feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 5 77 -1 73 LSC 0.000000 0 0 65 10 no 0.000000 1 0.000000 NA 1.000000 19.500000 IGS_001 igs trnH|psbA trnH-psbA 78 328 0 251 LSC 0.084034 20 13 138 45 yes 1.000000 2 1.000000 NA 0.948207 78.100000 psbA gene psbA psbA 329 1390 -1 1062 LSC 0.008475 9 0 51 25 yes 1.000000 2 1.000000 NA 1.000000 50.500000 IGS_002 igs psbA|trnK psbA-trnK 1391 1663 0 273 LSC 0.021978 6 0 284 23 no 1.000000 2 1.000000 NA 1.000000 51.900000 trnK_part2 tRNA trnK trnK 1664 1698 -1 35 LSC 0.028571 1 0 55 45 no 1.000000 2 1.000000 NA 1.000000 57.300000 matK gene matK matK 1998 3578 -1 1581 LSC 0.024035 38 0 34 16 no 1.000000 2 1.000000 NA 1.000000 58.600000 IGS_005 igs matK|trnK matK-trnK 3579 4238 0 660 LSC 0.013678 9 2 176 95 no 1.000000 2 1.000000 NA 0.996970 59.000000 trnK_part1 tRNA trnK trnK 4239 4275 -1 37 LSC 0.000000 0 0 190 58 no 0.000000 1 0.000000 NA 1.000000 23.100000 IGS_006 igs trnK|rps16 trnK-rps16 4276 5013 0 738 LSC 0.032305 22 57 227 99 yes 1.000000 2 1.000000 NA 0.922764 73.500000 rps16 gene rps16 rps16 5014 6165 -1 1152 LSC 0.015887 18 19 7 108 no 1.000000 2 1.000000 NA 0.983507 55.000000 IGS_007 igs rps16|trnQ rps16-trnQ 6166 6613 0 448 LSC 0.024887 11 6 231 56 no 1.000000 2 1.000000 NA 0.986607 60.300000 trnQ tRNA trnQ trnQ 6614 6685 -1 72 LSC 0.013889 1 0 81 4 no 1.000000 2 1.000000 NA 1.000000 45.800000 IGS_008 igs trnQ|psbK trnQ-psbK 6686 7029 0 344 LSC 0.023529 8 4 15 12 no 1.000000 2 1.000000 NA 0.988372 53.900000 psbK gene psbK psbK 7030 7215 1 186 LSC 0.021505 4 0 10 25 no 1.000000 2 1.000000 NA 1.000000 50.600000 IGS_009 igs psbK|psbI psbK-psbI 7216 7622 0 407 LSC 0.036176 14 20 75 155 yes 1.000000 2 1.000000 NA 0.950860 70.700000 psbI gene psbI psbI 7623 7733 1 111 LSC 0.000000 0 0 4 44 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_010 igs psbI|trnS psbI-trnS 7734 7825 0 92 LSC 0.032609 3 0 115 98 no 1.000000 2 1.000000 NA 1.000000 63.600000 trnS tRNA trnS trnS 7826 7913 1 88 LSC 0.000000 0 0 35 10 no 0.000000 1 0.000000 NA 1.000000 19.500000 IGS_011 igs trnS|trnG trnS-trnG 7914 8475 0 562 LSC 0.023173 13 1 123 88 no 1.000000 2 1.000000 NA 0.998221 63.000000 trnG_part1 tRNA trnG trnG 8476 8498 1 23 LSC 0.000000 0 0 4 65 no 0.000000 1 0.000000 NA 1.000000 19.100000 trnG_part2 tRNA trnG trnG 9234 9282 1 49 LSC 0.000000 0 0 107 76 no 0.000000 1 0.000000 NA 1.000000 24.400000 IGS_014 igs trnG|trnR trnG-trnR 9283 9439 0 157 LSC 0.044872 7 1 156 84 no 1.000000 2 1.000000 NA 0.993631 70.200000 trnR tRNA trnR trnR 9440 9511 1 72 LSC 0.000000 0 0 5 12 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_015 igs trnR|atpA trnR-atpA 9512 9792 0 281 LSC 0.021429 6 1 77 13 no 1.000000 2 1.000000 NA 0.996441 51.100000 atpA gene atpA atpA 9793 11316 -1 1524 LSC 0.010499 16 0 44 23 no 1.000000 2 1.000000 NA 1.000000 51.500000 IGS_016 igs atpA|atpF atpA-atpF 11317 11380 0 64 LSC 0.015625 1 0 104 125 no 1.000000 2 1.000000 NA 1.000000 54.300000 atpF gene atpF atpF 11381 12658 -1 1278 LSC 0.017214 22 0 40 10 no 1.000000 2 1.000000 NA 1.000000 54.400000 IGS_017 igs atpF|atpH atpF-atpH 12659 13132 0 474 LSC 0.049569 23 10 256 300 yes 1.000000 2 1.000000 NA 0.978903 86.500000 atpH gene atpH atpH 13133 13378 -1 246 LSC 0.000000 0 0 12 176 no 0.000000 1 0.000000 NA 1.000000 19.700000 IGS_018 igs atpH|atpI atpH-atpI 13379 13865 0 487 LSC 0.016529 8 3 258 300 no 1.000000 2 1.000000 NA 0.993840 66.500000 atpI gene atpI atpI 13866 14615 -1 750 LSC 0.004000 3 0 30 156 no 1.000000 2 1.000000 NA 1.000000 48.300000 IGS_019 igs atpI|rps2 atpI-rps2 14616 14839 0 224 LSC 0.018868 4 12 22 16 no 1.000000 2 1.000000 NA 0.946429 54.200000 rps2 gene rps2 rps2 14840 15565 -1 726 LSC 0.011019 8 0 34 118 no 1.000000 2 1.000000 NA 1.000000 52.600000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 15566 15782 0 217 LSC 0.015228 3 20 300 1 no 1.000000 2 1.000000 NA 0.907834 49.800000 rpoC2 gene rpoC2 rpoC2 15783 19922 -1 4140 LSC 0.011611 48 6 6 79 no 1.000000 2 1.000000 NA 0.998551 46.100000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 19923 20103 0 181 LSC 0.027624 5 0 140 3 no 1.000000 2 1.000000 NA 1.000000 53.600000 rpoC1 gene rpoC1 rpoC1 20104 22920 -1 2817 LSC 0.006747 19 1 21 12 no 1.000000 2 1.000000 NA 0.999645 45.800000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 22921 22946 0 26 LSC 0.038462 1 0 189 22 no 1.000000 2 1.000000 NA 1.000000 61.300000 rpoB gene rpoB rpoB 22947 26165 -1 3219 LSC 0.006213 20 0 13 128 no 1.000000 2 1.000000 NA 1.000000 44.800000 IGS_023 igs rpoB|trnC rpoB-trnC 26166 27128 0 963 LSC 0.027368 26 13 171 97 no 1.000000 2 1.000000 NA 0.986501 68.000000 trnC tRNA trnC trnC 27129 27199 1 71 LSC 0.000000 0 0 23 26 no 0.000000 1 0.000000 NA 1.000000 20.500000 IGS_024 igs trnC|ycf6 trnC-ycf6 27200 27772 0 573 LSC 0.010563 6 5 94 115 no 1.000000 2 1.000000 NA 0.991274 57.100000 ycf6 gene ycf6 ycf6 27773 27862 1 90 LSC 0.000000 0 0 116 25 no 0.000000 1 0.000000 NA 1.000000 20.600000 IGS_025 igs ycf6|psbM ycf6-psbM 27863 28414 0 552 LSC 0.027473 15 6 206 243 yes 1.000000 2 1.000000 NA 0.989130 74.600000 psbM gene psbM psbM 28415 28519 -1 105 LSC 0.000000 0 0 14 138 no 0.000000 1 0.000000 NA 1.000000 19.800000 IGS_026 igs psbM|trnD psbM-trnD 28520 29554 0 1035 LSC 0.017839 18 26 119 88 no 1.000000 2 1.000000 NA 0.974879 63.000000 trnD tRNA trnD trnD 29555 29628 -1 74 LSC 0.000000 0 0 72 14 no 0.000000 1 0.000000 NA 1.000000 19.800000 IGS_027 igs trnD|trnY trnD-trnY 29629 30063 0 435 LSC 0.043678 19 0 146 99 yes 1.000000 2 1.000000 NA 1.000000 72.900000 trnY tRNA trnY trnY 30064 30147 -1 84 LSC 0.000000 0 0 9 15 no 0.000000 1 0.000000 NA 1.000000 19.400000 IGS_028 igs trnY|trnE trnY-trnE 30148 30206 0 59 LSC 0.016949 1 0 93 123 no 1.000000 2 1.000000 NA 1.000000 54.200000 trnE tRNA trnE trnE 30207 30279 -1 73 LSC 0.000000 0 0 43 50 no 0.000000 1 0.000000 NA 1.000000 22.000000 IGS_029 igs trnE|trnT trnE-trnT 30280 30947 0 668 LSC 0.031056 20 24 116 129 yes 1.000000 2 1.000000 NA 0.964072 73.600000 trnT tRNA trnT trnT 30948 31019 1 72 LSC 0.000000 0 0 57 57 no 0.000000 1 0.000000 NA 1.000000 23.000000 IGS_030 igs trnT|psbD trnT-psbD 31020 32275 0 1256 LSC 0.023673 29 31 129 227 no 1.000000 2 1.000000 NA 0.975318 69.400000 psbD gene psbD psbD 32276 33337 1 1062 LSC 0.004708 5 0 117 183 no 1.000000 2 1.000000 NA 1.000000 55.200000 psbC gene psbC psbC 33321 34706 1 1386 LSC 0.009380 13 0 16 73 no 1.000000 2 1.000000 NA 1.000000 50.300000 IGS_032 igs psbC|trnS psbC-trnS 34707 34889 0 183 LSC 0.044944 8 5 128 31 no 1.000000 2 1.000000 NA 0.972678 68.200000 trnS tRNA trnS trnS 34890 34982 1 93 LSC 0.010753 1 0 77 1 no 1.000000 2 1.000000 NA 1.000000 43.800000 IGS_033 igs trnS|ycf9 trnS-ycf9 34983 35329 0 347 LSC 0.028902 10 1 61 14 yes 1.000000 2 1.000000 NA 0.997118 56.400000 ycf9 gene ycf9 ycf9 35330 35518 1 189 LSC 0.015873 3 0 0 18 no 1.000000 2 1.000000 NA 1.000000 46.600000 IGS_034 igs ycf9|trnG ycf9-trnG 35519 36022 0 504 LSC 0.027778 14 0 94 71 no 1.000000 2 1.000000 NA 1.000000 63.000000 IGS_035 igs trnG|trnfM trnG-trnfM 36094 36237 0 144 LSC 0.020979 3 1 77 111 no 1.000000 2 1.000000 NA 0.993056 56.000000 trnfM tRNA trnfM trnfM 36238 36311 -1 74 LSC 0.000000 0 0 72 37 no 0.000000 1 0.000000 NA 1.000000 21.500000 IGS_036 igs trnfM|rps14 trnfM-rps14 36312 36471 0 160 LSC 0.018750 3 0 146 108 no 1.000000 2 1.000000 NA 1.000000 56.400000 rps14 gene rps14 rps14 36472 36774 -1 303 LSC 0.006601 2 0 12 119 no 1.000000 2 1.000000 NA 1.000000 42.300000 IGS_037 igs rps14|psaB rps14-psaB 36775 36907 0 133 LSC 0.007576 1 1 128 156 no 1.000000 2 1.000000 NA 0.992481 52.200000 psaB gene psaB psaB 36908 39112 -1 2205 LSC 0.007710 17 0 13 300 no 1.000000 2 1.000000 NA 1.000000 47.700000 IGS_038 igs psaB|psaA psaB-psaA 39113 39137 0 25 LSC 0.000000 0 0 176 300 no 0.000000 1 0.000000 NA 1.000000 31.900000 psaA gene psaA psaA 39138 41390 -1 2253 LSC 0.004882 11 0 201 74 no 1.000000 2 1.000000 NA 1.000000 50.500000 IGS_039 igs psaA|ycf3 psaA-ycf3 41391 42116 0 726 LSC 0.013947 10 9 152 205 no 1.000000 2 1.000000 NA 0.987603 64.300000 ycf3 gene ycf3 ycf3 42117 43311 -1 1195 LSC 0.009267 11 8 72 18 no 1.000000 2 1.000000 NA 0.993305 51.100000 IGS_040 igs ycf3|trnS ycf3-trnS 43312 44386 0 1075 LSC 0.010309 11 8 39 89 no 1.000000 2 1.000000 NA 0.992558 53.300000 trnS tRNA trnS trnS 44387 44473 1 87 LSC 0.000000 0 0 171 2 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_041 igs trnS|rps4 trnS-rps4 44474 44761 0 288 LSC 0.017794 5 7 258 59 no 1.000000 2 1.000000 NA 0.975694 54.500000 rps4 gene rps4 rps4 44762 45367 -1 606 LSC 0.006601 4 0 11 186 no 1.000000 2 1.000000 NA 1.000000 48.400000 IGS_042 igs rps4|trnT rps4-trnT 45368 45763 0 396 LSC 0.025641 10 6 20 79 no 1.000000 2 1.000000 NA 0.984848 57.200000 trnT tRNA trnT trnT 45764 45836 -1 73 LSC 0.000000 0 0 3 6 no 0.000000 1 0.000000 NA 1.000000 19.000000 IGS_043 igs trnT|trnL trnT-trnL 45837 46702 0 866 LSC 0.016349 12 132 76 157 no 1.000000 2 1.000000 NA 0.847575 60.500000 trnL_part1 tRNA trnL trnL 46703 46737 1 35 LSC 0.000000 0 0 18 122 no 0.000000 1 0.000000 NA 1.000000 20.100000 trnL_part2 tRNA trnL trnL 47050 47099 1 50 LSC 0.000000 0 0 80 116 no 0.000000 1 0.000000 NA 1.000000 24.800000 IGS_046 igs trnL|trnF trnL-trnF 47100 47452 0 353 LSC 0.019886 7 1 130 106 no 1.000000 2 1.000000 NA 0.997167 58.300000 trnF tRNA trnF trnF 47453 47525 1 73 LSC 0.000000 0 0 73 33 no 0.000000 1 0.000000 NA 1.000000 21.200000 IGS_047 igs trnF|ndhJ trnF-ndhJ 47526 48091 0 566 LSC 0.031858 18 1 146 36 no 1.000000 2 1.000000 NA 0.998233 64.200000 ndhJ gene ndhJ ndhJ 48092 48570 -1 479 LSC 0.010661 5 10 19 35 no 1.000000 2 1.000000 NA 0.979123 50.800000 IGS_048 igs ndhJ|psbG ndhJ-psbG 48571 48672 0 102 LSC 0.029412 3 0 153 300 no 1.000000 2 1.000000 NA 1.000000 65.900000 psbG gene psbG psbG 48673 49350 -1 678 LSC 0.000000 0 0 23 181 no 0.000000 1 0.000000 NA 1.000000 26.700000 IGS_049 igs psbG|ndhC psbG-ndhC 49351 49405 0 55 LSC 0.000000 0 10 300 126 no 1.000000 2 1.000000 NA 0.818182 48.100000 ndhC gene ndhC ndhC 49406 49768 -1 363 LSC 0.013774 5 0 300 11 no 1.000000 2 1.000000 NA 1.000000 47.600000 IGS_050 igs ndhC|trnV ndhC-trnV 49769 50662 0 894 LSC 0.018670 16 37 24 90 no 1.000000 2 1.000000 NA 0.958613 60.200000 trnV_part2 tRNA trnV trnV 50663 50697 -1 35 LSC 0.000000 0 0 5 55 no 0.000000 1 0.000000 NA 1.000000 19.100000 trnV_part1 tRNA trnV trnV 51307 51345 -1 39 LSC 0.000000 0 0 187 68 no 0.000000 1 0.000000 NA 1.000000 23.800000 IGS_053 igs trnV|trnM trnV-trnM 51346 51529 0 184 LSC 0.010870 2 0 226 135 no 1.000000 2 1.000000 NA 1.000000 53.900000 trnM tRNA trnM trnM 51530 51602 1 73 LSC 0.000000 0 0 108 62 no 0.000000 1 0.000000 NA 1.000000 23.400000 IGS_054 igs trnM|atpE trnM-atpE 51603 51684 0 82 LSC 0.012346 1 1 181 107 no 1.000000 2 1.000000 NA 0.987805 53.800000 atpE gene atpE atpE 51685 52083 -1 399 LSC 0.002506 1 0 19 53 no 1.000000 2 1.000000 NA 1.000000 42.400000 atpB gene atpB atpB 52080 53576 -1 1497 LSC 0.004676 7 0 287 104 no 1.000000 2 1.000000 NA 1.000000 54.200000 IGS_056 igs atpB|rbcL atpB-rbcL 53577 54364 0 788 LSC 0.016603 13 5 167 300 no 1.000000 2 1.000000 NA 0.993655 66.400000 rbcL gene rbcL rbcL 54365 55804 1 1440 LSC 0.005556 8 0 86 109 no 1.000000 2 1.000000 NA 1.000000 53.400000 IGS_057 igs rbcL|accD rbcL-accD 55805 56497 0 693 LSC 0.023290 16 6 3 44 no 1.000000 2 1.000000 NA 0.991342 58.200000 accD gene accD accD 56498 57979 1 1482 LSC 0.012821 19 0 60 36 no 1.000000 2 1.000000 NA 1.000000 53.800000 IGS_058 igs accD|psaI accD-psaI 57980 58624 0 645 LSC 0.024806 16 0 29 227 no 1.000000 2 1.000000 NA 1.000000 60.200000 psaI gene psaI psaI 58625 58738 1 114 LSC 0.000000 0 0 48 113 no 0.000000 1 0.000000 NA 1.000000 22.400000 IGS_059 igs psaI|ycf4 psaI-ycf4 58739 59177 0 439 LSC 0.036446 16 0 162 55 no 1.000000 2 1.000000 NA 1.000000 65.500000 ycf4 gene ycf4 ycf4 59178 59732 1 555 LSC 0.009009 5 0 110 4 no 1.000000 2 1.000000 NA 1.000000 48.300000 IGS_060 igs ycf4|ycf10/cemA ycf4-ycf10/cemA 59733 60213 0 481 LSC 0.021053 10 6 42 44 no 1.000000 2 1.000000 NA 0.987526 57.700000 ycf10/cemA gene ycf10/cemA ycf10/cemA 60214 60903 1 690 LSC 0.007246 5 0 71 5 no 1.000000 2 1.000000 NA 1.000000 48.300000 IGS_061 igs ycf10/cemA|petA ycf10/cemA-petA 60904 61130 0 227 LSC 0.022422 5 4 176 18 no 1.000000 2 1.000000 NA 0.982379 53.400000 petA gene petA petA 61131 62093 1 963 LSC 0.009346 9 0 43 6 no 1.000000 2 1.000000 NA 1.000000 49.600000 IGS_062 igs petA|psbJ petA-psbJ 62094 63035 0 942 LSC 0.024442 23 1 68 134 yes 1.000000 2 1.000000 NA 0.998938 63.000000 psbJ gene psbJ psbJ 63036 63158 -1 123 LSC 0.000000 0 0 14 11 no 0.000000 1 0.000000 NA 1.000000 19.600000 IGS_063 igs psbJ|psbL psbJ-psbL 63159 63301 0 143 LSC 0.013986 2 0 137 123 no 1.000000 2 1.000000 NA 1.000000 54.800000 psbL gene psbL psbL 63302 63418 -1 117 LSC 0.000000 0 0 22 6 no 0.000000 1 0.000000 NA 1.000000 19.200000 IGS_064 igs psbL|psbF psbL-psbF 63419 63439 0 21 LSC 0.047619 1 0 139 144 yes 1.000000 2 1.000000 NA 1.000000 75.300000 psbF gene psbF psbF 63440 63559 -1 120 LSC 0.000000 0 0 14 24 no 0.000000 1 0.000000 NA 1.000000 19.800000 IGS_065 igs psbF|psbE psbF-psbE 63560 63568 0 9 LSC 0.000000 0 0 134 15 no 0.000000 1 0.000000 NA 1.000000 19.900000 psbE gene psbE psbE 63569 63820 -1 252 LSC 0.003968 1 0 143 36 no 1.000000 2 1.000000 NA 1.000000 42.500000 IGS_066 igs psbE|ORF31 psbE-ORF31 63821 64752 0 932 LSC 0.020541 19 7 236 30 no 1.000000 2 1.000000 NA 0.992489 58.500000 ORF31 gene ORF31 ORF31 64753 64848 1 96 LSC 0.020833 2 0 71 108 no 1.000000 2 1.000000 NA 1.000000 54.800000 IGS_067 igs ORF31|petG ORF31-petG 64849 65045 0 197 LSC 0.015228 3 0 35 29 no 1.000000 2 1.000000 NA 1.000000 48.400000 petG gene petG petG 65046 65159 1 114 LSC 0.008772 1 0 19 8 no 1.000000 2 1.000000 NA 1.000000 43.100000 IGS_068 igs petG|trnW petG-trnW 65160 65289 0 130 LSC 0.046154 6 0 84 80 no 1.000000 2 1.000000 NA 1.000000 70.000000 trnW tRNA trnW trnW 65290 65362 -1 73 LSC 0.000000 0 0 38 7 no 0.000000 1 0.000000 NA 1.000000 19.300000 IGS_069 igs trnW|trnP trnW-trnP 65363 65553 0 191 LSC 0.031579 6 1 111 166 no 1.000000 2 1.000000 NA 0.994764 64.500000 trnP tRNA trnP trnP 65554 65627 -1 74 LSC 0.000000 0 0 46 92 no 0.000000 1 0.000000 NA 1.000000 22.200000 IGS_070 igs trnP|psiJ trnP-psiJ 65628 65980 0 353 LSC 0.023529 8 13 120 101 no 1.000000 2 1.000000 NA 0.963173 63.200000 psiJ gene psiJ psiJ 65981 66121 1 141 LSC 0.007092 1 0 73 7 no 1.000000 2 1.000000 NA 1.000000 42.100000 IGS_071 igs psiJ|rps18 psiJ-rps18 66122 66971 0 850 LSC 0.022539 19 7 39 154 no 1.000000 2 1.000000 NA 0.991765 60.400000 rps18 gene rps18 rps18 66972 67277 1 306 LSC 0.003268 1 0 10 66 no 1.000000 2 1.000000 NA 1.000000 40.300000 IGS_072 igs rps18|rpl20 rps18-rpl20 67278 67543 0 266 LSC 0.033835 9 0 151 147 no 1.000000 2 1.000000 NA 1.000000 68.000000 rpl20 gene rpl20 rpl20 67544 67897 -1 354 LSC 0.005650 2 0 1 37 no 1.000000 2 1.000000 NA 1.000000 41.900000 IGS_073 igs rpl20|rps12 rpl20-rps12 67898 68662 0 765 LSC 0.022368 17 5 133 41 no 1.000000 2 1.000000 NA 0.993464 60.300000 rps12_part1 gene rps12 rps12 68663 68776 -1 114 LSC 0.017544 2 0 38 90 no 1.000000 2 1.000000 NA 1.000000 50.400000 IGS_074 igs rps12|clpP rps12-clpP 68777 68959 0 183 LSC 0.016393 3 0 62 21 no 1.000000 2 1.000000 NA 1.000000 48.500000 clpP gene clpP clpP 68960 71013 -1 2054 LSC 0.009346 19 21 10 123 no 1.000000 2 1.000000 NA 0.989776 49.700000 IGS_075 igs clpP|psbB clpP-psbB 71014 71502 0 489 LSC 0.018405 9 0 38 137 no 1.000000 2 1.000000 NA 1.000000 54.900000 psbB gene psbB psbB 71503 73029 1 1527 LSC 0.004584 7 0 20 46 no 1.000000 2 1.000000 NA 1.000000 47.800000 IGS_076 igs psbB|psbT psbB-psbT 73030 73217 0 188 LSC 0.026882 5 2 300 118 no 1.000000 2 1.000000 NA 0.989362 62.800000 psbT gene psbT psbT 73218 73319 1 102 LSC 0.000000 0 0 70 16 no 0.000000 1 0.000000 NA 1.000000 20.000000 IGS_077 igs psbT|psbN psbT-psbN 73320 73384 0 65 LSC 0.046154 3 0 172 118 yes 1.000000 2 1.000000 NA 1.000000 72.900000 psbN gene psbN psbN 73385 73516 -1 132 LSC 0.007576 1 0 17 20 no 1.000000 2 1.000000 NA 1.000000 43.100000 IGS_078 igs psbN|psbH psbN-psbH 73517 73622 0 106 LSC 0.009615 1 2 13 13 no 1.000000 2 1.000000 NA 0.981132 45.800000 psbH gene psbH psbH 73623 73844 1 222 LSC 0.009009 2 0 85 0 no 1.000000 2 1.000000 NA 1.000000 42.700000 IGS_079 igs psbH|petB psbH-petB 73845 73980 0 136 LSC 0.037037 5 1 77 128 no 1.000000 2 1.000000 NA 0.992647 65.200000 petB gene petB petB 73981 75419 1 1439 LSC 0.009763 14 5 28 65 no 1.000000 2 1.000000 NA 0.996525 51.800000 IGS_080 igs petB|petD petB-petD 75420 75616 0 197 LSC 0.010309 2 3 38 123 no 1.000000 2 1.000000 NA 0.984772 47.700000 petD gene petD petD 75617 76823 1 1207 LSC 0.009228 11 15 130 88 no 1.000000 2 1.000000 NA 0.987572 56.800000 IGS_081 igs petD|rpoA petD-rpoA 76824 77020 0 197 LSC 0.015228 3 0 183 20 no 1.000000 2 1.000000 NA 1.000000 47.800000 rpoA gene rpoA rpoA 77021 78004 -1 984 LSC 0.006116 6 3 36 34 no 1.000000 2 1.000000 NA 0.996951 50.100000 IGS_082 igs rpoA|rps11 rpoA-rps11 78005 78073 0 69 LSC 0.014493 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 60.800000 rps11 gene rps11 rps11 78074 78490 -1 417 LSC 0.004796 2 0 34 129 no 1.000000 2 1.000000 NA 1.000000 45.200000 IGS_083 igs rps11|rpl36 rps11-rpl36 78491 78580 0 90 LSC 0.000000 0 0 48 39 no 0.000000 1 0.000000 NA 1.000000 21.700000 rpl36 gene rpl36 rpl36 78581 78694 -1 114 LSC 0.008772 1 0 138 39 no 1.000000 2 1.000000 NA 1.000000 45.500000 IGS_084 igs rpl36|rps8 rpl36-rps8 78695 79164 0 470 LSC 0.038380 18 1 74 89 yes 1.000000 2 1.000000 NA 0.997872 68.900000 rps8 gene rps8 rps8 79165 79569 -1 405 LSC 0.014815 6 0 19 8 no 1.000000 2 1.000000 NA 1.000000 48.800000 IGS_085 igs rps8|rpl14 rps8-rpl14 79570 79788 0 219 LSC 0.013699 3 0 23 60 no 1.000000 2 1.000000 NA 1.000000 47.100000 rpl14 gene rpl14 rpl14 79789 80157 -1 369 LSC 0.005420 2 0 105 97 no 1.000000 2 1.000000 NA 1.000000 49.300000 IGS_086 igs rpl14|rpl16 rpl14-rpl16 80158 80284 0 127 LSC 0.007874 1 0 196 135 no 1.000000 2 1.000000 NA 1.000000 52.200000 rpl16 gene rpl16 rpl16 80285 81797 -1 1513 LSC 0.018779 28 22 29 66 no 1.000000 2 1.000000 NA 0.985459 58.100000 IGS_087 igs rpl16|rps3 rpl16-rps3 81798 81979 0 182 LSC 0.028736 5 8 12 2 no 1.000000 2 1.000000 NA 0.956044 58.300000 rps3 gene rps3 rps3 81980 82633 -1 654 LSC 0.009174 6 0 16 13 no 1.000000 2 1.000000 NA 1.000000 50.000000 rpl22 gene rpl22 rpl22 82618 83100 -1 483 LSC 0.014493 7 0 109 82 no 1.000000 2 1.000000 NA 1.000000 55.800000 IGS_089 igs rpl22|rps19 rpl22-rps19 83101 83155 0 55 LSC 0.000000 0 1 11 27 no 1.000000 2 1.000000 NA 0.981818 40.100000 rps19 gene rps19 rps19 83156 83434 -1 279 LSC 0.010753 3 0 66 24 no 1.000000 2 1.000000 NA 1.000000 45.500000 IGS_090 igs rps19|rpl2 rps19-rpl2 83435 83488 0 54 IRb 0.018519 1 0 50 201 no 1.000000 2 1.000000 NA 1.000000 51.900000 rpl2 gene rpl2 rpl2 83489 84995 -1 1507 IRb 0.001991 3 0 29 15 no 1.000000 2 1.000000 NA 1.000000 46.000000 IGS_091 igs rpl2|rpl23 rpl2-rpl23 84996 85013 0 18 IRb 0.055556 1 0 58 96 yes 1.000000 2 1.000000 NA 1.000000 71.300000 rpl23 gene rpl23 rpl23 85014 85295 -1 282 IRb 0.003546 1 0 2 300 no 1.000000 2 1.000000 NA 1.000000 39.700000 IGS_092 igs rpl23|trnI rpl23-trnI 85296 85463 0 168 IRb 0.000000 0 0 185 134 no 0.000000 1 0.000000 NA 1.000000 28.800000 IGS_093 igs trnI|ycf2 trnI-ycf2 85538 85625 0 88 IRb 0.011364 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 59.000000 ycf2 gene ycf2 ycf2 85626 92492 1 6867 IRb 0.002482 17 18 27 300 no 1.000000 2 1.000000 NA 0.997379 41.200000 IGS_094 igs ycf2|orf77 ycf2-orf77 92493 92676 0 184 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 orf77 gene orf77 orf77 92677 92862 1 186 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_095 igs orf77|trnL orf77-trnL 92863 93419 0 557 IRb 0.000000 0 12 300 136 no 1.000000 2 1.000000 NA 0.978456 55.100000 IGS_096 igs trnL|ndhB trnL-ndhB 93501 94082 0 582 IRb 0.005155 3 0 300 300 no 1.000000 2 1.000000 NA 1.000000 61.300000 ndhB gene ndhB ndhB 94083 95937 -1 1855 IRb 0.001078 2 0 300 162 no 1.000000 2 1.000000 NA 1.000000 55.800000 IGS_097 igs ndhB|rps7 ndhB-rps7 95938 96616 0 679 IRb 0.014728 10 0 150 300 no 1.000000 2 1.000000 NA 1.000000 63.500000 rps7 gene rps7 rps7 96617 97084 -1 468 IRb 0.000000 0 0 257 300 no 0.000000 1 0.000000 NA 1.000000 37.300000 IGS_098 igs rps7|trnV rps7-trnV 97085 99851 0 2767 IRb 0.002896 8 5 300 258 no 1.000000 2 1.000000 NA 0.998193 58.000000 IGS_099 igs trnV|rrn16S trnV-rrn16S 99924 100154 0 231 IRb 0.004329 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 55.000000 rrn16S rRNA rrn16S rrn16S 100155 101645 1 1491 IRb 0.000000 0 0 44 300 no 0.000000 1 0.000000 NA 1.000000 28.300000 IGS_100 igs rrn16S|trnI rrn16S-trnI 101646 101868 0 223 IRb 0.000000 0 0 300 155 no 0.000000 1 0.000000 NA 1.000000 30.400000 trnI_part1 tRNA trnI trnI 101869 101905 1 37 IRb 0.000000 0 0 300 118 no 0.000000 1 0.000000 NA 1.000000 27.600000 trnI_part2 tRNA trnI trnI 102855 102889 1 35 IRb 0.000000 0 0 132 300 no 0.000000 1 0.000000 NA 1.000000 28.600000 IGS_103 igs trnI|trnA trnI-trnA 102890 102953 0 64 IRb 0.000000 0 0 167 236 no 0.000000 1 0.000000 NA 1.000000 31.300000 trnA_part1 tRNA trnA trnA 102954 102991 1 38 IRb 0.000000 0 0 231 198 no 0.000000 1 0.000000 NA 1.000000 33.600000 trnA_part2 tRNA trnA trnA 103796 103830 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_106 igs trnA|rrn23S trnA-rrn23S 103831 103982 0 152 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 103983 106792 1 2810 IRb 0.000712 2 0 300 236 no 1.000000 2 1.000000 NA 1.000000 56.400000 IGS_107 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 106793 106890 0 98 IRb 0.000000 0 0 300 138 no 0.000000 1 0.000000 NA 1.000000 29.100000 rrn4.5S rRNA rrn4.5S rrn4.5S 106891 106993 1 103 IRb 0.000000 0 0 300 35 no 0.000000 1 0.000000 NA 1.000000 21.400000 IGS_108 igs rrn4.5S|rrn5s rrn4.5S-rrn5s 106994 107240 0 247 IRb 0.004115 1 4 300 20 no 1.000000 2 1.000000 NA 0.983806 42.900000 rrn5s rRNA rrn5s rrn5s 107241 107361 1 121 IRb 0.008264 1 0 211 300 no 1.000000 2 1.000000 NA 1.000000 57.300000 IGS_109 igs rrn5s|trnR rrn5s-trnR 107362 107609 0 248 IRb 0.000000 0 0 100 229 no 0.000000 1 0.000000 NA 1.000000 26.200000 trnR tRNA trnR trnR 107610 107683 1 74 IRb 0.000000 0 0 300 155 no 0.000000 1 0.000000 NA 1.000000 30.400000 IGS_110 igs trnR|trnN trnR-trnN 107684 108329 0 646 IRb 0.009390 6 7 300 300 no 1.000000 2 1.000000 NA 0.989164 65.200000 trnN tRNA trnN trnN 108330 108401 -1 72 IRb 0.000000 0 0 19 300 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_111 igs trnN|ycf1 trnN-ycf1 108402 108734 0 333 IRb 0.000000 0 0 91 300 no 0.000000 1 0.000000 NA 1.000000 26.300000 ycf1 gene ycf1 ycf1 108735 109781 1 1047 IRb 0.001910 2 0 300 189 no 1.000000 2 1.000000 NA 1.000000 59.000000 ndhF gene ndhF ndhF 109743 111983 -1 2241 SSC 0.017849 40 0 300 13 no 1.000000 2 1.000000 NA 1.000000 53.400000 IGS_113 igs ndhF|rpl32 ndhF-rpl32 111984 112842 0 859 SSC 0.038050 32 18 28 40 yes 1.000000 2 1.000000 NA 0.979045 69.700000 rpl32 gene rpl32 rpl32 112843 113001 1 159 SSC 0.012579 2 0 52 29 no 1.000000 2 1.000000 NA 1.000000 46.900000 IGS_114 igs rpl32|trnL rpl32-trnL 113002 113733 0 732 SSC 0.043103 30 36 114 65 yes 1.000000 2 1.000000 NA 0.950820 77.900000 IGS_115 igs trnL|ycf5 trnL-ycf5 113814 113935 0 122 SSC 0.098361 12 0 14 276 yes 1.000000 2 1.000000 NA 1.000000 73.300000 ycf5 gene ycf5 ycf5 113936 114916 1 981 SSC 0.014271 14 0 33 16 no 1.000000 2 1.000000 NA 1.000000 53.200000 IGS_116 igs ycf5|ndhD ycf5-ndhD 114917 115146 0 230 SSC 0.030568 7 1 1 26 no 1.000000 2 1.000000 NA 0.995652 55.600000 ndhD gene ndhD ndhD 115147 116667 -1 1521 SSC 0.015122 23 0 11 7 no 1.000000 2 1.000000 NA 1.000000 52.900000 IGS_117 igs ndhD|psaC ndhD-psaC 116668 116801 0 134 SSC 0.022388 3 0 51 300 no 1.000000 2 1.000000 NA 1.000000 54.200000 psaC gene psaC psaC 116802 117047 -1 246 SSC 0.000000 0 0 44 241 no 0.000000 1 0.000000 NA 1.000000 22.100000 IGS_118 igs psaC|ndhE psaC-ndhE 117048 117296 0 249 SSC 0.004016 1 0 290 45 no 1.000000 2 1.000000 NA 1.000000 43.200000 ndhE gene ndhE ndhE 117297 117602 -1 306 SSC 0.013072 4 0 7 31 no 1.000000 2 1.000000 NA 1.000000 45.700000 IGS_119 igs ndhE|ndhG ndhE-ndhG 117603 117859 0 257 SSC 0.023438 6 1 28 51 no 1.000000 2 1.000000 NA 0.996109 53.400000 ndhG gene ndhG ndhG 117860 118390 -1 531 SSC 0.026365 14 0 4 57 no 1.000000 2 1.000000 NA 1.000000 57.800000 IGS_120 igs ndhG|ndhI ndhG-ndhI 118391 118725 0 335 SSC 0.012903 4 25 9 2 yes 1.000000 2 1.000000 NA 0.925373 49.800000 ndhI gene ndhI ndhI 118726 119241 -1 516 SSC 0.056420 29 2 34 11 yes 1.000000 2 1.000000 NA 0.996124 72.700000 IGS_121 igs ndhI|ndhA ndhI-ndhA 119242 119270 0 29 SSC 0.034483 1 0 137 17 no 1.000000 2 1.000000 NA 1.000000 58.600000 ndhA gene ndhA ndhA 119271 121437 -1 2167 SSC 0.018579 40 14 17 67 no 1.000000 2 1.000000 NA 0.993539 54.900000 IGS_122 igs ndhA|ndhH ndhA-ndhH 121438 121438 0 1 SSC 0.000000 0 0 21 66 no 0.000000 1 0.000000 NA 1.000000 20.300000 ndhH gene ndhH ndhH 121439 122614 -1 1176 SSC 0.025510 30 0 22 8 yes 1.000000 2 1.000000 NA 1.000000 59.000000 IGS_123 igs ndhH|rps15 ndhH-rps15 122615 122716 0 102 SSC 0.049020 5 0 28 120 no 1.000000 2 1.000000 NA 1.000000 67.800000 rps15 gene rps15 rps15 122717 122983 -1 267 SSC 0.014981 4 0 17 103 no 1.000000 2 1.000000 NA 1.000000 47.400000 IGS_124 igs rps15|ycf1 rps15-ycf1 122984 123310 0 327 SSC 0.024615 8 2 12 51 no 1.000000 2 1.000000 NA 0.993884 53.700000 ycf1 gene ycf1 ycf1 123311 128647 -1 5337 SSC 0.020236 108 0 27 300 yes 1.000000 2 1.000000 NA 1.000000 51.200000 IGS_125 igs ycf1|trnN ycf1-trnN 128648 128980 0 333 IRa 0.000000 0 0 300 91 no 0.000000 1 0.000000 NA 1.000000 26.300000 trnN tRNA trnN trnN 128981 129052 1 72 IRa 0.000000 0 0 300 19 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_126 igs trnN|trnR trnN-trnR 129053 129698 0 646 IRa 0.009390 6 7 300 300 no 1.000000 2 1.000000 NA 0.989164 65.200000 trnR tRNA trnR trnR 129699 129772 -1 74 IRa 0.000000 0 0 155 300 no 0.000000 1 0.000000 NA 1.000000 30.400000 IGS_127 igs trnR|rrn5S trnR-rrn5S 129773 130020 0 248 IRa 0.000000 0 0 229 100 no 0.000000 1 0.000000 NA 1.000000 26.200000 rrn5S rRNA rrn5S rrn5S 130021 130141 -1 121 IRa 0.008264 1 0 300 211 no 1.000000 2 1.000000 NA 1.000000 57.300000 IGS_128 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 130142 130388 0 247 IRa 0.004115 1 4 20 300 no 1.000000 2 1.000000 NA 0.983806 42.900000 rrn4.5S rRNA rrn4.5S rrn4.5S 130389 130491 -1 103 IRa 0.000000 0 0 35 300 no 0.000000 1 0.000000 NA 1.000000 21.400000 IGS_129 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 130492 130589 0 98 IRa 0.000000 0 0 138 300 no 0.000000 1 0.000000 NA 1.000000 29.100000 rrn23S rRNA rrn23S rrn23S 130590 133399 -1 2810 IRa 0.000712 2 0 236 300 no 1.000000 2 1.000000 NA 1.000000 56.400000 IGS_130 igs rrn23S|trnA rrn23S-trnA 133400 133551 0 152 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA_part2 tRNA trnA trnA 133552 133586 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA_part1 tRNA trnA trnA 134391 134428 -1 38 IRa 0.000000 0 0 198 231 no 0.000000 1 0.000000 NA 1.000000 33.600000 IGS_133 igs trnA|trnI trnA-trnI 134429 134492 0 64 IRa 0.000000 0 0 236 167 no 0.000000 1 0.000000 NA 1.000000 31.300000 trnI_part2 tRNA trnI trnI 134493 134527 -1 35 IRa 0.000000 0 0 300 132 no 0.000000 1 0.000000 NA 1.000000 28.600000 trnI_part1 tRNA trnI trnI 135477 135513 -1 37 IRa 0.000000 0 0 118 300 no 0.000000 1 0.000000 NA 1.000000 27.600000 IGS_136 igs trnI|rrn16S trnI-rrn16S 135514 135736 0 223 IRa 0.000000 0 0 155 300 no 0.000000 1 0.000000 NA 1.000000 30.400000 rrn16S rRNA rrn16S rrn16S 135737 137227 -1 1491 IRa 0.000000 0 0 300 44 no 0.000000 1 0.000000 NA 1.000000 28.300000 IGS_137 igs rrn16S|trnV rrn16S-trnV 137228 137458 0 231 IRa 0.004329 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 55.000000 IGS_138 igs trnV|rps12 trnV-rps12 137531 139449 0 1919 IRa 0.003657 7 5 258 300 no 1.000000 2 1.000000 NA 0.997394 60.200000 rps12_part2 gene rps12 rps12 139450 140244 1 795 IRa 0.001258 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 59.500000 IGS_139 igs rps12|rps7 rps12-rps7 140245 140297 0 53 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rps7 gene rps7 rps7 140298 140765 1 468 IRa 0.000000 0 0 300 257 no 0.000000 1 0.000000 NA 1.000000 37.300000 IGS_140 igs rps7|ndhB rps7-ndhB 140766 141444 0 679 IRa 0.014728 10 0 300 150 no 1.000000 2 1.000000 NA 1.000000 63.500000 ndhB gene ndhB ndhB 141445 143299 1 1855 IRa 0.001078 2 0 162 300 no 1.000000 2 1.000000 NA 1.000000 55.800000 IGS_141 igs ndhB|trnL ndhB-trnL 143300 143881 0 582 IRa 0.005155 3 0 300 300 no 1.000000 2 1.000000 NA 1.000000 61.300000 IGS_142 igs trnL|orf77 trnL-orf77 143963 144519 0 557 IRa 0.000000 0 12 136 300 no 1.000000 2 1.000000 NA 0.978456 55.100000 orf77 gene orf77 orf77 144520 144705 -1 186 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_143 igs orf77|ycf2 orf77-ycf2 144706 144889 0 184 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 ycf2 gene ycf2 ycf2 144890 151756 -1 6867 IRa 0.002482 17 18 300 27 no 1.000000 2 1.000000 NA 0.997379 41.200000 IGS_144 igs ycf2|trnI ycf2-trnI 151757 151844 0 88 IRa 0.011364 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 59.000000 IGS_145 igs trnI|rpl23 trnI-rpl23 151919 152086 0 168 IRa 0.000000 0 0 134 185 no 0.000000 1 0.000000 NA 1.000000 28.800000 rpl23 gene rpl23 rpl23 152087 152368 1 282 IRa 0.003546 1 0 300 2 no 1.000000 2 1.000000 NA 1.000000 39.700000 IGS_146 igs rpl23|rpl2 rpl23-rpl2 152369 152386 0 18 IRa 0.055556 1 0 96 58 yes 1.000000 2 1.000000 NA 1.000000 71.300000 rpl2 gene rpl2 rpl2 152387 153893 1 1507 IRa 0.001991 3 0 15 29 no 1.000000 2 1.000000 NA 1.000000 46.000000 IGS_147 igs rpl2|trnH rpl2-trnH 153894 4 0 170 IRa 0.011834 2 1 201 83 no 1.000000 2 1.000000 NA 0.994118 51.100000