Hotspot

rpl23-rpl2

IRa · 152369-152386 · 18 bp

Back to Menonvillea

Pi 0.0556

MarkerSeek score 71.30

Primer available yes

Label rpl23-rpl2

Feature Metadata

label_name: rpl23-rpl2
feature_type: igs
region: IRa
length_bp: 18
variable_sites: 1
pi: 0.0556
unique_haplotype_count: 2
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 71.30

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
rpl23-rpl2_p1	CGCTTCAACCGGGTTATTCT	TGCTCGGGGTAGAAGTTTTG	50.0	50.0	58.3	57.8	105 bp	1.0	77.2
rpl23-rpl2_p2	CGCTTCAACCGGGTTATTCT	GCTCGGGGTAGAAGTTTTGT	50.0	50.0	58.3	57.8	104 bp	1.0	77.2
rpl23-rpl2_p3	CGCTTCAACCGGGTTATTCT	GTGCTCGGGGTAGAAGTTTT	50.0	50.0	58.3	57.8	106 bp	1.0	77.2
rpl23-rpl2_p4	ATCATTACGCTTCAACCGGG	TGCTCGGGGTAGAAGTTTTG	50.0	50.0	58.3	57.8	112 bp	1.0	76.6
rpl23-rpl2_p5	ATCATTACGCTTCAACCGGG	GCTCGGGGTAGAAGTTTTGT	50.0	50.0	58.3	57.8	111 bp	1.0	76.6