC 0.026455 9 6 77 86 no 1.000000 4 1.000000 0.025072 0.984211 64.400000 trnP-UGG tRNA trnP-UGG trnP-UGG 22224 22297 -1 74 LSC 0.000000 0 0 25 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_027 igs trnP-UGG|psaJ trnP-UGG-psaJ 22298 22732 0 435 LSC 0.065098 48 38 99 48 yes 1.000000 4 1.000000 0.057164 0.944828 83.200000 psaJ gene psaJ psaJ 22733 22867 1 135 LSC 0.019753 5 0 33 80 no 1.000000 4 1.000000 0.019753 1.000000 53.500000 IGS_028 igs psaJ|rpl33 psaJ-rpl33 22868 23437 0 570 LSC 0.038669 39 18 3 8 no 1.000000 4 1.000000 0.038242 0.971930 72.200000 rpl33 gene rpl33 rpl33 23438 23638 1 201 LSC 0.020730 8 0 53 7 no 1.000000 4 1.000000 0.020730 1.000000 52.300000 IGS_029 igs rpl33|rps18 rpl33-rps18 23639 24171 0 533 LSC 0.152557 93 243 51 62 yes 1.000000 4 1.000000 0.126870 0.660413 76.900000 rps18 gene rps18 rps18 24172 24480 1 309 LSC 0.025890 15 0 19 20 no 1.000000 4 1.000000 0.025890 1.000000 56.800000 IGS_030 igs rps18|rpl20 rps18-rpl20 24481 24729 0 249 LSC 0.028782 14 0 0 84 no 1.000000 4 1.000000 0.028782 1.000000 57.500000 rpl20 gene rpl20 rpl20 24730 25089 -1 360 LSC 0.034259 23 0 3 173 no 1.000000 4 1.000000 0.034259 1.000000 62.400000 IGS_031 igs rpl20|rps12 rpl20-rps12 25090 25895 0 806 LSC 0.020025 29 12 46 41 no 1.000000 4 1.000000 0.017171 0.987593 61.800000 rps12_part1 gene rps12 rps12 25896 26009 -1 114 LSC 0.021930 5 0 62 26 no 1.000000 4 1.000000 0.021930 1.000000 54.800000 IGS_032 igs rps12|clpP rps12-clpP 26010 26217 0 208 LSC 0.033654 13 0 5 0 no 1.000000 4 1.000000 0.033654 1.000000 60.500000 clpP gene clpP clpP 26218 28257 -1 2040 LSC 0.056305 204 130 7 14 yes 1.000000 4 1.000000 0.052596 0.951471 82.800000 IGS_033 igs clpP|psbB clpP-psbB 28258 28753 0 496 LSC 0.028174 26 13 34 101 no 1.000000 4 1.000000 0.027710 0.987903 66.100000 psbB gene psbB psbB 28754 30280 1 1527 LSC 0.009277 27 0 20 5 no 1.000000 4 1.000000 0.009277 1.000000 50.500000 IGS_034 igs psbB|psbT psbB-psbT 30281 30468 0 188 LSC 0.031915 11 3 48 97 no 1.000000 4 1.000000 0.032131 1.000000 64.600000 psbT gene psbT psbT 30469 30576 1 108 LSC 0.013889 3 0 38 66 no 0.500000 3 0.666667 0.013889 1.000000 40.700000 IGS_035 igs psbT|psbN psbT-psbN 30577 30636 0 60 LSC 0.000000 0 0 7 6 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 psbN gene psbN psbN 30637 30768 -1 132 LSC 0.007576 2 0 67 99 no 0.250000 2 0.500000 0.007576 1.000000 33.800000 IGS_036 igs psbN|psbH psbN-psbH 30769 30872 0 104 LSC 0.006410 1 0 65 43 no 0.000000 2 0.000000 0.006410 1.000000 26.100000 psbH gene psbH psbH 30873 31094 1 222 LSC 0.011261 5 0 4 19 no 0.500000 3 0.666667 0.011261 1.000000 36.300000 IGS_037 igs psbH|petB psbH-petB 31095 31226 0 132 LSC 0.022727 5 0 99 48 no 1.000000 4 1.000000 0.022727 1.000000 56.100000 petB gene petB petB 31227 32680 1 1454 LSC 0.017174 47 52 76 1 no 1.000000 4 1.000000 0.017202 0.993810 59.600000 IGS_038 igs petB|petD petB-petD 32681 32890 0 210 LSC 0.056349 22 4 60 29 no 1.000000 4 1.000000 0.056827 1.000000 76.900000 petD gene petD petD 32891 34097 1 1207 LSC 0.020400 45 10 11 6 no 1.000000 4 1.000000 0.019755 0.991715 58.800000 IGS_039 igs petD|rpoA petD-rpoA 34098 34302 0 205 LSC 0.035772 14 1 12 12 no 1.000000 4 1.000000 0.035908 0.995122 63.500000 rpoA gene rpoA rpoA 34303 35298 -1 996 LSC 0.016566 31 0 3 16 no 1.000000 4 1.000000 0.016566 1.000000 55.300000 IGS_040 igs rpoA|rps11 rpoA-rps11 35299 35375 0 77 LSC 0.036797 5 0 11 3 no 1.000000 4 1.000000 0.036797 1.000000 62.400000 rps11 gene rps11 rps11 35376 35792 -1 417 LSC 0.021583 18 0 7 14 no 1.000000 4 1.000000 0.021583 1.000000 55.600000 IGS_041 igs rps11|rpl36 rps11-rpl36 35793 35945 0 153 LSC 0.055556 16 12 15 30 yes 1.000000 4 1.000000 0.051167 0.986928 79.000000 rpl36 gene rpl36 rpl36 35946 36059 -1 114 LSC 0.013158 3 0 6 22 no 0.500000 3 0.666667 0.013158 1.000000 37.800000 IGS_042 igs rpl36|rps8 rpl36-rps8 36060 36554 0 495 LSC 0.068750 56 151 17 18 yes 1.000000 4 1.000000 0.065996 0.935354 80.200000 rps8 gene rps8 rps8 36555 36959 -1 405 LSC 0.028395 21 0 12 33 no 1.000000 4 1.000000 0.028395 1.000000 59.800000 IGS_043 igs rps8|rpl14 rps8-rpl14 36960 37661 0 702 LSC 0.147842 83 451 13 66 yes 1.000000 4 1.000000 0.118318 0.460114 73.000000 rpl14 gene rpl14 rpl14 37662 38030 -1 369 LSC 0.009033 6 0 2 30 no 1.000000 4 1.000000 0.009033 1.000000 45.200000 IGS_044 igs rpl14|rpl16 rpl14-rpl16 38031 38169 0 139 LSC 0.025180 7 5 17 14 no 1.000000 4 1.000000 0.025760 0.985612 60.100000 rpl16 gene rpl16 rpl16 38170 39410 -1 1241 LSC 0.026373 63 38 6 5 no 1.000000 4 1.000000 0.026383 0.987107 65.600000 IGS_045 igs rpl16|rps3 rpl16-rps3 39411 39837 0 427 LSC 0.040079 31 19 14 62 no 1.000000 4 1.000000 0.040691 0.976581 72.900000 rps3 gene rps3 rps3 39838 40494 -1 657 LSC 0.016235 21 0 14 6 no 1.000000 4 1.000000 0.016235 1.000000 55.500000 IGS_046 igs rps3|rps19 rps3-rps19 40495 41359 0 865 LSC 0.180187 200 281 60 27 yes 1.000000 4 1.000000 0.168717 0.691329 76.900000 rps19 gene rps19 rps19 41360 41638 -1 279 LSC 0.011350 6 0 4 25 no 1.000000 4 1.000000 0.011350 1.000000 45.600000 IGS_047 igs rps19|rpl2 rps19-rpl2 41639 41700 0 62 IRb 0.016129 2 1 59 118 no 1.000000 4 1.000000 0.016217 1.000000 55.100000 rpl2 gene rpl2 rpl2 41701 43190 -1 1490 IRb 0.004922 14 0 15 111 no 1.000000 4 1.000000 0.004922 1.000000 48.300000 IGS_048 igs rpl2|rpl23 rpl2-rpl23 43191 43208 0 18 IRb 0.000000 0 0 35 93 no 0.000000 1 0.000000 NA 1.000000 21.400000 rpl23 gene rpl23 rpl23 43209 43490 -1 282 IRb 0.010638 6 0 53 42 no 1.000000 4 1.000000 0.010638 1.000000 48.100000 IGS_049 igs rpl23|trnI-CAU rpl23-trnI-CAU 43491 43655 0 165 IRb 0.017606 5 23 32 131 no 0.250000 2 0.500000 0.017606 0.860606 38.800000 trnI-CAU tRNA trnI-CAU trnI-CAU 43656 43729 -1 74 IRb 0.000000 0 0 11 57 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_050 igs trnI-CAU|ycf2 trnI-CAU-ycf2 43730 43817 0 88 IRb 0.017045 3 0 85 2 no 0.250000 2 0.500000 0.017045 1.000000 35.500000 ycf2 gene ycf2 ycf2 43818 50633 1 6816 IRb 0.009140 120 33 1 7 no 1.000000 4 1.000000 0.009140 0.995158 44.300000 IGS_051 igs ycf2|trnL-CAA ycf2-trnL-CAA 50634 51580 0 947 IRb 0.008139 15 14 84 149 no 1.000000 4 1.000000 0.008183 0.994720 57.300000 trnL-CAA tRNA trnL-CAA trnL-CAA 51581 51661 -1 81 IRb 0.000000 0 0 104 68 no 0.000000 1 0.000000 0.000000 1.000000 23.800000 IGS_052 igs trnL-CAA|ndhB trnL-CAA-ndhB 51662 52237 0 576 IRb 0.003503 4 5 185 21 no 0.250000 2 0.500000 0.003503 0.991319 34.000000 ndhB gene ndhB ndhB 52238 54455 -1 2218 IRb 0.002780 12 0 60 29 no 1.000000 4 1.000000 0.002780 1.000000 46.400000 IGS_053 igs ndhB|rps7 ndhB-rps7 54456 54774 0 319 IRb 0.012539 8 0 300 300 no 1.000000 4 1.000000 0.012539 1.000000 61.700000 rps7 gene rps7 rps7 54775 55242 -1 468 IRb 0.000000 0 0 34 24 no 0.000000 1 0.000000 0.000000 1.000000 24.100000 IGS_054 igs rps7|rps12 rps7-rps12 55243 55295 0 53 IRb 0.009434 1 0 300 189 no 0.250000 2 0.500000 0.009434 1.000000 44.200000 rps12_part2 gene rps12 rps12 55296 56089 -1 794 IRb 0.003359 5 0 28 1 no 1.000000 4 1.000000 0.003359 1.000000 46.100000 IGS_055 igs rps12|trnV-GAC rps12-trnV-GAC 56090 57979 0 1890 IRb 0.005648 19 33 11 132 no 1.000000 4 1.000000 0.005205 0.982540 49.100000 trnV-GAC tRNA trnV-GAC trnV-GAC 57980 58051 1 72 IRb 0.000000 0 0 128 60 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 IGS_056 igs trnV-GAC|trnI-GAU trnV-GAC-trnI-GAU 58052 60072 0 2021 IRb 0.000990 4 1 200 187 no 0.250000 2 0.500000 0.000990 0.999505 43.400000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 60073 60109 1 37 IRb 0.000000 0 0 300 150 no 0.000000 1 0.000000 0.000000 1.000000 30.000000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 61063 61097 1 35 IRb 0.000000 0 0 155 246 no 0.000000 1 0.000000 0.000000 1.000000 30.400000 IGS_059 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 61098 61161 0 64 IRb 0.000000 0 0 190 182 no 0.000000 1 0.000000 0.000000 1.000000 32.400000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 61162 61199 1 38 IRb 0.000000 0 0 254 144 no 0.000000 1 0.000000 0.000000 1.000000 29.500000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 62002 62036 1 35 IRb 0.000000 0 0 300 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_062 igs trnA-UGC|rrn23 trnA-UGC-rrn23 62037 62196 0 160 IRb 0.003125 1 0 300 93 no 0.250000 2 0.500000 0.003125 1.000000 32.600000 rrn23 rRNA rrn23 rrn23 62197 65003 1 2807 IRb 0.000713 4 0 154 25 no 0.500000 3 0.666667 0.000713 1.000000 34.000000 IGS_063 igs rrn23|trnR-ACG rrn23-trnR-ACG 65004 65803 0 800 IRb 0.009375 14 14 110 98 no 1.000000 4 1.000000 0.009491 0.988750 59.300000 trnR-ACG tRNA trnR-ACG trnR-ACG 65804 65877 1 74 IRb 0.000000 0 0 61 24 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_064 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 65878 66500 0 623 IRb 0.015054 18 9 135 85 no 1.000000 4 1.000000 0.015133 0.993579 62.000000 trnN-GUU tRNA trnN-GUU trnN-GUU 66501 66572 -1 72 IRb 0.000000 0 0 19 13 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_065 igs trnN-GUU|ndhF trnN-GUU-ndhF 66573 67691 0 1119 IRb 0.043640 81 37 91 0 no 1.000000 4 1.000000 0.036861 0.988382 76.100000 ndhF gene ndhF ndhF 67692 69938 -1 2247 SSC 0.027405 114 15 0 11 no 1.000000 4 1.000000 0.027087 0.993769 61.500000 IGS_066 igs ndhF|rpl32 ndhF-rpl32 69939 70930 0 992 SSC 0.068689 105 198 10 20 yes 1.000000 4 1.000000 0.056243 0.821573 80.300000 rpl32 gene rpl32 rpl32 70931 71098 1 168 SSC 0.023810 8 0 2 10 no 1.000000 4 1.000000 0.023810 1.000000 54.300000 IGS_067 igs rpl32|trnL-UAG rpl32-trnL-UAG 71099 71556 0 458 SSC 0.074405 61 27 11 48 yes 1.000000 4 1.000000 0.071826 0.962882 81.500000 trnL-UAG tRNA trnL-UAG trnL-UAG 71557 71636 1 80 SSC 0.006250 1 0 1 82 no 0.250000 2 0.500000 0.006250 1.000000 27.900000 IGS_068 igs trnL-UAG|ccsA trnL-UAG-ccsA 71637 71722 0 86 SSC 0.009690 1 1 31 20 no 1.000000 4 1.000000 0.009736 1.000000 46.200000 ccsA gene ccsA ccsA 71723 72718 1 996 SSC 0.021846 40 50 3 46 no 1.000000 4 1.000000 0.021846 0.949799 63.300000 IGS_069 igs ccsA|ndhD ccsA-ndhD 72719 73527 0 809 SSC 0.136294 141 316 51 17 yes 1.000000 4 1.000000 0.116624 0.730532 76.700000 ndhD gene ndhD ndhD 73528 75024 -1 1497 SSC 0.018593 52 0 42 54 no 1.000000 4 1.000000 0.018593 1.000000 59.600000 IGS_070 igs ndhD|psaC ndhD-psaC 75025 75164 0 140 SSC 0.052910 13 15 38 111 no 1.000000 4 1.000000 0.053079 0.900000 77.100000 psaC gene psaC psaC 75165 75410 -1 246 SSC 0.010163 5 0 19 24 no 1.000000 4 1.000000 0.010163 1.000000 46.000000 IGS_071 igs psaC|ndhE psaC-ndhE 75411 75670 0 260 SSC 0.048280 23 8 5 44 no 1.000000 4 1.000000 0.048280 0.969231 73.400000 ndhE gene ndhE ndhE 75671 75976 -1 306 SSC 0.008170 5 0 7 3 no 0.500000 3 0.666667 0.008170 1.000000 34.200000 IGS_072 igs ndhE|ndhG ndhE-ndhG 75977 76235 0 259 SSC 0.043750 21 19 56 15 no 1.000000 4 1.000000 0.043750 0.926641 72.100000 ndhG gene ndhG ndhG 76236 76766 -1 531 SSC 0.007533 8 0 8 17 no 1.000000 4 1.000000 0.007533 1.000000 48.200000 IGS_073 igs ndhG|ndhI ndhG-ndhI 76767 77014 0 248 SSC 0.056485 24 65 119 33 no 1.000000 4 1.000000 0.053111 0.935484 77.200000 ndhI gene ndhI ndhI 77015 77500 -1 486 SSC 0.012689 12 0 2 5 no 1.000000 4 1.000000 0.012689 1.000000 50.300000 IGS_074 igs ndhI|ndhA ndhI-ndhA 77501 77579 0 79 SSC 0.046414 7 0 72 3 no 1.000000 4 1.000000 0.046414 1.000000 69.700000 ndhA gene ndhA ndhA 77580 80236 -1 2657 SSC 0.042059 189 187 6 42 yes 1.000000 4 1.000000 0.038534 0.952954 74.000000 IGS_075 igs ndhA|ndhH ndhA-ndhH 80237 80237 0 1 SSC 0.000000 0 0 78 41 no 0.000000 1 0.000000 NA 1.000000 21.800000 ndhH gene ndhH ndhH 80238 81419 -1 1182 SSC 0.011139 24 0 79 24 no 1.000000 4 1.000000 0.011139 1.000000 53.100000 IGS_076 igs ndhH|rps15 ndhH-rps15 81420 81522 0 103 SSC 0.025890 5 0 12 26 no 1.000000 4 1.000000 0.025890 1.000000 56.100000 rps15 gene rps15 rps15 81523 81795 -1 273 SSC 0.014652 8 0 8 6 no 1.000000 4 1.000000 0.014652 1.000000 48.200000 IGS_077 igs rps15|ycf1 rps15-ycf1 81796 82194 0 399 SSC 0.077549 54 16 21 18 yes 1.000000 4 1.000000 0.075319 0.964912 79.700000 ycf1 gene ycf1 ycf1 82195 87678 -1 5484 SSC 0.055914 539 369 1 8 no 1.000000 4 1.000000 0.053651 0.942013 76.600000 IGS_078 igs ycf1|trnN-GUU ycf1-trnN-GUU 87679 88006 0 328 IRa 0.015752 10 1 8 91 no 1.000000 4 1.000000 0.015772 1.000000 49.900000 trnN-GUU tRNA trnN-GUU trnN-GUU 88007 88078 1 72 IRa 0.000000 0 0 13 19 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_079 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 88079 88701 0 623 IRa 0.015054 18 9 85 135 no 1.000000 4 1.000000 0.015133 0.993579 62.000000 trnR-ACG tRNA trnR-ACG trnR-ACG 88702 88775 -1 74 IRa 0.000000 0 0 24 61 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_080 igs trnR-ACG|rrn23 trnR-ACG-rrn23 88776 89575 0 800 IRa 0.009375 14 14 98 110 no 1.000000 4 1.000000 0.009491 0.988750 59.300000 rrn23 rRNA rrn23 rrn23 89576 92382 -1 2807 IRa 0.000713 4 0 25 154 no 0.500000 3 0.666667 0.000713 1.000000 34.000000 IGS_081 igs rrn23|trnA-UGC rrn23-trnA-UGC 92383 92542 0 160 IRa 0.003125 1 0 93 300 no 0.250000 2 0.500000 0.003125 1.000000 32.600000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 92543 92577 -1 35 IRa 0.000000 0 0 5 300 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 93380 93417 -1 38 IRa 0.000000 0 0 144 254 no 0.000000 1 0.000000 0.000000 1.000000 29.500000 IGS_084 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 93418 93481 0 64 IRa 0.000000 0 0 182 190 no 0.000000 1 0.000000 0.000000 1.000000 32.400000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 93482 93516 -1 35 IRa 0.000000 0 0 246 155 no 0.000000 1 0.000000 0.000000 1.000000 30.400000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 94470 94506 -1 37 IRa 0.000000 0 0 150 300 no 0.000000 1 0.000000 0.000000 1.000000 30.000000 IGS_087 igs trnI-GAU|trnV-GAC trnI-GAU-trnV-GAC 94507 96527 0 2021 IRa 0.000990 4 1 187 200 no 0.250000 2 0.500000 0.000990 0.999505 43.400000 trnV-GAC tRNA trnV-GAC trnV-GAC 96528 96599 -1 72 IRa 0.000000 0 0 60 128 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 IGS_088 igs trnV-GAC|rps12 trnV-GAC-rps12 96600 98489 0 1890 IRa 0.005648 19 33 132 11 no 1.000000 4 1.000000 0.005205 0.982540 49.100000 rps12_part2 gene rps12 rps12 98490 99283 1 794 IRa 0.003359 5 0 1 28 no 1.000000 4 1.000000 0.003359 1.000000 46.100000 IGS_089 igs rps12|rps7 rps12-rps7 99284 99336 0 53 IRa 0.009434 1 0 189 300 no 0.250000 2 0.500000 0.009434 1.000000 44.200000 rps7 gene rps7 rps7 99337 99804 1 468 IRa 0.000000 0 0 24 34 no 0.000000 1 0.000000 0.000000 1.000000 24.100000 IGS_090 igs rps7|ndhB rps7-ndhB 99805 100123 0 319 IRa 0.012539 8 0 300 300 no 1.000000 4 1.000000 0.012539 1.000000 61.700000 ndhB gene ndhB ndhB 100124 102341 1 2218 IRa 0.002780 12 0 29 60 no 1.000000 4 1.000000 0.002780 1.000000 46.400000 IGS_091 igs ndhB|trnL-CAA ndhB-trnL-CAA 102342 102917 0 576 IRa 0.003503 4 5 21 195 no 0.250000 2 0.500000 0.003503 0.991319 34.000000 trnL-CAA tRNA trnL-CAA trnL-CAA 102918 102998 1 81 IRa 0.000000 0 0 68 114 no 0.000000 1 0.000000 0.000000 1.000000 23.800000 IGS_092 igs trnL-CAA|ycf2 trnL-CAA-ycf2 102999 103945 0 947 IRa 0.008139 15 15 149 84 no 1.000000 4 1.000000 0.008188 0.994720 57.400000 ycf2 gene ycf2 ycf2 103946 110761 -1 6816 IRa 0.009067 119 33 7 1 no 1.000000 4 1.000000 0.009067 0.995158 44.300000 IGS_093 igs ycf2|trnI-CAU ycf2-trnI-CAU 110762 110849 0 88 IRa 0.017045 3 0 2 85 no 0.250000 2 0.500000 0.017045 1.000000 35.500000 trnI-CAU tRNA trnI-CAU trnI-CAU 110850 110923 1 74 IRa 0.000000 0 0 57 11 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_094 igs trnI-CAU|rpl23 trnI-CAU-rpl23 110924 111088 0 165 IRa 0.017606 5 23 131 32 no 0.250000 2 0.500000 0.017606 0.860606 38.800000 rpl23 gene rpl23 rpl23 111089 111370 1 282 IRa 0.010638 6 0 42 53 no 1.000000 4 1.000000 0.010638 1.000000 48.100000 IGS_095 igs rpl23|rpl2 rpl23-rpl2 111371 111388 0 18 IRa 0.000000 0 0 93 35 no 0.000000 1 0.000000 NA 1.000000 21.400000 rpl2 gene rpl2 rpl2 111389 112878 1 1490 IRa 0.004922 14 0 111 15 no 1.000000 4 1.000000 0.004922 1.000000 48.300000 IGS_096 igs rpl2|trnH-GUG rpl2-trnH-GUG 112879 113047 0 169 IRa 0.009091 3 8 118 300 no 1.000000 4 1.000000 0.009203 0.976331 57.500000 trnH-GUG tRNA trnH-GUG trnH-GUG 113048 113122 -1 75 LSC NA 0 75 47 300 no 0.250000 2 0.500000 NA 0.000000 14.500000 IGS_097 igs trnH-GUG|psbA trnH-GUG-psbA 113123 113544 0 422 LSC NA 0 422 122 300 no 0.250000 2 0.500000 NA 0.000000 22.600000 psbA gene psbA psbA 113545 114606 -1 1062 LSC NA 0 1062 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 IGS_098 igs psbA|trnK-UUU psbA-trnK-UUU 114607 114898 0 292 LSC NA 0 292 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 114899 114933 -1 35 LSC NA 0 35 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 matK gene matK matK 115249 116748 -1 1500 LSC NA 0 1500 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 IGS_101 igs matK|trnK-UUU matK-trnK-UUU 116749 117472 0 724 LSC NA 0 724 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 117473 117509 -1 37 LSC NA 0 37 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_102 igs trnK-UUU|rps16 trnK-UUU-rps16 117510 118891 0 1382 LSC NA 0 1382 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 rps16 gene rps16 rps16 118892 120067 -1 1176 LSC NA 0 1176 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 IGS_103 igs rps16|trnQ-UUG rps16-trnQ-UUG 120068 121006 0 939 LSC NA 0 939 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 121007 121078 -1 72 LSC NA 0 72 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_104 igs trnQ-UUG|psbK trnQ-UUG-psbK 121079 121913 0 835 LSC NA 0 835 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 psbK gene psbK psbK 121914 122099 1 186 LSC NA 0 186 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_105 igs psbK|psbI psbK-psbI 122100 122276 0 177 LSC NA 0 177 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 psbI gene psbI psbI 122277 122387 1 111 LSC NA 0 111 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_106 igs psbI|trnS-GCU psbI-trnS-GCU 122388 122990 0 603 LSC NA 0 603 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 trnS-GCU tRNA trnS-GCU trnS-GCU 122991 123078 -1 88 LSC NA 0 88 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_107 igs trnS-GCU|trnG-UCC trnS-GCU-trnG-UCC 123079 124666 0 1588 LSC NA 0 1588 300 300 no 0.250000 2 0.500000 NA 0.000000 32.000000 trnG-UCC_part1 tRNA trnG-UCC trnG-UCC 124667 124689 1 23 LSC NA 0 23 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 trnG-UCC_part2 tRNA trnG-UCC trnG-UCC 125405 125453 1 49 LSC NA 0 49 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_110 igs trnG-UCC|trnR-UCU trnG-UCC-trnR-UCU 125454 125952 0 499 LSC NA 0 499 300 300 no 0.250000 2 0.500000 NA 0.000000 30.100000 trnR-UCU tRNA trnR-UCU trnR-UCU 125953 126024 1 72 LSC NA 0 72 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_111 igs trnR-UCU|atpA trnR-UCU-atpA 126025 126529 0 505 LSC NA 0 505 300 300 no 0.250000 2 0.500000 NA 0.000000 30.200000 atpA gene atpA atpA 126530 128062 -1 1533 LSC NA 0 1533 300 300 no 0.250000 2 0.500000 NA 0.000000 32.100000 IGS_112 igs atpA|atpF atpA-atpF 128063 128128 0 66 LSC NA 0 66 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 atpF gene atpF atpF 128129 129408 -1 1280 LSC NA 0 1280 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 IGS_113 igs atpF|atpH atpF-atpH 129409 130159 0 751 LSC NA 0 751 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 atpH gene atpH atpH 130160 130405 -1 246 LSC NA 0 246 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_114 igs atpH|atpI atpH-atpI 130406 132086 0 1681 LSC NA 0 1681 300 300 no 0.250000 2 0.500000 NA 0.000000 31.800000 atpI gene atpI atpI 132087 132830 -1 744 LSC NA 0 744 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 IGS_115 igs atpI|rps2 atpI-rps2 132831 133043 0 213 LSC NA 0 213 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 rps2 gene rps2 rps2 133044 133754 -1 711 LSC NA 0 711 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 IGS_116 igs rps2|rpoC2 rps2-rpoC2 133755 133987 0 233 LSC NA 0 233 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 rpoC2 gene rpoC2 rpoC2 133988 138163 -1 4176 LSC NA 0 4176 300 300 no 0.250000 2 0.500000 NA 0.000000 27.200000 IGS_117 igs rpoC2|rpoC1 rpoC2-rpoC1 138164 138349 0 186 LSC NA 0 186 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 rpoC1 gene rpoC1 rpoC1 138350 141223 -1 2874 LSC NA 0 2874 300 300 no 0.250000 2 0.500000 NA 0.000000 29.300000 IGS_118 igs rpoC1|rpoB rpoC1-rpoB 141224 141228 0 5 LSC NA 0 5 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 rpoB gene rpoB rpoB 141229 144441 -1 3213 LSC NA 0 3213 300 300 no 0.250000 2 0.500000 NA 0.000000 28.700000 IGS_119 igs rpoB|trnC-GCA rpoB-trnC-GCA 144442 145677 0 1236 LSC NA 0 1236 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 trnC-GCA tRNA trnC-GCA trnC-GCA 145678 145758 1 81 LSC NA 0 81 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_120 igs trnC-GCA|petN trnC-GCA-petN 145759 147218 0 1460 LSC NA 0 1460 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 petN gene petN petN 147219 147308 1 90 LSC NA 0 90 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_121 igs petN|psbM petN-psbM 147309 148527 0 1219 LSC NA 0 1219 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 psbM gene psbM psbM 148528 148632 -1 105 LSC NA 0 105 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_122 igs psbM|trnD-GUC psbM-trnD-GUC 148633 149472 0 840 LSC NA 0 840 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 trnD-GUC tRNA trnD-GUC trnD-GUC 149473 149546 -1 74 LSC NA 0 74 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_123 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 149547 149985 0 439 LSC NA 0 439 300 300 no 0.250000 2 0.500000 NA 0.000000 28.800000 trnY-GUA tRNA trnY-GUA trnY-GUA 149986 150069 -1 84 LSC NA 0 84 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_124 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 150070 150129 0 60 LSC NA 0 60 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 trnE-UUC tRNA trnE-UUC trnE-UUC 150130 150208 -1 79 LSC NA 0 79 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_125 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 150209 151097 0 889 LSC NA 0 889 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 trnT-GGU tRNA trnT-GGU trnT-GGU 151098 151169 1 72 LSC NA 0 72 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_126 igs trnT-GGU|psbD trnT-GGU-psbD 151170 152746 0 1577 LSC NA 0 1577 300 300 no 0.250000 2 0.500000 NA 0.000000 32.000000 psbD gene psbD psbD 152747 153808 1 1062 LSC NA 0 1062 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 psbC gene psbC psbC 153756 155177 1 1422 LSC NA 0 1422 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 IGS_128 igs psbC|trnS-UGA psbC-trnS-UGA 155178 155414 0 237 LSC NA 0 237 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 trnS-UGA tRNA trnS-UGA trnS-UGA 155415 155507 -1 93 LSC NA 0 93 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_129 igs trnS-UGA|psbZ trnS-UGA-psbZ 155508 155840 0 333 LSC NA 0 333 300 300 no 0.250000 2 0.500000 NA 0.000000 26.600000 psbZ gene psbZ psbZ 155841 156029 1 189 LSC NA 0 189 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_130 igs psbZ|trnG-GCC psbZ-trnG-GCC 156030 156796 0 767 LSC NA 0 767 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 trnG-GCC tRNA trnG-GCC trnG-GCC 156797 156867 1 71 LSC NA 0 71 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_131 igs trnG-GCC|trnfM-CAU trnG-GCC-trnfM-CAU 156868 157072 0 205 LSC NA 0 205 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 157073 157146 -1 74 LSC NA 0 74 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_132 igs trnfM-CAU|rps14 trnfM-CAU-rps14 157147 157308 0 162 LSC NA 0 162 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 rps14 gene rps14 rps14 157309 157611 -1 303 LSC NA 0 303 300 300 no 0.250000 2 0.500000 NA 0.000000 26.000000 IGS_133 igs rps14|psaB rps14-psaB 157612 157729 0 118 LSC NA 0 118 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 psaB gene psaB psaB 157730 159934 -1 2205 LSC NA 0 2205 300 300 no 0.250000 2 0.500000 NA 0.000000 30.700000 IGS_134 igs psaB|psaA psaB-psaA 159935 159959 0 25 LSC NA 0 25 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 psaA gene psaA psaA 159960 162212 -1 2253 LSC NA 0 2253 300 300 no 0.250000 2 0.500000 NA 0.000000 30.600000 IGS_135 igs psaA|ycf3 psaA-ycf3 162213 163057 0 845 LSC NA 0 845 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 ycf3 gene ycf3 ycf3 163058 165041 -1 1984 LSC NA 0 1984 300 300 no 0.250000 2 0.500000 NA 0.000000 31.200000 IGS_136 igs ycf3|trnS-GGA ycf3-trnS-GGA 165042 165280 0 239 LSC NA 0 239 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 trnS-GGA tRNA trnS-GGA trnS-GGA 165281 165368 1 88 LSC NA 0 88 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_137 igs trnS-GGA|rps4 trnS-GGA-rps4 165369 165656 0 288 LSC NA 0 288 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 rps4 gene rps4 rps4 165657 166262 -1 606 LSC NA 0 606 300 300 no 0.250000 2 0.500000 NA 0.000000 32.200000 IGS_138 igs rps4|trnT-UGU rps4-trnT-UGU 166263 166629 0 367 LSC NA 0 367 300 300 no 0.250000 2 0.500000 NA 0.000000 27.300000 trnT-UGU tRNA trnT-UGU trnT-UGU 166630 166702 -1 73 LSC NA 0 73 300 300 no 0.250000 2 0.500000 NA 0.000000 25.900000 IGS_139 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 166703 1129 0 1767 LSC 0.080790 161 693 300 71 no 1.000000 4 1.000000 0.078139 0.619128 77.600000