feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 3 76 -1 74 LSC 0.000000 0 0 7 23 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_001 igs trnH|psbA trnH-psbA 77 348 0 272 LSC 0.039216 24 15 81 156 yes 1.000000 5 1.000000 0.038451 1.000000 78.100000 psbA gene psbA psbA 349 1410 -1 1062 LSC 0.007345 18 0 8 29 no 0.600000 4 0.750000 0.007345 1.000000 42.300000 IGS_002 igs psbA|trnK psbA-trnK 1411 1678 0 268 LSC 0.016418 11 1 113 149 no 0.600000 4 0.750000 0.016465 0.996269 51.300000 trnK_part2 tRNA trnK trnK 1679 1714 -1 36 LSC 0.000000 0 0 12 113 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 matK gene matK matK 2019 3533 -1 1515 LSC 0.013069 47 0 9 13 no 1.000000 5 1.000000 0.013069 1.000000 54.200000 IGS_005 igs matK|trnK matK-trnK 3534 4285 0 752 LSC 0.017450 30 14 5 21 no 1.000000 5 1.000000 0.015797 0.986702 58.800000 trnK_part1 tRNA trnK trnK 4286 4322 -1 37 LSC 0.010811 1 1 26 0 no 0.400000 3 0.666667 0.010886 1.000000 37.700000 IGS_006 igs trnK|trnQ trnK-trnQ 4323 6647 0 2325 LSC 0.019779 102 81 15 94 yes 1.000000 5 1.000000 0.019258 0.986667 61.300000 trnQ tRNA trnQ trnQ 6648 6719 -1 72 LSC 0.000000 0 0 15 22 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_007 igs trnQ|psbK trnQ-psbK 6720 7059 0 340 LSC 0.008235 6 5 87 8 no 1.000000 5 1.000000 0.008275 1.000000 46.600000 psbK gene psbK psbK 7060 7245 1 186 LSC 0.004301 2 0 45 4 no 0.400000 3 0.666667 0.004301 1.000000 29.800000 IGS_008 igs psbK|psbI psbK-psbI 7246 7538 0 293 LSC 0.034926 22 8 170 69 yes 1.000000 5 1.000000 0.032255 1.000000 70.900000 psbI gene psbI psbI 7539 7649 1 111 LSC 0.003604 1 0 25 8 no 0.200000 2 0.500000 0.003604 1.000000 25.800000 IGS_009 igs psbI|trnS psbI-trnS 7650 7745 0 96 LSC 0.016842 4 2 41 130 no 0.400000 3 0.666667 0.016954 0.989583 44.300000 trnS tRNA trnS trnS 7746 7833 -1 88 LSC 0.000000 0 0 5 42 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_010 igs trnS|trnT trnS-trnT 7834 8443 0 610 LSC 0.028634 38 5 93 36 yes 1.000000 5 1.000000 0.028293 1.000000 68.100000 trnT_part1 tRNA trnT trnT 8444 8477 1 34 LSC 0.000000 0 0 7 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 trnT_part2 tRNA trnT trnT 9198 9240 1 43 LSC 0.000000 0 0 108 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_013 igs trnT|trnR trnT-trnR 9241 9400 0 160 LSC 0.027044 9 14 151 93 yes 1.000000 5 1.000000 0.027979 0.993750 69.100000 trnR tRNA trnR trnR 9401 9472 1 72 LSC 0.000000 0 0 6 21 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_014 igs trnR|atpA trnR-atpA 9473 9772 0 300 LSC 0.028188 17 31 78 75 yes 1.000000 5 1.000000 0.025777 0.976667 67.900000 atpA gene atpA atpA 9773 11296 -1 1524 LSC 0.003018 11 0 14 70 no 0.600000 4 0.750000 0.003018 1.000000 39.500000 IGS_015 igs atpA|atpF atpA-atpF 11297 11360 0 64 LSC 0.000000 0 5 92 6 no 0.200000 2 0.500000 0.000000 1.000000 28.700000 atpF gene atpF atpF 11361 12644 -1 1284 LSC 0.007710 24 1 156 32 no 1.000000 5 1.000000 0.007714 1.000000 52.000000 IGS_016 igs atpF|atpH atpF-atpH 12645 13089 0 445 LSC 0.018202 18 17 29 87 no 1.000000 5 1.000000 0.018564 1.000000 60.500000 atpH gene atpH atpH 13090 13335 -1 246 LSC 0.003252 2 0 1 64 no 0.400000 3 0.666667 0.003252 1.000000 28.800000 IGS_017 igs atpH|atpI atpH-atpI 13336 13839 0 504 LSC 0.018388 21 28 11 69 no 1.000000 5 1.000000 0.018543 0.960317 60.700000 atpI gene atpI atpI 13840 14589 -1 750 LSC 0.003733 7 0 1 49 no 0.600000 4 0.750000 0.003733 1.000000 39.200000 IGS_018 igs atpI|rps2 atpI-rps2 14590 14831 0 242 LSC 0.010744 6 0 28 84 no 0.600000 4 0.750000 0.010744 1.000000 40.000000 rps2 gene rps2 rps2 14832 15542 -1 711 LSC 0.006751 12 0 79 55 no 1.000000 5 1.000000 0.006751 1.000000 53.000000 IGS_019 igs rps2|rpoC2 rps2-rpoC2 15543 15755 0 213 LSC 0.011268 5 0 23 4 no 0.600000 4 0.750000 0.011268 1.000000 38.300000 rpoC2 gene rpoC2 rpoC2 15756 19898 -1 4143 LSC 0.008979 90 0 19 79 no 1.000000 5 1.000000 0.008979 1.000000 47.000000 IGS_020 igs rpoC2|rpoC1 rpoC2-rpoC1 19899 20079 0 181 LSC 0.011050 5 0 5 97 no 0.600000 4 0.750000 0.011050 1.000000 38.800000 rpoC1 gene rpoC1 rpoC1 20080 22917 -1 2838 LSC 0.008051 54 11 21 71 no 1.000000 5 1.000000 0.007985 0.997886 48.900000 IGS_021 igs rpoC1|rpoB rpoC1-rpoB 22918 22943 0 26 LSC 0.000000 0 0 92 45 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 rpoB gene rpoB rpoB 22944 26162 -1 3219 LSC 0.004908 38 0 118 5 no 1.000000 5 1.000000 0.004908 1.000000 44.300000 IGS_022 igs rpoB|trnC rpoB-trnC 26163 27304 0 1142 LSC 0.016622 40 33 29 109 no 1.000000 5 1.000000 0.015045 0.971979 60.400000 trnC tRNA trnC trnC 27305 27376 1 72 LSC 0.000000 0 0 30 37 no 0.000000 1 0.000000 0.000000 1.000000 21.000000 IGS_023 igs trnC|ycf6 trnC-ycf6 27377 27996 0 620 LSC 0.016181 25 2 102 15 yes 1.000000 5 1.000000 0.016181 0.996774 57.500000 ycf6 gene ycf6 ycf6 27997 28086 1 90 LSC 0.004444 1 0 7 8 no 0.200000 2 0.500000 0.004444 1.000000 26.400000 IGS_024 igs ycf6|psbM ycf6-psbM 28087 28627 0 541 LSC 0.014870 19 3 74 57 no 1.000000 5 1.000000 0.014870 0.994455 58.400000 psbM gene psbM psbM 28628 28732 -1 105 LSC 0.003810 1 0 42 20 no 0.200000 2 0.500000 0.003810 1.000000 26.900000 IGS_025 igs psbM|trnD psbM-trnD 28733 29788 0 1056 LSC 0.023501 50 34 47 63 yes 1.000000 5 1.000000 0.020742 0.977273 66.900000 trnD tRNA trnD trnD 29789 29865 -1 77 LSC 0.005195 1 0 8 7 no 0.200000 2 0.500000 0.005195 1.000000 27.000000 IGS_026 igs trnD|trnY trnD-trnY 29866 30300 0 435 LSC 0.032414 32 0 13 0 yes 1.000000 5 1.000000 0.032414 1.000000 64.100000 trnY tRNA trnY trnY 30301 30387 -1 87 LSC 0.004598 1 0 4 11 no 0.200000 2 0.500000 0.004598 1.000000 26.300000 IGS_027 igs trnY|trnE trnY-trnE 30388 30443 0 56 LSC 0.028571 3 0 86 124 no 0.600000 4 0.750000 0.028571 1.000000 56.000000 IGS_028 igs trnE|trnT trnE-trnT 30519 31314 0 796 LSC 0.016960 30 10 106 81 no 1.000000 5 1.000000 0.017064 0.998744 63.600000 IGS_029 igs trnT|psbD trnT-psbD 31389 32647 0 1259 LSC 0.017395 48 116 74 260 yes 1.000000 5 1.000000 0.017442 0.963463 66.400000 psbD gene psbD psbD 32648 33709 1 1062 LSC 0.003955 9 0 75 138 no 1.000000 5 1.000000 0.003955 1.000000 52.200000 psbC gene psbC psbC 33657 35078 1 1422 LSC 0.003868 13 0 16 4 no 1.000000 5 1.000000 0.003868 1.000000 46.900000 IGS_031 igs psbC|trnS psbC-trnS 35079 35256 0 178 LSC 0.028090 11 2 300 32 no 1.000000 5 1.000000 0.028256 1.000000 61.600000 trnS tRNA trnS trnS 35257 35349 -1 93 LSC 0.004301 1 0 7 16 no 0.200000 2 0.500000 0.004301 1.000000 26.300000 IGS_032 igs trnS|ycf9 trnS-ycf9 35350 35695 0 346 LSC 0.008382 7 3 60 24 no 1.000000 5 1.000000 0.007830 1.000000 47.600000 ycf9 gene ycf9 ycf9 35696 35884 1 189 LSC 0.010582 5 0 112 29 no 0.600000 4 0.750000 0.010582 1.000000 40.200000 IGS_033 igs ycf9|trnG ycf9-trnG 35885 36389 0 505 LSC 0.022951 27 42 3 99 no 1.000000 5 1.000000 0.022635 0.964356 63.600000 trnG tRNA trnG trnG 36390 36461 1 72 LSC 0.000000 0 0 6 27 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_034 igs trnG|trnM trnG-trnM 36462 36611 0 150 LSC 0.005333 2 1 78 25 no 0.600000 4 0.750000 0.005342 1.000000 36.700000 trnM tRNA trnM trnM 36612 36686 -1 75 LSC 0.005333 1 0 84 47 no 0.200000 2 0.500000 0.005333 1.000000 30.100000 IGS_035 igs trnM|rps14 trnM-rps14 36687 36841 0 155 LSC 0.007742 3 9 49 9 no 0.400000 3 0.666667 0.008100 1.000000 38.700000 rps14 gene rps14 rps14 36842 37144 -1 303 LSC 0.006601 5 0 7 48 no 0.600000 4 0.750000 0.006601 1.000000 35.600000 IGS_036 igs rps14|psaB rps14-psaB 37145 37278 0 134 LSC 0.020896 6 2 104 39 no 1.000000 5 1.000000 0.020997 1.000000 57.200000 psaB gene psaB psaB 37279 39483 -1 2205 LSC 0.002630 14 0 20 271 no 1.000000 5 1.000000 0.002630 1.000000 45.800000 IGS_037 igs psaB|psaA psaB-psaA 39484 39508 0 25 LSC 0.000000 0 0 155 246 no 0.000000 1 0.000000 0.000000 1.000000 30.400000 psaA gene psaA psaA 39509 41761 -1 2253 LSC 0.002308 12 0 180 80 no 1.000000 5 1.000000 0.002308 1.000000 49.900000 IGS_038 igs psaA|ycf3 psaA-ycf3 41762 42516 0 755 LSC 0.015797 24 37 209 5 no 1.000000 5 1.000000 0.013421 0.961589 59.800000 ycf3 gene ycf3 ycf3 42517 44554 -1 2038 LSC 0.003867 19 50 8 55 no 1.000000 5 1.000000 0.003891 0.989696 48.700000 IGS_039 igs ycf3|trnS ycf3-trnS 44555 44793 0 239 LSC 0.011715 7 0 178 90 no 1.000000 5 1.000000 0.011715 1.000000 53.200000 trnS tRNA trnS trnS 44794 44882 1 89 LSC 0.000000 0 0 19 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_040 igs trnS|rps4 trnS-rps4 44883 45152 0 270 LSC 0.013333 9 0 108 114 no 0.600000 4 0.750000 0.013333 1.000000 48.300000 rps4 gene rps4 rps4 45153 45758 -1 606 LSC 0.003960 6 0 49 95 no 0.600000 4 0.750000 0.003960 1.000000 42.900000 IGS_041 igs rps4|trnT rps4-trnT 45759 46139 0 381 LSC 0.024737 22 3 71 84 no 1.000000 5 1.000000 0.024832 0.994751 63.600000 IGS_042 igs trnT|trnL trnT-trnL 46215 47010 0 796 LSC 0.017474 30 79 81 12 no 1.000000 5 1.000000 0.016767 0.983668 62.300000 trnL_part1 tRNA trnL trnL 47011 47045 1 35 LSC 0.017143 1 0 41 300 no 0.000000 2 0.000000 0.017143 1.000000 33.100000 trnL_part2 tRNA trnL trnL 47327 47376 1 50 LSC 0.000000 0 0 300 11 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_045 igs trnL|trnF trnL-trnF 47377 47720 0 344 LSC 0.019186 15 3 300 80 no 1.000000 5 1.000000 0.019326 0.994186 59.400000 trnF tRNA trnF trnF 47721 47793 1 73 LSC 0.000000 0 0 40 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_046 igs trnF|ndhJ trnF-ndhJ 47794 48383 0 590 LSC 0.017069 21 41 113 30 no 1.000000 5 1.000000 0.017120 0.979661 63.100000 ndhJ gene ndhJ ndhJ 48384 48860 -1 477 LSC 0.006709 8 0 12 21 no 0.600000 4 0.750000 0.006709 1.000000 39.700000 IGS_047 igs ndhJ|psbG ndhJ-psbG 48861 48961 0 101 LSC 0.015842 4 0 14 8 no 1.000000 5 1.000000 0.015842 1.000000 50.200000 psbG gene psbG psbG 48962 49630 -1 669 LSC 0.003288 5 0 3 22 no 0.600000 4 0.750000 0.003288 1.000000 38.900000 IGS_048 igs psbG|ndhC psbG-ndhC 49631 49680 0 50 LSC 0.016000 2 0 134 18 no 0.400000 3 0.666667 0.016000 1.000000 39.800000 ndhC gene ndhC ndhC 49681 50043 -1 363 LSC 0.009366 8 0 18 31 no 0.600000 4 0.750000 0.009366 1.000000 39.600000 IGS_049 igs ndhC|trnV ndhC-trnV 50044 50851 0 808 LSC 0.016935 31 11 14 47 no 1.000000 5 1.000000 0.016472 0.998762 58.700000 trnV_part2 tRNA trnV trnV 50852 50886 -1 35 LSC 0.000000 0 0 36 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 trnV_part1 tRNA trnV trnV 51494 51532 -1 39 LSC 0.000000 0 0 18 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_052 igs trnV|trnM trnV-trnM 51533 51716 0 184 LSC 0.014130 6 0 57 15 no 1.000000 5 1.000000 0.014130 1.000000 49.100000 trnM tRNA trnM trnM 51717 51789 1 73 LSC 0.005479 1 0 10 76 no 0.200000 2 0.500000 0.005479 1.000000 27.400000 IGS_053 igs trnM|atpE trnM-atpE 51790 51932 0 143 LSC 0.011189 4 6 57 120 no 1.000000 5 1.000000 0.011385 1.000000 55.200000 atpE gene atpE atpE 51933 52331 -1 399 LSC 0.007519 7 0 0 118 no 0.600000 4 0.750000 0.007519 1.000000 37.600000 atpB gene atpB atpB 52328 53824 -1 1497 LSC 0.003874 14 0 35 29 no 1.000000 5 1.000000 0.003874 1.000000 48.800000 IGS_055 igs atpB|rbcL atpB-rbcL 53825 54636 0 812 LSC 0.009113 18 26 160 107 no 1.000000 5 1.000000 0.009302 0.981527 62.000000 rbcL gene rbcL rbcL 54637 56076 1 1440 LSC 0.002361 8 0 81 21 no 1.000000 5 1.000000 0.002361 1.000000 47.100000 IGS_056 igs rbcL|accD rbcL-accD 56077 56762 0 686 LSC 0.021505 28 173 228 53 yes 1.000000 5 1.000000 0.020127 0.986880 66.800000 accD gene accD accD 56763 58205 1 1443 LSC 0.009009 30 0 9 33 no 1.000000 5 1.000000 0.009009 1.000000 51.100000 IGS_057 igs accD|psaI accD-psaI 58206 58888 0 683 LSC 0.014116 22 10 30 26 no 1.000000 5 1.000000 0.014116 0.985359 57.400000 psaI gene psaI psaI 58889 59002 1 114 LSC 0.010526 3 0 65 32 no 0.400000 3 0.666667 0.010526 1.000000 36.700000 IGS_058 igs psaI|ycf4 psaI-ycf4 59003 59441 0 439 LSC 0.007711 7 24 10 121 no 0.600000 4 0.750000 0.007711 0.945330 43.300000 ycf4 gene ycf4 ycf4 59442 59996 1 555 LSC 0.006486 9 0 17 27 no 0.600000 4 0.750000 0.006486 1.000000 41.500000 IGS_059 igs ycf4|ycf10/cemA ycf4-ycf10/cemA 59997 60454 0 458 LSC 0.019432 21 4 81 20 no 1.000000 5 1.000000 0.019532 0.997817 57.700000 ycf10/cemA gene ycf10/cemA ycf10/cemA 60455 61144 1 690 LSC 0.006522 10 0 103 5 no 1.000000 5 1.000000 0.006522 1.000000 48.900000 IGS_060 igs ycf10/cemA|petA ycf10/cemA-petA 61145 61369 0 225 LSC 0.011607 6 1 63 216 no 1.000000 5 1.000000 0.011607 0.995556 51.200000 petA gene petA petA 61370 62332 1 963 LSC 0.007477 17 0 99 35 no 1.000000 5 1.000000 0.007477 1.000000 51.900000 IGS_061 igs petA|psbJ petA-psbJ 62333 63368 0 1036 LSC 0.024156 52 73 135 9 yes 1.000000 5 1.000000 0.024129 0.939189 65.500000 psbJ gene psbJ psbJ 63369 63491 -1 123 LSC 0.011382 3 0 68 41 no 0.600000 4 0.750000 0.011382 1.000000 41.200000 IGS_062 igs psbJ|psbL psbJ-psbL 63492 63635 0 144 LSC 0.008333 3 4 33 124 no 0.600000 4 0.750000 0.008452 1.000000 42.100000 psbL gene psbL psbL 63636 63752 -1 117 LSC 0.000000 0 0 18 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_063 igs psbL|psbF psbL-psbF 63753 63773 0 21 LSC 0.019048 1 0 135 54 no 0.200000 2 0.500000 0.019048 1.000000 41.100000 psbF gene psbF psbF 63774 63893 -1 120 LSC 0.008333 2 0 13 39 no 0.200000 3 0.333333 0.008333 1.000000 29.300000 IGS_064 igs psbF|psbE psbF-psbE 63894 63902 0 9 LSC 0.000000 0 0 32 30 no 0.000000 1 0.000000 NA 1.000000 21.000000 psbE gene psbE psbE 63903 64154 -1 252 LSC 0.003175 2 0 41 36 no 0.400000 3 0.666667 0.003175 1.000000 31.400000 IGS_065 igs psbE|ORF31 psbE-ORF31 64155 65109 0 955 LSC 0.023462 48 38 180 64 yes 1.000000 5 1.000000 0.022918 0.975916 69.300000 ORF31 gene ORF31 ORF31 65110 65205 1 96 LSC 0.004167 1 0 6 50 no 0.200000 2 0.500000 0.004167 1.000000 26.100000 IGS_066 igs ORF31|petG ORF31-petG 65206 65392 0 187 LSC 0.016043 7 0 31 71 no 0.600000 4 0.750000 0.016043 1.000000 44.200000 petG gene petG petG 65393 65506 1 114 LSC 0.003509 1 0 2 8 no 0.200000 2 0.500000 0.003509 1.000000 25.300000 IGS_067 igs petG|trnW petG-trnW 65507 65635 0 129 LSC 0.031008 10 0 42 53 no 0.600000 4 0.750000 0.031008 1.000000 56.800000 trnW tRNA trnW trnW 65636 65709 -1 74 LSC 0.010811 2 0 6 0 no 0.400000 3 0.666667 0.010811 1.000000 34.500000 IGS_068 igs trnW|trnP trnW-trnP 65710 65895 0 186 LSC 0.043011 15 1 17 143 yes 1.000000 5 1.000000 0.043168 1.000000 68.800000 trnP tRNA trnP trnP 65896 65971 -1 76 LSC 0.000000 0 0 0 67 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_069 igs trnP|psaJ trnP-psaJ 65972 66306 0 335 LSC 0.014371 11 4 76 20 no 1.000000 5 1.000000 0.014454 0.997015 51.600000 psaJ gene psaJ psaJ 66307 66435 1 129 LSC 0.012403 4 0 93 13 no 0.600000 4 0.750000 0.012403 1.000000 40.400000 IGS_070 igs psaJ|rpl33 psaJ-rpl33 66436 66870 0 435 LSC 0.024884 26 16 1 8 no 1.000000 5 1.000000 0.024730 0.986207 63.000000 rpl33 gene rpl33 rpl33 66871 67071 1 201 LSC 0.009950 5 0 13 27 no 0.600000 4 0.750000 0.009950 1.000000 38.600000 IGS_071 igs rpl33|rps18 rpl33-rps18 67072 67306 0 235 LSC 0.026667 15 2 48 8 no 1.000000 5 1.000000 0.024790 1.000000 59.000000 rps18 gene rps18 rps18 67307 67612 1 306 LSC 0.003922 3 0 15 3 no 0.200000 2 0.500000 0.003922 1.000000 25.800000 IGS_072 igs rps18|rpl20 rps18-rpl20 67613 67910 0 298 LSC 0.016779 12 3 50 114 no 0.600000 4 0.750000 0.016876 1.000000 47.500000 rpl20 gene rpl20 rpl20 67911 68264 -1 354 LSC 0.012994 11 0 36 20 no 1.000000 5 1.000000 0.012994 1.000000 49.900000 IGS_073 igs rpl20|rps12 rpl20-rps12 68265 69031 0 767 LSC 0.013289 24 8 113 41 no 1.000000 5 1.000000 0.013297 0.990874 57.700000 rps12_part1 gene rps12 rps12 69032 69145 -1 114 LSC 0.003509 1 0 31 1 no 0.200000 2 0.500000 0.003509 1.000000 25.300000 IGS_074 igs rps12|clpP rps12-clpP 69146 69328 0 183 LSC 0.012022 5 1 72 300 no 0.600000 4 0.750000 0.012049 1.000000 44.900000 clpP gene clpP clpP 69329 71391 -1 2063 LSC 0.008447 39 17 87 5 no 1.000000 5 1.000000 0.008471 0.998546 50.000000 IGS_075 igs clpP|psbB clpP-psbB 71392 71834 0 443 LSC 0.015049 14 7 32 215 no 1.000000 5 1.000000 0.013638 1.000000 55.500000 psbB gene psbB psbB 71835 73361 1 1527 LSC 0.004191 15 0 78 17 no 1.000000 5 1.000000 0.004191 1.000000 48.100000 IGS_076 igs psbB|psbT psbB-psbT 73362 73551 0 190 LSC 0.023656 9 8 11 44 no 1.000000 5 1.000000 0.019160 0.957895 58.700000 psbT gene psbT psbT 73552 73653 1 102 LSC 0.003922 1 0 56 20 no 0.200000 2 0.500000 0.003922 1.000000 27.000000 IGS_077 igs psbT|psbN psbT-psbN 73654 73718 0 65 LSC 0.006154 1 0 57 54 no 0.200000 2 0.500000 0.006154 1.000000 31.200000 psbN gene psbN psbN 73719 73850 -1 132 LSC 0.003030 1 0 44 81 no 0.200000 2 0.500000 0.003030 1.000000 28.100000 IGS_078 igs psbN|psbH psbN-psbH 73851 73954 0 104 LSC 0.007692 2 0 77 31 no 0.200000 2 0.500000 0.007692 1.000000 30.700000 psbH gene psbH psbH 73955 74176 1 222 LSC 0.012613 6 0 8 34 no 0.200000 3 0.333333 0.012613 1.000000 32.200000 IGS_079 igs psbH|petB psbH-petB 74177 74310 0 134 LSC 0.017910 6 0 10 105 no 1.000000 5 1.000000 0.017910 1.000000 51.900000 petB gene petB petB 74311 75748 1 1438 LSC 0.007875 25 6 24 58 no 1.000000 5 1.000000 0.007882 0.997914 51.700000 IGS_080 igs petB|petD petB-petD 75749 75932 0 184 LSC 0.017391 8 2 114 34 no 1.000000 5 1.000000 0.017499 1.000000 54.500000 petD gene petD petD 75933 77132 1 1200 LSC 0.009833 28 2 15 66 no 1.000000 5 1.000000 0.009839 1.000000 52.400000 IGS_081 igs petD|rpoA petD-rpoA 77133 77351 0 219 LSC 0.038003 16 20 12 74 yes 1.000000 5 1.000000 0.032368 0.917808 67.900000 rpoA gene rpoA rpoA 77352 78341 -1 990 LSC 0.007114 16 6 6 1 no 1.000000 5 1.000000 0.007114 0.993939 49.600000 IGS_082 igs rpoA|rps11 rpoA-rps11 78342 78410 0 69 LSC 0.017391 3 0 36 105 no 0.600000 4 0.750000 0.017391 1.000000 46.000000 rps11 gene rps11 rps11 78411 78827 -1 417 LSC 0.006954 6 0 7 55 no 1.000000 5 1.000000 0.006954 1.000000 45.400000 IGS_083 igs rps11|rpl36 rps11-rpl36 78828 78935 0 108 LSC 0.011111 3 9 26 164 no 0.600000 4 0.750000 0.011616 1.000000 45.600000 rpl36 gene rpl36 rpl36 78936 79049 -1 114 LSC 0.000000 0 0 43 50 no 0.000000 1 0.000000 0.000000 1.000000 22.000000 IGS_084 igs rpl36|rps8 rpl36-rps8 79050 79522 0 473 LSC 0.035244 39 2 157 6 yes 1.000000 5 1.000000 0.035244 0.995772 68.100000 rps8 gene rps8 rps8 79523 79927 -1 405 LSC 0.010864 11 0 6 57 no 0.600000 4 0.750000 0.010864 1.000000 40.900000 IGS_085 igs rps8|rpl14 rps8-rpl14 79928 80163 0 236 LSC 0.012037 6 20 78 9 no 1.000000 5 1.000000 0.012037 0.915254 49.800000 rpl14 gene rpl14 rpl14 80164 80532 -1 369 LSC 0.002168 2 0 20 91 no 0.400000 3 0.666667 0.002168 1.000000 30.800000 IGS_086 igs rpl14|rpl16 rpl14-rpl16 80533 80670 0 138 LSC 0.006504 2 15 56 7 no 0.400000 3 0.666667 0.006504 0.891304 33.700000 rpl16 gene rpl16 rpl16 80671 82173 -1 1503 LSC 0.011965 40 44 11 15 no 1.000000 5 1.000000 0.011428 0.995343 56.600000 IGS_087 igs rpl16|rps3 rpl16-rps3 82174 82358 0 185 LSC 0.016000 7 15 27 5 no 1.000000 5 1.000000 0.016118 0.945946 53.900000 rps3 gene rps3 rps3 82359 83015 -1 657 LSC 0.010807 16 0 6 0 no 1.000000 5 1.000000 0.010807 1.000000 51.700000 rpl22 gene rpl22 rpl22 83000 83482 -1 483 LSC 0.012008 14 0 124 3 no 1.000000 5 1.000000 0.012008 1.000000 50.600000 IGS_089 igs rpl22|rps19 rpl22-rps19 83483 83538 0 56 LSC 0.007273 1 2 11 56 no 0.400000 3 0.666667 0.007407 0.982143 36.300000 rps19 gene rps19 rps19 83539 83817 -1 279 LSC 0.005735 4 0 52 300 no 0.600000 4 0.750000 0.005735 1.000000 38.300000 IGS_090 igs rps19|rpl2 rps19-rpl2 83818 83859 0 42 IRb 0.000000 0 0 107 300 no 0.000000 1 0.000000 0.000000 1.000000 26.800000 rpl2 gene rpl2 rpl2 83860 85374 -1 1515 IRb 0.002389 9 8 149 94 no 0.600000 4 0.750000 0.002389 0.994719 45.500000 IGS_091 igs rpl2|rpl23 rpl2-rpl23 85375 85392 0 18 IRb 0.000000 0 0 93 76 no 0.000000 1 0.000000 NA 1.000000 24.400000 rpl23 gene rpl23 rpl23 85393 85674 -1 282 IRb 0.004965 3 0 111 300 no 0.600000 4 0.750000 0.004965 1.000000 41.900000 IGS_092 igs rpl23|trnM rpl23-trnM 85675 85841 0 167 IRb 0.000000 0 0 11 279 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 trnM tRNA trnM trnM 85842 85916 -1 75 IRb 0.000000 0 0 178 204 no 0.000000 1 0.000000 0.000000 1.000000 32.100000 IGS_093 igs trnM|ycf2 trnM-ycf2 85917 86004 0 88 IRb 0.000000 0 0 253 116 no 0.000000 1 0.000000 0.000000 1.000000 27.400000 ycf2 gene ycf2 ycf2 86005 92880 1 6876 IRb 0.002749 44 24 300 93 no 1.000000 5 1.000000 0.002753 1.000000 46.900000 IGS_094 igs ycf2|trnL ycf2-trnL 92881 93742 0 862 IRb 0.003944 8 0 18 87 no 0.600000 4 0.750000 0.003944 1.000000 40.500000 IGS_095 igs trnL|ndhB trnL-ndhB 93826 94401 0 576 IRb 0.007292 9 1 139 216 no 1.000000 5 1.000000 0.005737 0.998264 59.100000 ndhB gene ndhB ndhB 94402 96625 -1 2224 IRb 0.001529 8 0 64 24 no 1.000000 5 1.000000 0.001529 1.000000 45.200000 IGS_096 igs ndhB|rps7 ndhB-rps7 96626 96937 0 312 IRb 0.002564 2 0 248 55 no 0.400000 3 0.666667 0.002564 1.000000 32.600000 rps7 gene rps7 rps7 96938 97405 -1 468 IRb 0.002137 2 0 76 281 no 0.200000 3 0.333333 0.002137 1.000000 33.200000 IGS_097 igs rps7|trnV rps7-trnV 97406 100175 0 2770 IRb 0.003330 22 26 207 300 no 1.000000 5 1.000000 0.003345 0.995307 59.600000 IGS_098 igs trnV|rrn16S trnV-rrn16S 100248 100478 0 231 IRb 0.000000 0 0 256 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 100479 101969 1 1491 IRb 0.000268 1 0 300 135 no 0.200000 2 0.500000 0.000268 1.000000 39.100000 IGS_099 igs rrn16S|trnE rrn16S-trnE 101970 102192 0 223 IRb 0.001794 1 0 239 300 no 0.200000 2 0.500000 0.001794 1.000000 38.900000 trnE_part1 tRNA trnE trnE 102193 102224 1 32 IRb 0.000000 0 0 87 300 no 0.000000 1 0.000000 0.000000 1.000000 25.300000 orf133 gene orf133 orf133 102574 102909 1 336 IRb 0.009524 7 0 300 96 no 1.000000 5 1.000000 0.009524 1.000000 52.300000 IGS_102 igs orf133|trnE orf133-trnE 102910 103172 0 263 IRb 0.003042 2 1 37 300 no 0.600000 4 0.750000 0.003045 1.000000 35.500000 trnE_part2 tRNA trnE trnE 103173 103212 1 40 IRb 0.000000 0 0 35 300 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_103 igs trnE|trnA trnE-trnA 103213 103276 0 64 IRb 0.000000 0 0 75 242 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 trnA_part1 tRNA trnA trnA 103277 103313 1 37 IRb 0.000000 0 0 139 205 no 0.000000 1 0.000000 0.000000 1.000000 29.200000 trnA_part2 tRNA trnA trnA 104115 104150 1 36 IRb 0.000000 0 0 144 70 no 0.000000 1 0.000000 0.000000 1.000000 24.000000 IGS_106 igs trnA|rrn23S trnA-rrn23S 104151 104302 0 152 IRb 0.002632 1 0 180 285 no 0.200000 2 0.500000 0.002632 1.000000 38.000000 rrn23S rRNA rrn23S rrn23S 104303 107112 1 2810 IRb 0.000569 4 0 81 15 no 0.400000 3 0.666667 0.000569 1.000000 31.300000 IGS_107 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 107113 107210 0 98 IRb 0.008163 2 0 300 219 no 0.400000 3 0.666667 0.008163 1.000000 47.500000 rrn4.5S rRNA rrn4.5S rrn4.5S 107211 107313 1 103 IRb 0.000000 0 0 45 116 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 IGS_108 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 107314 107560 0 247 IRb 0.008097 5 0 148 170 no 1.000000 5 1.000000 0.008097 1.000000 54.800000 rrn5S rRNA rrn5S rrn5S 107561 107681 1 121 IRb 0.000000 0 0 26 49 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_109 igs rrn5S|trnR rrn5S-trnR 107682 107916 0 235 IRb 0.010213 6 0 147 166 no 0.400000 3 0.666667 0.010213 1.000000 45.100000 trnR tRNA trnR trnR 107917 107991 1 75 IRb 0.000000 0 0 49 91 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_110 igs trnR|trnN trnR-trnN 107992 108617 0 626 IRb 0.006550 9 7 124 300 no 1.000000 5 1.000000 0.006593 1.000000 59.100000 trnN tRNA trnN trnN 108618 108691 -1 74 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_111 igs trnN|ycf1 trnN-ycf1 108692 109010 0 319 IRb 0.000000 0 0 300 72 no 0.000000 1 0.000000 0.000000 1.000000 24.500000 ycf1 gene ycf1 ycf1 109011 110042 1 1032 IRb 0.006202 15 0 300 5 no 1.000000 5 1.000000 0.006202 1.000000 48.700000 ndhF gene ndhF ndhF 110004 112244 -1 2241 SSC 0.008657 46 0 3 35 no 1.000000 5 1.000000 0.008657 1.000000 48.900000 IGS_113 igs ndhF|rpl32 ndhF-rpl32 112245 113054 0 810 SSC 0.024777 43 37 5 41 yes 1.000000 5 1.000000 0.023819 0.962963 66.200000 rpl32 gene rpl32 rpl32 113055 113213 1 159 SSC 0.007547 3 0 1 33 no 0.400000 3 0.666667 0.007547 1.000000 32.100000 IGS_114 igs rpl32|trnL rpl32-trnL 113214 114120 0 907 SSC 0.030356 60 70 54 96 yes 1.000000 5 1.000000 0.029336 0.998897 75.000000 IGS_115 igs trnL|ycf5 trnL-ycf5 114203 114312 0 110 SSC 0.023636 6 1 99 55 no 1.000000 5 1.000000 0.023770 1.000000 60.200000 ycf5 gene ycf5 ycf5 114313 115299 1 987 SSC 0.009321 22 0 5 20 no 1.000000 5 1.000000 0.009321 1.000000 51.100000 IGS_116 igs ycf5|ndhD ycf5-ndhD 115300 115517 0 218 SSC 0.030275 14 0 133 26 no 1.000000 5 1.000000 0.030275 1.000000 61.100000 ndhD gene ndhD ndhD 115518 117038 -1 1521 SSC 0.008416 29 0 8 17 no 1.000000 5 1.000000 0.008416 1.000000 50.500000 IGS_117 igs ndhD|psaC ndhD-psaC 117039 117174 0 136 SSC 0.008824 3 2 24 105 no 0.600000 4 0.750000 0.008873 1.000000 40.200000 psaC gene psaC psaC 117175 117420 -1 246 SSC 0.003252 2 0 27 1 no 0.200000 2 0.500000 0.003252 1.000000 25.100000 IGS_118 igs psaC|ndhE psaC-ndhE 117421 117660 0 240 SSC 0.018410 11 1 122 18 no 1.000000 5 1.000000 0.018410 0.995833 53.200000 ndhE gene ndhE ndhE 117661 117966 -1 306 SSC 0.007190 5 0 30 43 no 1.000000 5 1.000000 0.007190 1.000000 45.200000 IGS_119 igs ndhE|ndhG ndhE-ndhG 117967 118227 0 261 SSC 0.020784 12 7 146 129 yes 1.000000 5 1.000000 0.020807 0.977011 64.700000 ndhG gene ndhG ndhG 118228 118758 -1 531 SSC 0.006780 8 0 4 43 no 1.000000 5 1.000000 0.006780 1.000000 47.500000 IGS_120 igs ndhG|ndhI ndhG-ndhI 118759 119094 0 336 SSC 0.015960 11 10 57 105 no 1.000000 5 1.000000 0.014672 0.982143 56.700000 ndhI gene ndhI ndhI 119095 119598 -1 504 SSC 0.005556 6 0 38 24 no 1.000000 5 1.000000 0.005556 1.000000 47.500000 IGS_121 igs ndhI|ndhA ndhI-ndhA 119599 119682 0 84 SSC 0.009524 2 0 16 12 no 0.400000 3 0.666667 0.009524 1.000000 34.400000 ndhA gene ndhA ndhA 119683 121856 -1 2174 SSC 0.013232 66 11 16 121 no 1.000000 5 1.000000 0.013253 0.997700 53.800000 IGS_122 igs ndhA|ndhH ndhA-ndhH 121857 121857 0 1 SSC 0.000000 0 0 16 120 no 0.000000 1 0.000000 NA 1.000000 20.000000 ndhH gene ndhH ndhH 121858 123039 -1 1182 SSC 0.008122 23 0 17 8 no 1.000000 5 1.000000 0.008122 1.000000 50.400000 IGS_123 igs ndhH|rps15 ndhH-rps15 123040 123141 0 102 SSC 0.027451 7 0 38 0 no 1.000000 5 1.000000 0.027451 1.000000 58.400000 rps15 gene rps15 rps15 123142 123408 -1 267 SSC 0.014981 8 0 3 91 no 1.000000 5 1.000000 0.014981 1.000000 48.200000 IGS_124 igs rps15|ycf1 rps15-ycf1 123409 123758 0 350 SSC 0.022989 18 14 6 96 no 1.000000 5 1.000000 0.023649 0.968571 59.600000 ycf1 gene ycf1 ycf1 123759 129095 -1 5337 SSC 0.016414 201 21 36 300 yes 1.000000 5 1.000000 0.016459 0.998314 52.700000 IGS_125 igs ycf1|trnN ycf1-trnN 129096 129414 0 319 IRa 0.000000 0 0 72 300 no 0.000000 1 0.000000 0.000000 1.000000 24.500000 trnN tRNA trnN trnN 129415 129488 1 74 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_126 igs trnN|trnR trnN-trnR 129489 130114 0 626 IRa 0.008253 11 7 300 124 no 1.000000 5 1.000000 0.007556 1.000000 60.200000 trnR tRNA trnR trnR 130115 130189 -1 75 IRa 0.000000 0 0 91 49 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_127 igs trnR|rrn5S trnR-rrn5S 130190 130424 0 235 IRa 0.006809 4 0 166 147 no 0.400000 3 0.666667 0.006809 1.000000 42.500000 rrn5S rRNA rrn5S rrn5S 130425 130545 -1 121 IRa 0.000000 0 0 55 26 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_128 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 130546 130792 0 247 IRa 0.008097 5 0 176 148 no 1.000000 5 1.000000 0.008097 1.000000 54.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 130793 130895 -1 103 IRa 0.000000 0 0 116 45 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 IGS_129 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 130896 130993 0 98 IRa 0.008163 2 0 219 300 no 0.400000 3 0.666667 0.008163 1.000000 47.500000 rrn23S rRNA rrn23S rrn23S 130994 133803 -1 2810 IRa 0.000569 4 0 15 81 no 0.400000 3 0.666667 0.000569 1.000000 31.300000 IGS_130 igs rrn23S|trnA rrn23S-trnA 133804 133955 0 152 IRa 0.002632 1 0 285 180 no 0.200000 2 0.500000 0.002632 1.000000 38.000000 trnA_part2 tRNA trnA trnA 133956 133991 -1 36 IRa 0.000000 0 0 70 144 no 0.000000 1 0.000000 0.000000 1.000000 24.000000 trnA_part1 tRNA trnA trnA 134793 134829 -1 37 IRa 0.000000 0 0 205 139 no 0.000000 1 0.000000 0.000000 1.000000 29.200000 IGS_133 igs trnA|trnE trnA-trnE 134830 134893 0 64 IRa 0.000000 0 0 242 75 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 trnE_part2 tRNA trnE trnE 134894 134933 -1 40 IRa 0.000000 0 0 300 35 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 orf133 gene orf133 orf133 135197 135532 -1 336 IRa 0.009524 7 0 96 300 no 1.000000 5 1.000000 0.009524 1.000000 52.300000 IGS_136 igs orf133|trnE orf133-trnE 135533 135881 0 349 IRa 0.000000 0 0 160 119 no 0.000000 1 0.000000 0.000000 1.000000 28.700000 trnE_part1 tRNA trnE trnE 135882 135913 -1 32 IRa 0.000000 0 0 300 87 no 0.000000 1 0.000000 0.000000 1.000000 25.300000 IGS_137 igs trnE|rrn16S trnE-rrn16S 135914 136136 0 223 IRa 0.001794 1 0 300 239 no 0.200000 2 0.500000 0.001794 1.000000 38.900000 rrn16S rRNA rrn16S rrn16S 136137 137627 -1 1491 IRa 0.000268 1 0 135 300 no 0.200000 2 0.500000 0.000268 1.000000 39.100000 IGS_138 igs rrn16S|trnV rrn16S-trnV 137628 137858 0 231 IRa 0.000000 0 0 300 256 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_139 igs trnV|rps12 trnV-rps12 137931 139852 0 1922 IRa 0.004386 20 26 300 300 no 1.000000 5 1.000000 0.004416 0.993236 62.600000 rps12_part2 gene rps12 rps12 139853 140647 1 795 IRa 0.001006 2 0 23 260 no 0.400000 3 0.666667 0.001006 1.000000 35.000000 IGS_140 igs rps12|rps7 rps12-rps7 140648 140700 0 53 IRa 0.000000 0 0 228 207 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 140701 141168 1 468 IRa 0.002137 2 0 281 76 no 0.200000 3 0.333333 0.002137 1.000000 33.200000 IGS_141 igs rps7|ndhB rps7-ndhB 141169 141480 0 312 IRa 0.002564 2 0 55 248 no 0.400000 3 0.666667 0.002564 1.000000 32.600000 ndhB gene ndhB ndhB 141481 143704 1 2224 IRa 0.001529 8 0 24 64 no 1.000000 5 1.000000 0.001529 1.000000 45.200000 IGS_142 igs ndhB|trnL ndhB-trnL 143705 144280 0 576 IRa 0.004174 6 1 216 139 no 1.000000 5 1.000000 0.004174 0.998264 57.000000 IGS_143 igs trnL|ycf2 trnL-ycf2 144364 145225 0 862 IRa 0.003944 8 0 87 18 no 0.600000 4 0.750000 0.003944 1.000000 40.500000 ycf2 gene ycf2 ycf2 145226 152101 -1 6876 IRa 0.002749 44 24 93 300 no 1.000000 5 1.000000 0.002753 1.000000 46.900000 IGS_144 igs ycf2|trnM ycf2-trnM 152102 152189 0 88 IRa 0.000000 0 0 116 253 no 0.000000 1 0.000000 0.000000 1.000000 27.400000 trnM tRNA trnM trnM 152190 152264 1 75 IRa 0.000000 0 0 204 178 no 0.000000 1 0.000000 0.000000 1.000000 32.100000 IGS_145 igs trnM|rpl23 trnM-rpl23 152265 152431 0 167 IRa 0.000000 0 0 279 11 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 rpl23 gene rpl23 rpl23 152432 152713 1 282 IRa 0.004965 3 0 300 111 no 0.600000 4 0.750000 0.004965 1.000000 41.900000 IGS_146 igs rpl23|rpl2 rpl23-rpl2 152714 152731 0 18 IRa 0.000000 0 0 76 93 no 0.000000 1 0.000000 NA 1.000000 24.400000 rpl2 gene rpl2 rpl2 152732 154246 1 1515 IRa 0.002389 9 8 94 149 no 0.600000 4 0.750000 0.002389 0.994719 45.500000 IGS_147 igs rpl2|trnH rpl2-trnH 154247 2 0 157 IRa 0.002548 1 0 300 97 no 0.200000 2 0.500000 0.002548 1.000000 31.700000