feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 2 75 -1 74 LSC 0.000000 0 0 7 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_001 igs trnH|psbA trnH-psbA 76 349 0 274 LSC 0.074481 30 6 81 252 yes 1.000000 3 1.000000 0.075461 0.996350 81.000000 psbA gene psbA psbA 350 1411 -1 1062 LSC 0.003139 5 0 22 42 no 1.000000 3 1.000000 0.003139 1.000000 47.400000 IGS_002 igs psbA|trnK psbA-trnK 1412 1679 0 268 LSC 0.034826 14 0 56 148 no 1.000000 3 1.000000 0.034826 1.000000 63.900000 trnK_part2 tRNA trnK trnK 1680 1715 -1 36 LSC 0.000000 0 0 2 112 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 matK gene matK matK 2019 3533 -1 1515 LSC 0.015402 35 0 2 14 no 1.000000 3 1.000000 0.015402 1.000000 53.700000 IGS_005 igs matK|trnK matK-trnK 3534 4271 0 738 LSC 0.011759 13 8 5 38 no 1.000000 3 1.000000 0.011846 0.998645 52.800000 trnK_part1 tRNA trnK trnK 4272 4308 -1 37 LSC 0.000000 0 0 38 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_006 igs trnK|rps16 trnK-rps16 4309 4984 0 676 LSC 0.042100 40 61 75 65 yes 1.000000 3 1.000000 0.040326 0.995562 80.200000 rps16 gene rps16 rps16 4985 6111 -1 1127 LSC 0.023487 38 29 13 28 no 1.000000 3 1.000000 0.023009 0.982254 62.100000 IGS_007 igs rps16|trnQ rps16-trnQ 6112 6542 0 431 LSC 0.044444 27 11 63 137 yes 1.000000 3 1.000000 0.044444 0.974478 75.100000 trnQ tRNA trnQ trnQ 6543 6614 -1 72 LSC 0.000000 0 0 8 65 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_008 igs trnQ|psbK trnQ-psbK 6615 6944 0 330 LSC 0.018182 9 0 80 45 no 1.000000 3 1.000000 0.018182 1.000000 53.100000 psbK gene psbK psbK 6945 7130 1 186 LSC 0.007168 2 0 9 21 no 1.000000 3 1.000000 0.007168 1.000000 42.700000 IGS_009 igs psbK|psbI psbK-psbI 7131 7516 0 386 LSC 0.022511 13 1 39 120 no 1.000000 3 1.000000 0.022511 0.997409 56.800000 psbI gene psbI psbI 7517 7627 1 111 LSC 0.000000 0 0 86 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_010 igs psbI|trnS psbI-trnS 7628 7716 0 89 LSC 0.044944 6 1 197 94 yes 1.000000 3 1.000000 0.045284 1.000000 74.500000 trnS tRNA trnS trnS 7717 7805 -1 89 LSC 0.000000 0 0 44 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_011 igs trnS|atpA trnS-atpA 7806 9779 0 1974 LSC 0.030319 85 72 133 3 yes 1.000000 3 1.000000 0.030082 0.969098 65.500000 atpA gene atpA atpA 9780 11303 -1 1524 LSC 0.006999 16 0 5 53 no 1.000000 3 1.000000 0.006999 1.000000 48.500000 IGS_012 igs atpA|atpF atpA-atpF 11304 11369 0 66 LSC 0.010101 1 1 158 233 no 1.000000 3 1.000000 0.010179 1.000000 57.500000 atpF gene atpF atpF 11370 12672 -1 1303 LSC 0.014337 28 41 12 40 no 1.000000 3 1.000000 0.014613 0.999233 57.400000 IGS_013 igs atpF|atpH atpF-atpH 12673 13134 0 462 LSC 0.023138 16 3 4 75 no 1.000000 3 1.000000 0.023214 0.997835 56.600000 atpH gene atpH atpH 13135 13380 -1 246 LSC 0.002710 1 0 29 63 no 0.333333 2 0.500000 0.002710 1.000000 28.900000 IGS_014 igs atpH|atpI atpH-atpI 13381 13880 0 500 LSC 0.032720 24 15 170 75 yes 1.000000 3 1.000000 0.032899 0.978000 70.900000 atpI gene atpI atpI 13881 14630 -1 750 LSC 0.002667 3 0 3 47 no 1.000000 3 1.000000 0.002667 1.000000 45.700000 IGS_015 igs atpI|rps2 atpI-rps2 14631 14871 0 241 LSC 0.022130 8 0 95 4 no 1.000000 3 1.000000 0.022130 1.000000 51.900000 rps2 gene rps2 rps2 14872 15582 -1 711 LSC 0.009376 10 0 22 3 no 1.000000 3 1.000000 0.009376 1.000000 50.000000 IGS_016 igs rps2|rpoC2 rps2-rpoC2 15583 15799 0 217 LSC 0.027650 9 0 20 99 no 1.000000 3 1.000000 0.027650 1.000000 56.600000 rpoC2 gene rpoC2 rpoC2 15800 19933 -1 4134 LSC 0.011450 71 0 34 55 no 1.000000 3 1.000000 0.011450 1.000000 48.700000 IGS_017 igs rpoC2|rpoC1 rpoC2-rpoC1 19934 20100 0 167 LSC 0.013972 3 0 35 114 no 1.000000 3 1.000000 0.013972 1.000000 48.700000 rpoC1 gene rpoC1 rpoC1 20101 22937 -1 2837 LSC 0.010226 43 1 44 109 no 1.000000 3 1.000000 0.010226 0.999648 50.800000 IGS_018 igs rpoC1|rpoB rpoC1-rpoB 22938 22963 0 26 LSC 0.000000 0 0 300 83 no 0.000000 1 0.000000 0.000000 1.000000 25.000000 rpoB gene rpoB rpoB 22964 26182 -1 3219 LSC 0.007663 37 0 300 1 no 1.000000 3 1.000000 0.007663 1.000000 45.200000 IGS_019 igs rpoB|trnC rpoB-trnC 26183 27290 0 1108 LSC 0.024862 39 24 6 165 no 1.000000 3 1.000000 0.024277 0.980144 61.800000 trnC tRNA trnC trnC 27291 27362 1 72 LSC 0.000000 0 0 2 93 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_020 igs trnC|ycf6 trnC-ycf6 27363 27995 0 633 LSC 0.024455 23 15 74 17 no 1.000000 3 1.000000 0.024711 0.990521 63.100000 ycf6 gene ycf6 ycf6 27996 28085 1 90 LSC 0.007407 1 0 2 25 no 0.333333 2 0.500000 0.007407 1.000000 29.900000 IGS_021 igs ycf6|psbM ycf6-psbM 28086 28620 0 535 LSC 0.016199 13 8 72 194 no 1.000000 3 1.000000 0.016361 1.000000 59.800000 psbM gene psbM psbM 28621 28725 -1 105 LSC 0.000000 0 0 8 89 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_022 igs psbM|trnD psbM-trnD 28726 29728 0 1003 LSC 0.029510 44 13 113 84 no 1.000000 3 1.000000 0.029593 0.991027 70.100000 trnD tRNA trnD trnD 29729 29805 -1 77 LSC 0.000000 0 0 13 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_023 igs trnD|trnY trnD-trnY 29806 30245 0 440 LSC 0.039664 26 3 90 34 no 1.000000 3 1.000000 0.039664 0.993182 68.800000 trnY tRNA trnY trnY 30246 30331 -1 86 LSC 0.007752 1 0 55 34 no 0.333333 2 0.500000 0.007752 1.000000 32.500000 IGS_024 igs trnY|trnE trnY-trnE 30332 30388 0 57 LSC 0.011696 1 0 51 123 no 0.333333 2 0.500000 0.011696 1.000000 36.300000 trnE tRNA trnE trnE 30389 30463 -1 75 LSC 0.000000 0 0 22 48 no 0.000000 1 0.000000 0.000000 1.000000 20.400000 IGS_025 igs trnE|trnT trnE-trnT 30464 31278 0 815 LSC 0.026683 32 14 97 202 no 1.000000 3 1.000000 0.026908 0.996319 69.800000 trnT tRNA trnT trnT 31279 31352 1 74 LSC 0.000000 0 0 1 128 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_026 igs trnT|psbD trnT-psbD 31353 32250 0 898 LSC 0.020461 27 4 75 300 no 1.000000 3 1.000000 0.019745 0.997773 62.800000 psbD gene psbD psbD 32251 33312 1 1062 LSC 0.003139 5 0 42 27 no 1.000000 3 1.000000 0.003139 1.000000 47.800000 psbC gene psbC psbC 33260 34681 1 1422 LSC 0.005626 12 1 97 23 no 1.000000 3 1.000000 0.005628 1.000000 49.100000 IGS_028 igs psbC|trnS psbC-trnS 34682 34861 0 180 LSC 0.029630 8 0 90 36 no 1.000000 3 1.000000 0.029630 1.000000 59.100000 trnS tRNA trnS trnS 34862 34953 -1 92 LSC 0.007246 1 0 13 62 no 0.333333 2 0.500000 0.007246 1.000000 30.600000 IGS_029 igs trnS|ycf9 trnS-ycf9 34954 35299 0 346 LSC 0.009634 5 0 55 269 no 1.000000 3 1.000000 0.009634 1.000000 48.700000 ycf9 gene ycf9 ycf9 35300 35488 1 189 LSC 0.000000 0 0 54 80 no 0.000000 1 0.000000 0.000000 1.000000 22.800000 IGS_030 igs ycf9|trnG ycf9-trnG 35489 35970 0 482 LSC 0.027663 20 9 243 104 no 1.000000 3 1.000000 0.027970 1.000000 68.900000 trnG tRNA trnG trnG 35971 36042 1 72 LSC 0.000000 0 0 8 32 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_031 igs trnG|trnM trnG-trnM 36043 36182 0 140 LSC 0.019048 4 0 80 189 no 1.000000 3 1.000000 0.019048 1.000000 55.600000 trnM tRNA trnM trnM 36183 36257 -1 75 LSC 0.000000 0 0 39 114 no 0.000000 1 0.000000 0.000000 1.000000 21.700000 IGS_032 igs trnM|rps14 trnM-rps14 36258 36417 0 160 LSC 0.008333 2 1 114 154 no 1.000000 3 1.000000 0.008373 1.000000 52.100000 rps14 gene rps14 rps14 36418 36720 -1 303 LSC 0.008801 4 0 10 30 no 1.000000 3 1.000000 0.008801 1.000000 43.900000 IGS_033 igs rps14|psaB rps14-psaB 36721 36854 0 134 LSC 0.014925 3 1 79 189 no 1.000000 3 1.000000 0.014981 1.000000 53.800000 psaB gene psaB psaB 36855 39059 -1 2205 LSC 0.003628 12 0 39 300 no 1.000000 3 1.000000 0.003628 1.000000 47.500000 IGS_034 igs psaB|psaA psaB-psaA 39060 39084 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 39085 41337 -1 2253 LSC 0.004439 15 0 300 59 no 1.000000 3 1.000000 0.004439 1.000000 49.400000 IGS_035 igs psaA|ycf3 psaA-ycf3 41338 42052 0 715 LSC 0.016854 18 17 173 57 no 1.000000 3 1.000000 0.017069 0.995804 61.400000 ycf3 gene ycf3 ycf3 42053 44065 -1 2013 LSC 0.008667 26 13 3 28 no 1.000000 3 1.000000 0.008667 0.993542 49.000000 IGS_036 igs ycf3|trnS ycf3-trnS 44066 44300 0 235 LSC 0.022695 8 4 11 102 no 1.000000 3 1.000000 0.022990 1.000000 54.700000 trnS tRNA trnS trnS 44301 44387 1 87 LSC 0.000000 0 0 76 15 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_037 igs trnS|rps4 trnS-rps4 44388 44703 0 316 LSC 0.031646 15 0 163 183 yes 1.000000 3 1.000000 0.031646 1.000000 70.200000 rps4 gene rps4 rps4 44704 45309 -1 606 LSC 0.008801 8 0 4 99 no 1.000000 3 1.000000 0.008801 1.000000 49.700000 IGS_038 igs rps4|trnT rps4-trnT 45310 45697 0 388 LSC 0.020725 12 3 41 5 no 1.000000 3 1.000000 0.020766 0.994845 53.700000 trnT tRNA trnT trnT 45698 45772 -1 75 LSC 0.008889 1 0 12 14 no 0.333333 2 0.500000 0.008889 1.000000 31.600000 IGS_039 igs trnT|trnL trnT-trnL 45773 46558 0 786 LSC 0.038780 44 29 69 153 yes 1.000000 3 1.000000 0.038171 0.973282 77.000000 trnL_part1 tRNA trnL trnL 46559 46593 1 35 LSC 0.000000 0 0 20 118 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 trnL_part2 tRNA trnL trnL 47031 47080 1 50 LSC 0.000000 0 0 75 26 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_042 igs trnL|trnF trnL-trnF 47081 47902 0 822 LSC 0.094875 86 385 125 76 yes 1.000000 3 1.000000 0.069636 0.957421 84.800000 trnF tRNA trnF trnF 47903 47975 1 73 LSC 0.000000 0 1 0 3 no 0.333333 2 0.500000 0.000000 1.000000 26.600000 IGS_043 igs trnF|ndhJ trnF-ndhJ 47976 48558 0 583 LSC 0.042676 37 6 73 35 yes 1.000000 3 1.000000 0.042728 0.991424 74.100000 ndhJ gene ndhJ ndhJ 48559 49035 -1 477 LSC 0.009783 7 0 11 45 no 1.000000 3 1.000000 0.009783 1.000000 48.200000 IGS_044 igs ndhJ|psbG ndhJ-psbG 49036 49137 0 102 LSC 0.052288 8 0 137 29 yes 1.000000 3 1.000000 0.052288 1.000000 72.000000 psbG gene psbG psbG 49138 49815 -1 678 LSC 0.007375 7 9 11 22 no 1.000000 3 1.000000 0.006431 1.000000 50.700000 IGS_045 igs psbG|ndhC psbG-ndhC 49816 49879 0 64 LSC 0.041667 4 0 31 162 no 1.000000 3 1.000000 0.041667 1.000000 66.400000 ndhC gene ndhC ndhC 49880 50242 -1 363 LSC 0.005510 3 0 35 14 no 1.000000 3 1.000000 0.005510 1.000000 43.400000 IGS_046 igs ndhC|trnV ndhC-trnV 50243 51108 0 866 LSC 0.038401 44 271 77 232 yes 1.000000 3 1.000000 0.038338 0.972286 75.500000 trnV_part2 tRNA trnV trnV 51109 51143 -1 35 LSC 0.000000 0 0 5 197 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 trnV_part1 tRNA trnV trnV 51750 51788 -1 39 LSC 0.000000 0 0 29 55 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_049 igs trnV|trnM trnV-trnM 51789 51972 0 184 LSC 0.010870 3 0 68 148 no 1.000000 3 1.000000 0.010870 1.000000 49.500000 trnM tRNA trnM trnM 51973 52045 1 73 LSC 0.000000 0 0 22 75 no 0.000000 1 0.000000 0.000000 1.000000 20.400000 IGS_050 igs trnM|atpE trnM-atpE 52046 52131 0 86 LSC 0.015504 2 1 95 177 no 1.000000 3 1.000000 0.015595 1.000000 55.800000 atpE gene atpE atpE 52132 52530 -1 399 LSC 0.010025 6 0 2 167 no 1.000000 3 1.000000 0.010025 1.000000 46.100000 atpB gene atpB atpB 52527 54023 -1 1497 LSC 0.005789 13 0 61 17 no 1.000000 3 1.000000 0.005789 1.000000 48.700000 IGS_052 igs atpB|rbcL atpB-rbcL 54024 54816 0 793 LSC 0.022756 27 59 65 131 no 1.000000 3 1.000000 0.024032 0.997478 68.500000 rbcL gene rbcL rbcL 54817 56256 1 1440 LSC 0.005556 12 0 138 68 no 1.000000 3 1.000000 0.005556 1.000000 52.400000 IGS_053 igs rbcL|accD rbcL-accD 56257 56934 0 678 LSC 0.025111 22 23 43 17 no 1.000000 3 1.000000 0.019617 0.998525 64.200000 accD gene accD accD 56935 58389 1 1455 LSC 0.017869 39 6 179 2 no 1.000000 3 1.000000 0.017922 1.000000 55.800000 IGS_054 igs accD|psaI accD-psaI 58390 59010 0 621 LSC 0.030156 27 3 1 115 no 1.000000 3 1.000000 0.030188 0.996779 63.300000 psaI gene psaI psaI 59011 59124 1 114 LSC 0.000000 0 0 54 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_055 igs psaI|ycf4 psaI-ycf4 59125 59533 0 409 LSC 0.029630 18 10 168 84 no 1.000000 3 1.000000 0.029914 0.990220 67.500000 ycf4 gene ycf4 ycf4 59534 60088 1 555 LSC 0.008408 7 0 45 2 no 1.000000 3 1.000000 0.008408 1.000000 48.300000 IGS_056 igs ycf4|ycf10/cemA ycf4-ycf10/cemA 60089 60519 0 431 LSC 0.033646 21 14 78 3 no 1.000000 3 1.000000 0.034170 0.988399 65.100000 ycf10/cemA gene ycf10/cemA ycf10/cemA 60520 61209 1 690 LSC 0.005797 6 0 84 4 no 1.000000 3 1.000000 0.005797 1.000000 47.700000 IGS_057 igs ycf10/cemA|petA ycf10/cemA-petA 61210 61448 0 239 LSC 0.024133 8 18 63 300 no 1.000000 3 1.000000 0.024133 0.924686 61.000000 petA gene petA petA 61449 62411 1 963 LSC 0.007615 11 0 47 35 no 1.000000 3 1.000000 0.007615 1.000000 51.200000 IGS_058 igs petA|psbJ petA-psbJ 62412 63356 0 945 LSC 0.040598 55 41 99 64 yes 1.000000 3 1.000000 0.040815 0.990476 78.800000 psbJ gene psbJ psbJ 63357 63479 -1 123 LSC 0.005420 1 0 21 3 no 0.333333 2 0.500000 0.005420 1.000000 28.700000 IGS_059 igs psbJ|psbL psbJ-psbL 63480 63623 0 144 LSC 0.025463 5 1 58 300 no 1.000000 3 1.000000 0.020914 1.000000 58.400000 psbL gene psbL psbL 63624 63740 -1 117 LSC 0.000000 0 0 4 261 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_060 igs psbL|psbF psbL-psbF 63741 63761 0 21 LSC 0.000000 0 0 121 240 no 0.000000 1 0.000000 0.000000 1.000000 27.800000 psbF gene psbF psbF 63762 63881 -1 120 LSC 0.000000 0 0 142 120 no 0.000000 1 0.000000 0.000000 1.000000 27.700000 IGS_061 igs psbF|psbE psbF-psbE 63882 63890 0 9 LSC 0.000000 0 0 262 111 no 0.000000 1 0.000000 NA 1.000000 27.100000 psbE gene psbE psbE 63891 64142 -1 252 LSC 0.002646 1 0 271 20 no 0.333333 2 0.500000 0.002646 1.000000 28.200000 IGS_062 igs psbE|ORF31 psbE-ORF31 64143 65488 0 1346 LSC 0.037369 74 26 140 47 yes 1.000000 3 1.000000 0.037697 0.994056 73.000000 ORF31 gene ORF31 ORF31 65489 65584 1 96 LSC 0.013889 2 0 9 12 no 1.000000 3 1.000000 0.013889 1.000000 47.000000 IGS_063 igs ORF31|petG ORF31-petG 65585 65771 0 187 LSC 0.023173 6 0 33 86 no 1.000000 3 1.000000 0.023173 1.000000 54.400000 petG gene petG petG 65772 65885 1 114 LSC 0.005848 1 0 14 51 no 0.333333 2 0.500000 0.005848 1.000000 29.800000 IGS_064 igs petG|trnW petG-trnW 65886 66014 0 129 LSC 0.031008 6 0 27 80 no 1.000000 3 1.000000 0.031008 1.000000 59.300000 trnW tRNA trnW trnW 66015 66088 -1 74 LSC 0.000000 0 0 27 6 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_065 igs trnW|trnP trnW-trnP 66089 66277 0 189 LSC 0.021505 6 3 101 104 no 1.000000 3 1.000000 0.021505 0.984127 60.200000 trnP tRNA trnP trnP 66278 66352 -1 75 LSC 0.000000 0 0 40 29 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_066 igs trnP|psaJ trnP-psaJ 66353 66703 0 351 LSC 0.032289 17 0 115 127 no 1.000000 3 1.000000 0.032289 1.000000 67.800000 psaJ gene psaJ psaJ 66704 66838 1 135 LSC 0.004938 1 0 19 6 no 0.333333 2 0.500000 0.004938 1.000000 28.600000 IGS_067 igs psaJ|rpl33 psaJ-rpl33 66839 67269 0 431 LSC 0.039535 25 5 7 83 no 1.000000 3 1.000000 0.038166 0.997680 67.100000 rpl33 gene rpl33 rpl33 67270 67470 1 201 LSC 0.006633 2 0 3 41 no 1.000000 3 1.000000 0.006633 1.000000 42.000000 IGS_068 igs rpl33|rps18 rpl33-rps18 67471 67678 0 208 LSC 0.019231 6 0 72 161 no 1.000000 3 1.000000 0.019231 1.000000 55.200000 rps18 gene rps18 rps18 67679 67984 1 306 LSC 0.002179 1 0 22 10 no 0.333333 2 0.500000 0.002179 1.000000 27.300000 IGS_069 igs rps18|rpl20 rps18-rpl20 67985 68281 0 297 LSC 0.025901 11 7 144 3 no 1.000000 3 1.000000 0.023928 0.996633 56.600000 rpl20 gene rpl20 rpl20 68282 68635 -1 354 LSC 0.015066 8 0 8 38 no 1.000000 3 1.000000 0.015066 1.000000 48.800000 IGS_070 igs rpl20|rps12 rpl20-rps12 68636 69395 0 760 LSC 0.018445 21 1 143 41 no 1.000000 3 1.000000 0.018445 0.998684 58.700000 rps12_part1 gene rps12 rps12 69396 69509 -1 114 LSC 0.011696 2 0 29 86 no 1.000000 3 1.000000 0.011696 1.000000 47.100000 IGS_071 igs rps12|clpP rps12-clpP 69510 69690 0 181 LSC 0.034991 9 0 56 131 no 1.000000 3 1.000000 0.034991 1.000000 63.700000 clpP gene clpP clpP 69691 71744 -1 2054 LSC 0.020630 63 16 39 120 no 1.000000 3 1.000000 0.020398 0.999026 59.500000 IGS_072 igs clpP|psbB clpP-psbB 71745 72231 0 487 LSC 0.006859 5 1 95 95 no 1.000000 3 1.000000 0.006859 0.997947 53.100000 psbB gene psbB psbB 72232 73758 1 1527 LSC 0.006549 15 0 95 106 no 1.000000 3 1.000000 0.006549 1.000000 55.000000 IGS_073 igs psbB|psbT psbB-psbT 73759 73945 0 187 LSC 0.007286 2 5 30 82 no 1.000000 3 1.000000 0.007316 0.978610 46.900000 psbT gene psbT psbT 73946 74047 1 102 LSC 0.006536 1 0 66 9 no 0.333333 2 0.500000 0.006536 1.000000 29.800000 IGS_074 igs psbT|psbN psbT-psbN 74048 74112 0 65 LSC 0.030769 3 0 19 258 no 1.000000 3 1.000000 0.030769 1.000000 58.500000 psbN gene psbN psbN 74113 74244 -1 132 LSC 0.000000 0 0 11 126 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_075 igs psbN|psbH psbN-psbH 74245 74348 0 104 LSC 0.000000 0 0 143 22 no 0.000000 1 0.000000 0.000000 1.000000 20.400000 psbH gene psbH psbH 74349 74570 1 222 LSC 0.009009 3 0 247 9 no 1.000000 3 1.000000 0.009009 1.000000 43.900000 IGS_076 igs psbH|petB psbH-petB 74571 74697 0 127 LSC 0.021164 4 1 77 35 no 1.000000 3 1.000000 0.021164 0.992126 54.300000 petB gene petB petB 74698 76133 1 1436 LSC 0.009285 20 0 34 87 no 1.000000 3 1.000000 0.009285 1.000000 52.200000 IGS_077 igs petB|petD petB-petD 76134 76320 0 187 LSC 0.007130 2 7 108 48 no 1.000000 3 1.000000 0.007269 1.000000 49.900000 petD gene petD petD 76321 77519 1 1199 LSC 0.016138 29 2 41 1 no 1.000000 3 1.000000 0.016147 0.999166 54.300000 IGS_078 igs petD|rpoA petD-rpoA 77520 77719 0 200 LSC 0.033333 10 0 70 45 no 1.000000 3 1.000000 0.033333 1.000000 62.100000 rpoA gene rpoA rpoA 77720 78703 -1 984 LSC 0.011518 17 0 10 13 no 1.000000 3 1.000000 0.011518 1.000000 51.800000 IGS_079 igs rpoA|rps11 rpoA-rps11 78704 78772 0 69 LSC 0.019324 2 0 70 300 no 1.000000 3 1.000000 0.019324 1.000000 55.100000 rps11 gene rps11 rps11 78773 79189 -1 417 LSC 0.004796 3 0 18 52 no 1.000000 3 1.000000 0.004796 1.000000 44.300000 IGS_080 igs rps11|rpl36 rps11-rpl36 79190 79304 0 115 LSC 0.023188 4 1 44 63 no 1.000000 3 1.000000 0.023316 1.000000 56.600000 rpl36 gene rpl36 rpl36 79305 79418 -1 114 LSC 0.005848 1 0 32 90 no 0.333333 2 0.500000 0.005848 1.000000 31.100000 IGS_081 igs rpl36|rps8 rpl36-rps8 79419 79829 0 411 LSC 0.034653 21 8 50 129 no 1.000000 3 1.000000 0.034705 0.982968 67.400000 rps8 gene rps8 rps8 79830 80234 -1 405 LSC 0.003292 2 0 11 58 no 0.333333 2 0.500000 0.003292 1.000000 30.100000 IGS_082 igs rps8|rpl14 rps8-rpl14 80235 80451 0 217 LSC 0.015361 5 1 168 9 no 1.000000 3 1.000000 0.015418 1.000000 48.500000 rpl14 gene rpl14 rpl14 80452 80820 -1 369 LSC 0.005420 3 0 12 65 no 1.000000 3 1.000000 0.005420 1.000000 43.300000 IGS_083 igs rpl14|rpl16 rpl14-rpl16 80821 80943 0 123 LSC 0.010840 2 0 251 87 no 1.000000 3 1.000000 0.010840 1.000000 50.900000 rpl16 gene rpl16 rpl16 80944 82453 -1 1510 LSC 0.026711 59 6 6 81 yes 1.000000 3 1.000000 0.026337 1.000000 61.500000 IGS_084 igs rpl16|rps3 rpl16-rps3 82454 82627 0 174 LSC 0.040230 9 7 63 30 no 1.000000 3 1.000000 0.029298 1.000000 68.900000 rps3 gene rps3 rps3 82628 83284 -1 657 LSC 0.008118 8 0 8 40 no 1.000000 3 1.000000 0.008118 1.000000 49.500000 rpl22 gene rpl22 rpl22 83269 83751 -1 483 LSC 0.020704 15 0 33 13 no 1.000000 3 1.000000 0.020704 1.000000 55.500000 IGS_086 igs rpl22|rps19 rpl22-rps19 83752 83806 0 55 LSC 0.012121 1 0 8 56 no 0.333333 2 0.500000 0.012121 1.000000 33.300000 rps19 gene rps19 rps19 83807 84085 -1 279 LSC 0.009558 4 0 41 4 no 1.000000 3 1.000000 0.009558 1.000000 43.900000 IGS_087 igs rps19|rpl2 rps19-rpl2 84086 84140 0 55 IRb 0.049383 4 1 107 36 yes 1.000000 3 1.000000 0.049383 0.981818 73.200000 rpl2 gene rpl2 rpl2 84141 85647 -1 1507 IRb 0.001770 4 0 10 300 no 0.333333 2 0.500000 0.001770 1.000000 33.100000 IGS_088 igs rpl2|rpl23 rpl2-rpl23 85648 85665 0 18 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 85666 85947 -1 282 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_089 igs rpl23|trnM rpl23-trnM 85948 86114 0 167 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnM tRNA trnM trnM 86115 86189 -1 75 IRb 0.000000 0 0 300 296 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_090 igs trnM|ycf2 trnM-ycf2 86190 86277 0 88 IRb 0.000000 0 0 300 208 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 86278 93150 1 6873 IRb 0.002134 22 6 300 98 no 1.000000 3 1.000000 0.002135 1.000000 46.300000 IGS_091 igs ycf2|trnL ycf2-trnL 93151 94061 0 911 IRb 0.005854 8 0 219 194 no 1.000000 3 1.000000 0.005854 1.000000 62.000000 IGS_092 igs trnL|ndhB trnL-ndhB 94145 94714 0 570 IRb 0.004678 4 0 151 48 no 1.000000 3 1.000000 0.004678 1.000000 49.700000 ndhB gene ndhB ndhB 94715 96932 -1 2218 IRb 0.001803 6 0 79 31 no 1.000000 3 1.000000 0.001803 1.000000 45.700000 IGS_093 igs ndhB|rps7 ndhB-rps7 96933 97245 0 313 IRb 0.004260 2 0 35 300 no 0.333333 2 0.500000 0.004260 1.000000 30.600000 rps7 gene rps7 rps7 97246 97713 -1 468 IRb 0.000000 0 0 149 153 no 0.000000 1 0.000000 0.000000 1.000000 33.400000 IGS_094 igs rps7|trnV rps7-trnV 97714 100476 0 2763 IRb 0.004584 19 22 300 300 no 1.000000 3 1.000000 0.004610 1.000000 60.000000 IGS_095 igs trnV|rrn16S trnV-rrn16S 100549 100779 0 231 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 100780 102270 1 1491 IRb 0.000447 1 0 300 49 no 0.333333 2 0.500000 0.000447 1.000000 35.200000 IGS_096 igs rrn16S|trnI rrn16S-trnI 102271 102568 0 298 IRb 0.004474 2 0 300 283 no 1.000000 3 1.000000 0.004474 1.000000 55.400000 trnI_part1 tRNA trnI trnI 102569 102600 1 32 IRb 0.000000 0 0 211 251 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 orf133 gene orf133 orf133 102950 103285 1 336 IRb 0.000000 0 0 97 86 no 0.000000 1 0.000000 0.000000 1.000000 25.900000 IGS_099 igs orf133|trnI orf133-trnI 103286 103547 0 262 IRb 0.002545 1 0 300 300 no 0.333333 2 0.500000 0.002545 1.000000 41.600000 trnI_part2 tRNA trnI trnI 103548 103587 1 40 IRb 0.000000 0 0 175 300 no 0.000000 1 0.000000 0.000000 1.000000 31.900000 IGS_100 igs trnI|trnA trnI-trnA 103588 103651 0 64 IRb 0.000000 0 0 215 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 103652 103688 1 37 IRb 0.000000 0 0 279 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 104490 104525 1 36 IRb 0.000000 0 0 233 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_103 igs trnA|rrn23S trnA-rrn23S 104526 104677 0 152 IRb 0.000000 0 0 269 285 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 104678 107487 1 2810 IRb 0.000474 2 0 300 285 no 1.000000 3 1.000000 0.000474 1.000000 56.300000 IGS_104 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 107488 107585 0 98 IRb 0.000000 0 0 300 187 no 0.000000 1 0.000000 0.000000 1.000000 32.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 107586 107688 1 103 IRb 0.000000 0 0 300 84 no 0.000000 1 0.000000 0.000000 1.000000 25.100000 IGS_105 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 107689 107935 0 247 IRb 0.002699 1 0 300 112 no 0.333333 2 0.500000 0.002699 1.000000 35.100000 rrn5S rRNA rrn5S rrn5S 107936 108056 1 121 IRb 0.005510 1 0 162 300 no 0.333333 2 0.500000 0.005510 1.000000 40.700000 IGS_106 igs rrn5S|trnR rrn5S-trnR 108057 108298 0 242 IRb 0.000000 0 1 8 94 no 0.333333 2 0.500000 0.000000 0.995868 26.000000 trnR tRNA trnR trnR 108299 108373 1 75 IRb 0.000000 0 0 250 19 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_107 igs trnR|trnN trnR-trnN 108374 109005 0 632 IRb 0.010565 10 3 300 214 no 1.000000 3 1.000000 0.010584 0.998418 66.000000 trnN tRNA trnN trnN 109006 109079 -1 74 IRb 0.000000 0 0 12 140 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_108 igs trnN|ycf1 trnN-ycf1 109080 109398 0 319 IRb 0.004180 2 0 86 300 no 0.333333 2 0.500000 0.004180 1.000000 34.500000 ycf1 gene ycf1 ycf1 109399 110430 1 1032 IRb 0.007106 11 0 89 146 no 1.000000 3 1.000000 0.007106 1.000000 55.000000 ndhF gene ndhF ndhF 110392 112632 -1 2241 SSC 0.016362 54 0 13 82 no 1.000000 3 1.000000 0.016362 1.000000 53.600000 IGS_110 igs ndhF|rpl32 ndhF-rpl32 112633 113489 0 857 SSC 0.045922 58 24 15 56 yes 1.000000 3 1.000000 0.046237 0.982497 76.800000 rpl32 gene rpl32 rpl32 113490 113648 1 159 SSC 0.012579 3 0 1 18 no 1.000000 3 1.000000 0.012579 1.000000 45.600000 IGS_111 igs rpl32|trnL rpl32-trnL 113649 114438 0 790 SSC 0.079003 91 15 42 104 yes 1.000000 3 1.000000 0.076517 0.998734 84.000000 IGS_112 igs trnL|ycf5 trnL-ycf5 114521 114633 0 113 SSC 0.012012 2 3 86 107 no 1.000000 3 1.000000 0.012094 0.982301 54.200000 ycf5 gene ycf5 ycf5 114634 115620 1 987 SSC 0.015535 23 0 51 25 no 1.000000 3 1.000000 0.015535 1.000000 55.500000 IGS_113 igs ycf5|ndhD ycf5-ndhD 115621 115838 0 218 SSC 0.035168 11 0 51 3 no 1.000000 3 1.000000 0.035168 1.000000 59.900000 ndhD gene ndhD ndhD 115839 117341 -1 1503 SSC 0.009758 22 0 12 15 no 1.000000 3 1.000000 0.009758 1.000000 50.900000 IGS_114 igs ndhD|psaC ndhD-psaC 117342 117495 0 154 SSC 0.017316 4 1 92 268 no 1.000000 3 1.000000 0.017373 1.000000 56.200000 psaC gene psaC psaC 117496 117741 -1 246 SSC 0.000000 0 0 7 22 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_115 igs psaC|ndhE psaC-ndhE 117742 117984 0 243 SSC 0.016667 6 3 253 18 no 1.000000 3 1.000000 0.016667 0.987654 50.600000 ndhE gene ndhE ndhE 117985 118290 -1 306 SSC 0.004357 2 0 25 15 no 0.333333 2 0.500000 0.004357 1.000000 29.000000 IGS_116 igs ndhE|ndhG ndhE-ndhG 118291 118538 0 248 SSC 0.034946 13 4 185 59 no 1.000000 3 1.000000 0.035299 1.000000 66.100000 ndhG gene ndhG ndhG 118539 119069 -1 531 SSC 0.020088 16 0 3 25 no 1.000000 3 1.000000 0.020088 1.000000 55.300000 IGS_117 igs ndhG|ndhI ndhG-ndhI 119070 119386 0 317 SSC 0.025316 12 3 57 1 no 1.000000 3 1.000000 0.025417 0.996845 55.100000 ndhI gene ndhI ndhI 119387 119899 -1 513 SSC 0.007147 5 0 4 52 no 1.000000 3 1.000000 0.007147 1.000000 46.700000 IGS_118 igs ndhI|ndhA ndhI-ndhA 119900 119983 0 84 SSC 0.015873 2 0 50 135 no 0.333333 2 0.500000 0.015873 1.000000 38.900000 ndhA gene ndhA ndhA 119984 122122 -1 2139 SSC 0.016409 52 14 7 118 no 1.000000 3 1.000000 0.016136 0.997195 54.100000 IGS_119 igs ndhA|ndhH ndhA-ndhH 122123 122123 0 1 SSC 0.000000 0 0 30 117 no 0.000000 1 0.000000 NA 1.000000 21.000000 ndhH gene ndhH ndhH 122124 123305 -1 1182 SSC 0.009024 16 0 31 2 no 1.000000 3 1.000000 0.009024 1.000000 49.700000 IGS_120 igs ndhH|rps15 ndhH-rps15 123306 123407 0 102 SSC 0.032680 5 0 19 113 no 1.000000 3 1.000000 0.032680 1.000000 59.800000 rps15 gene rps15 rps15 123408 123674 -1 267 SSC 0.009988 4 0 3 57 no 1.000000 3 1.000000 0.009988 1.000000 44.100000 IGS_121 igs rps15|ycf1 rps15-ycf1 123675 123989 0 315 SSC 0.028571 13 1 12 5 no 1.000000 3 1.000000 0.028629 1.000000 56.600000 ycf1 gene ycf1 ycf1 123990 129317 -1 5328 SSC 0.029592 232 3 38 89 yes 1.000000 3 1.000000 0.029603 1.000000 59.200000 IGS_122 igs ycf1|trnN ycf1-trnN 129318 129636 0 319 IRa 0.004180 2 0 300 86 no 0.333333 2 0.500000 0.004180 1.000000 34.500000 trnN tRNA trnN trnN 129637 129710 1 74 IRa 0.000000 0 0 140 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_123 igs trnN|trnR trnN-trnR 129711 130342 0 632 IRa 0.010565 10 3 214 300 no 1.000000 3 1.000000 0.010585 0.998418 66.000000 trnR tRNA trnR trnR 130343 130417 -1 75 IRa 0.000000 0 0 19 250 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_124 igs trnR|rrn5S trnR-rrn5S 130418 130659 0 242 IRa 0.000000 0 1 94 8 no 0.333333 2 0.500000 0.000000 0.995868 26.000000 rrn5S rRNA rrn5S rrn5S 130660 130780 -1 121 IRa 0.005510 1 0 300 162 no 0.333333 2 0.500000 0.005510 1.000000 40.700000 IGS_125 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 130781 131027 0 247 IRa 0.002699 1 0 112 300 no 0.333333 2 0.500000 0.002699 1.000000 35.100000 rrn4.5S rRNA rrn4.5S rrn4.5S 131028 131130 -1 103 IRa 0.000000 0 0 84 300 no 0.000000 1 0.000000 0.000000 1.000000 25.100000 IGS_126 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 131131 131228 0 98 IRa 0.000000 0 0 187 300 no 0.000000 1 0.000000 0.000000 1.000000 32.800000 rrn23S rRNA rrn23S rrn23S 131229 134038 -1 2810 IRa 0.001661 7 1 285 300 no 1.000000 3 1.000000 0.001661 1.000000 57.100000 IGS_127 igs rrn23S|trnA rrn23S-trnA 134039 134190 0 152 IRa 0.000000 0 0 285 269 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 134191 134226 -1 36 IRa 0.000000 0 0 300 233 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 135028 135064 -1 37 IRa 0.000000 0 0 300 279 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_130 igs trnA|trnI trnA-trnI 135065 135128 0 64 IRa 0.000000 0 0 300 215 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 135129 135168 -1 40 IRa 0.000000 0 0 300 175 no 0.000000 1 0.000000 0.000000 1.000000 31.900000 orf133 gene orf133 orf133 135431 135766 -1 336 IRa 0.000000 0 0 86 97 no 0.000000 1 0.000000 0.000000 1.000000 25.900000 IGS_133 igs orf133|trnI orf133-trnI 135767 136115 0 349 IRa 0.001910 1 0 300 243 no 0.333333 2 0.500000 0.001910 1.000000 42.200000 trnI_part1 tRNA trnI trnI 136116 136147 -1 32 IRa 0.000000 0 0 251 211 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_134 igs trnI|rrn16S trnI-rrn16S 136148 136445 0 298 IRa 0.004474 2 0 283 300 no 1.000000 3 1.000000 0.004474 1.000000 55.400000 rrn16S rRNA rrn16S rrn16S 136446 137936 -1 1491 IRa 0.000447 1 0 47 300 no 0.333333 2 0.500000 0.000447 1.000000 35.100000 IGS_135 igs rrn16S|trnV rrn16S-trnV 137937 138167 0 231 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_136 igs trnV|rps12 trnV-rps12 138240 140154 0 1915 IRa 0.005222 15 22 300 180 no 1.000000 3 1.000000 0.005264 1.000000 61.000000 rps12_part2 gene rps12 rps12 140155 140949 1 795 IRa 0.003354 4 0 211 300 no 1.000000 3 1.000000 0.003354 1.000000 60.900000 IGS_137 igs rps12|rps7 rps12-rps7 140950 141002 0 53 IRa 0.000000 0 0 100 300 no 0.000000 1 0.000000 0.000000 1.000000 26.200000 rps7 gene rps7 rps7 141003 141470 1 468 IRa 0.000000 0 0 153 149 no 0.000000 1 0.000000 0.000000 1.000000 33.400000 IGS_138 igs rps7|ndhB rps7-ndhB 141471 141783 0 313 IRa 0.004260 2 0 300 35 no 0.333333 2 0.500000 0.004260 1.000000 30.600000 ndhB gene ndhB ndhB 141784 144001 1 2218 IRa 0.001803 6 0 31 79 no 1.000000 3 1.000000 0.001803 1.000000 45.700000 IGS_139 igs ndhB|trnL ndhB-trnL 144002 144571 0 570 IRa 0.005848 5 0 48 151 no 1.000000 3 1.000000 0.005848 1.000000 50.500000 IGS_140 igs trnL|ycf2 trnL-ycf2 144655 145565 0 911 IRa 0.005854 8 0 149 219 no 1.000000 3 1.000000 0.005854 1.000000 58.700000 ycf2 gene ycf2 ycf2 145566 152438 -1 6873 IRa 0.002134 22 6 98 300 no 1.000000 3 1.000000 0.002135 1.000000 46.300000 IGS_141 igs ycf2|trnM ycf2-trnM 152439 152526 0 88 IRa 0.000000 0 0 208 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnM tRNA trnM trnM 152527 152601 1 75 IRa 0.000000 0 0 296 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_142 igs trnM|rpl23 trnM-rpl23 152602 152768 0 167 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 152769 153050 1 282 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_143 igs rpl23|rpl2 rpl23-rpl2 153051 153068 0 18 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 153069 154575 1 1507 IRa 0.001770 4 0 300 10 no 0.333333 2 0.500000 0.001770 1.000000 33.100000 IGS_144 igs rpl2|trnH rpl2-trnH 154576 1 0 170 IRa 0.019841 5 2 36 79 no 1.000000 3 1.000000 0.019841 0.988235 53.900000