Hotspot

ycf3-trnS-UCC

LSC · 43408-44489 · 1082 bp

Back to Malcolmia

Pi 0.00185

MarkerSeek score 59.80

Primer available yes

Label ycf3-trnS-UCC

Feature Metadata

label_name: ycf3-trnS-UCC
feature_type: igs
region: LSC
length_bp: 1082
variable_sites: 2
pi: 0.00185
unique_haplotype_count: 2
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 59.80

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
ycf3-trnS-UCC_p1	CCTTCAGATTGAGCCGACAT	ACGGAAAGAGAGGGATTCGA	50.0	50.0	57.7	58.2	1190 bp	1.0	76.3
ycf3-trnS-UCC_p2	TTCCTTCAGATTGAGCCGAC	ACGGAAAGAGAGGGATTCGA	50.0	50.0	57.6	58.2	1192 bp	1.0	75.8
ycf3-trnS-UCC_p3	GGGGTCAATTTCTAGTCGCA	ACGGAAAGAGAGGGATTCGA	50.0	50.0	57.6	58.2	1248 bp	1.0	75.7
ycf3-trnS-UCC_p4	CCTTCAGATTGAGCCGACAT	CAATGTTACGCCTTCAACCG	50.0	50.0	57.7	57.8	1137 bp	1.0	75.6
ycf3-trnS-UCC_p5	TTCCTTCAGATTGAGCCGAC	CAATGTTACGCCTTCAACCG	50.0	50.0	57.6	57.8	1139 bp	1.0	75.1