primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score trnH-GUG-psbA_p1 trnH-GUG-psbA 1 GATCCACTTGGCTACATCCG TCGAAGCTCCAACAAATG 20 18 55.0 44.4 58.1 52.9 0.0 0.0 7.203208 83 402 273-386 1.000000 52.0 trnH-GUG-psbA_p2 trnH-GUG-psbA 2 CAATCCACTGCCTTGATCCA TCGAAGCTCCAACAAATG 20 18 50.0 44.4 57.9 52.9 0.0 0.0 7.207570 83 402 287-400 1.000000 52.0 trnH-GUG-psbA_p3 trnH-GUG-psbA 3 AATCCACTGCCTTGATCCAC TCGAAGCTCCAACAAATG 20 18 50.0 44.4 57.9 52.9 0.0 0.0 7.209077 83 402 286-399 1.000000 52.0 trnH-GUG-psbA_p4 trnH-GUG-psbA 4 ACAATCCACTGCCTTGATCC TCGAAGCTCCAACAAATG 20 18 50.0 44.4 57.9 52.9 0.0 0.0 7.209077 83 402 288-401 1.000000 52.0 trnH-GUG-psbA_p5 trnH-GUG-psbA 5 CGCATGGTGGATTCACAATC TCGAAGCTCCAACAAATG 20 18 50.0 44.4 57.5 52.9 6.4 0.0 7.554512 83 402 302-415 1.000000 52.0 rps16-trnQ-UUG_p1 rps16-trnQ-UUG 1 AACGATGTCGAGACAAGAGC TGAAGCCACCCAATCACAAA 20 20 50.0 45.0 58.0 57.9 10.1 0.0 0.095197 6213 7301 1266-1584 1.000000 90.2 rps16-trnQ-UUG_p2 rps16-trnQ-UUG 2 AACGATGTCGAGACAAGAGC TTGAAGCCACCCAATCACAA 20 20 50.0 45.0 58.0 57.9 10.1 0.0 0.095197 6213 7301 1267-1585 1.000000 90.2 rps16-trnQ-UUG_p3 rps16-trnQ-UUG 3 AACGATGTCGAGACAAGAGC AGCAGCTTGCCAAACAAAAG 20 20 50.0 45.0 58.0 58.1 10.1 0.0 0.071996 6213 7301 1540-1856 1.000000 89.6 rps16-trnQ-UUG_p4 rps16-trnQ-UUG 4 AACGATGTCGAGACAAGAGC CTTACAGCAGCTTGCCAAAC 20 20 50.0 50.0 58.0 57.9 10.1 0.0 0.072122 6213 7301 1545-1861 1.000000 89.6 rps16-trnQ-UUG_p5 rps16-trnQ-UUG 5 AACGATGTCGAGACAAGAGC GAGGTTCGAATCCTTCCGTC 20 20 50.0 55.0 58.0 58.1 10.1 16.9 0.092129 6213 7301 975-1293 0.791667 81.3 trnS-GCU-trnG-UCC_p1 trnS-GCU-trnG-UCC 1 CAATCCGACGCTTTAGTCCA ACGAATCACACTTTTACCACT 20 21 50.0 38.1 58.0 55.5 0.0 0.0 3.540425 8618 9431 855-896 1.000000 59.7 trnS-GCU-trnG-UCC_p2 trnS-GCU-trnG-UCC 2 AATCCGACGCTTTAGTCCAC ACGAATCACACTTTTACCACT 20 21 50.0 38.1 58.0 55.5 0.0 0.0 3.541813 8618 9431 854-895 1.000000 59.7 trnS-GCU-trnG-UCC_p3 trnS-GCU-trnG-UCC 3 CAATCCGACGCTTTAGTCCA AGAACGAATCACACTTTTACCAC 20 23 50.0 39.1 58.0 57.3 0.0 0.0 3.673141 8618 9431 858-899 1.000000 58.6 trnS-GCU-trnG-UCC_p4 trnS-GCU-trnG-UCC 4 CAATCCGACGCTTTAGTCCA GAACGAATCACACTTTTACCACT 20 23 50.0 39.1 58.0 57.3 0.0 0.0 3.673141 8618 9431 857-898 1.000000 58.6 trnS-GCU-trnG-UCC_p5 trnS-GCU-trnG-UCC 5 AATCCGACGCTTTAGTCCAC GAACGAATCACACTTTTACCACT 20 23 50.0 39.1 58.0 57.3 0.0 0.0 3.674529 8618 9431 856-897 1.000000 58.6 trnG-UCC-trnR-UCU_p1 trnG-UCC-trnR-UCU 1 TAACGATGCGGGTTCGATTC TGTCCTATCCATTAGACAATG 20 21 50.0 38.1 58.4 52.4 0.0 0.0 7.005652 10207 10415 256-267 1.000000 49.8 trnG-UCC-trnR-UCU_p2 trnG-UCC-trnR-UCU 2 CTAACGATGCGGGTTCGATT TGTCCTATCCATTAGACAATG 20 21 50.0 38.1 58.4 52.4 0.0 0.0 7.001259 10207 10415 257-268 1.000000 49.7 trnG-UCC-trnR-UCU_p3 trnG-UCC-trnR-UCU 3 AGCCTTCCAAGCTAACGATG TGTCCTATCCATTAGACAATG 20 21 50.0 38.1 58.0 52.4 0.0 0.0 6.598602 10207 10415 268-279 1.000000 49.5 trnG-UCC-trnR-UCU_p4 trnG-UCC-trnR-UCU 4 CCTAGCCTTCCAAGCTAACG TGTCCTATCCATTAGACAATG 20 21 55.0 38.1 58.1 52.4 0.0 0.0 6.627438 10207 10415 271-282 1.000000 49.5 trnG-UCC-trnR-UCU_p5 trnG-UCC-trnR-UCU 5 CCCTAGCCTTCCAAGCTAAC TGTCCTATCCATTAGACAATG 20 21 55.0 38.1 57.7 52.4 0.0 0.0 6.902452 10207 10415 272-283 1.000000 49.4 rpoB-trnC-GCA_p1 rpoB-trnC-GCA 1 ATTGCCTGATTTCCATCCCC CCGGATTTGAACTGGGGAAA 20 20 50.0 50.0 57.9 58.1 0.0 0.0 0.174726 27365 28503 1162-1229 0.958333 85.3 rpoB-trnC-GCA_p2 rpoB-trnC-GCA 2 ATTGCCTGATTTCCATCCCC AAAAGGATTTGCAGTCCCCC 20 20 50.0 50.0 57.9 58.4 0.0 14.6 0.448089 27365 28503 1144-1211 0.958333 83.2 rpoB-trnC-GCA_p3 rpoB-trnC-GCA 3 ATTGCCTGATTTCCATCCCC TTGTTTGATCAGGCGACACC 20 20 50.0 50.0 57.9 58.8 0.0 0.0 0.857777 27365 28503 1181-1248 0.958333 79.7 rpoB-trnC-GCA_p4 rpoB-trnC-GCA 4 ATTGCCTGATTTCCATCCCC GACACCCGGATTTGAACTGG 20 20 50.0 55.0 57.9 58.8 0.0 0.7 0.927329 27365 28503 1167-1234 0.958333 79.2 rpoB-trnC-GCA_p5 rpoB-trnC-GCA 5 CTGATTTCCATCCCCGAGC CCGGATTTGAACTGGGGAAA 19 20 57.9 50.0 58.0 58.1 0.0 0.0 1.094688 27365 28503 1157-1224 0.875000 74.3 trnE-UUC-trnT-GGU_p1 trnE-UUC-trnT-GGU 1 TTTCGTAGTACCCTACCCCC GAACCGATGACTTACGCCTT 20 20 55.0 50.0 57.8 58.0 0.0 0.0 0.165150 31533 32228 753-948 1.000000 86.2 trnE-UUC-trnT-GGU_p2 trnE-UUC-trnT-GGU 2 TTTCGTAGTACCCTACCCCC CCATGGCGTTACTCTACCAC 20 20 55.0 55.0 57.8 58.1 0.0 0.0 0.223247 31533 32228 732-927 1.000000 85.9 trnE-UUC-trnT-GGU_p3 trnE-UUC-trnT-GGU 3 TTTCGTAGTACCCTACCCCC TGGCGTTACTCTACCACTGA 20 20 55.0 50.0 57.8 58.1 0.0 0.0 0.245401 31533 32228 729-924 1.000000 85.7 trnE-UUC-trnT-GGU_p4 trnE-UUC-trnT-GGU 4 TTTCGTAGTACCCTACCCCC CCGATGACTTACGCCTTACC 20 20 55.0 55.0 57.8 58.2 0.0 0.0 0.310083 31533 32228 750-945 1.000000 85.1 trnE-UUC-trnT-GGU_p5 trnE-UUC-trnT-GGU 5 TTTCGTAGTACCCTACCCCC GCGTTACTCTACCACTGAGC 20 20 55.0 55.0 57.8 58.1 0.0 0.0 0.248492 31533 32228 811-811 0.041667 39.7 trnT-GGU-psbD_p1 trnT-GGU-psbD 1 GTGGTAGAGTAACGCCATGG GGACCAGCCTACAAAAACGA 20 20 55.0 50.0 58.1 58.1 7.6 0.0 0.177181 32301 33636 1490-1533 1.000000 83.0 trnT-GGU-psbD_p2 trnT-GGU-psbD 2 TCAGTGGTAGAGTAACGCCA GGACCAGCCTACAAAAACGA 20 20 50.0 50.0 58.1 58.1 0.0 0.0 0.199336 32301 33636 1493-1536 1.000000 82.8 trnT-GGU-psbD_p3 trnT-GGU-psbD 3 GCTCAGTGGTAGAGTAACGC GGACCAGCCTACAAAAACGA 20 20 55.0 50.0 58.1 58.1 0.0 0.0 0.202426 32301 33636 1495-1538 1.000000 82.8 trnT-GGU-psbD_p4 trnT-GGU-psbD 4 GTGGTAGAGTAACGCCATGG ACAAAAACGAAACGGTCCCT 20 20 55.0 45.0 58.1 58.2 7.6 0.0 0.310137 32301 33636 1480-1523 1.000000 82.0 trnT-GGU-psbD_p5 trnT-GGU-psbD 5 AAGCCCTTTTAGCTCAGTGG GGACCAGCCTACAAAAACGA 20 20 50.0 50.0 57.8 58.1 0.0 0.0 0.319690 32301 33636 1506-1549 1.000000 81.9 ndhC-trnV-UAC_p1 ndhC-trnV-UAC 1 TGCCAAAATGGGAATAAGACTTG GCACGTTGGGTCTTTGAAAC 23 20 39.1 50.0 57.6 58.2 0.0 0.0 3.569345 51524 52584 1142-1241 1.000000 58.8 ndhC-trnV-UAC_p2 ndhC-trnV-UAC 2 TGCCAAAATGGGAATAAGACTTG AGAAGGTCTACGGTTCGAGT 23 20 39.1 50.0 57.6 57.8 0.0 0.0 3.601749 51524 52584 1078-1177 1.000000 58.7 ndhC-trnV-UAC_p3 ndhC-trnV-UAC 3 TGCCAAAATGGGAATAAGACTTG AATGCACGTTGGGTCTTTGA 23 20 39.1 45.0 57.6 58.3 0.0 0.0 3.718111 51524 52584 1145-1244 1.000000 57.6 ndhC-trnV-UAC_p4 ndhC-trnV-UAC 4 TGCCAAAATGGGAATAAGACTTG ATGCACGTTGGGTCTTTGAA 23 20 39.1 45.0 57.6 58.3 0.0 0.0 3.718111 51524 52584 1144-1243 1.000000 57.6 ndhC-trnV-UAC_p5 ndhC-trnV-UAC 5 TGCCAAAATGGGAATAAGACT GCACGTTGGGTCTTTGAAAC 21 20 38.1 50.0 55.4 58.2 0.0 0.0 3.729874 51524 52584 1142-1241 1.000000 57.6 ycf4-cemA_p1 ycf4-cemA 1 CGTTGACCCGTACTGATGAG GAGAGAGAAATCCAACAGGACA 20 22 55.0 45.5 58.1 57.5 0.0 0.0 2.634214 61739 62599 999-1037 1.000000 65.4 ycf4-cemA_p2 ycf4-cemA 2 CGTTGACCCGTACTGATGAG TGAGAGAGAAATCCAACAGGAC 20 22 55.0 45.5 58.1 57.5 0.0 0.0 2.634214 61739 62599 1000-1038 1.000000 65.4 ycf4-cemA_p3 ycf4-cemA 3 GAACAAAAAGCCGCCGAATT GAGAGAGAAATCCAACAGGACA 20 22 45.0 45.5 58.2 57.5 0.0 0.0 2.765255 61739 62599 958-996 1.000000 64.6 ycf4-cemA_p4 ycf4-cemA 4 GAACAAAAAGCCGCCGAATT TGAGAGAGAAATCCAACAGGAC 20 22 45.0 45.5 58.2 57.5 0.0 0.0 2.765255 61739 62599 959-997 1.000000 64.6 ycf4-cemA_p5 ycf4-cemA 5 CGTTGACCCGTACTGATGAG TCCAACAGGACAAAAACACT 20 20 55.0 40.0 58.1 55.3 0.0 0.0 2.785741 61739 62599 989-1027 1.000000 64.2 rpl20-rps12_p1 rpl20-rps12 1 CTTGAATGAGCCCCTCGAAA AAATGTCACGAAATCCCCCG 20 20 50.0 50.0 57.9 58.5 0.0 0.0 0.654410 70149 70972 976-982 1.000000 77.8 rpl20-rps12_p2 rpl20-rps12 2 TTGAATGAGCCCCTCGAAAG AAATGTCACGAAATCCCCCG 20 20 50.0 50.0 57.9 58.5 0.0 0.0 0.654410 70149 70972 975-981 1.000000 77.8 rpl20-rps12_p3 rpl20-rps12 3 TCCGAGCTATATATCCGCGT AAATGTCACGAAATCCCCCG 20 20 50.0 50.0 58.0 58.5 4.9 0.0 0.574654 70149 70972 921-927 0.958333 76.8 rpl20-rps12_p4 rpl20-rps12 4 TTGAATGAGCCCCTCGAAAG CAGCGTCGAGGAACATGTAC 20 20 50.0 55.0 57.9 58.7 0.0 9.8 0.844694 70149 70972 938-944 1.000000 76.4 rpl20-rps12_p5 rpl20-rps12 5 TCCGAGCTATATATCCGCGT CAGCGTCGAGGAACATGTAC 20 20 50.0 55.0 58.0 58.7 4.9 9.8 0.764938 70149 70972 884-890 0.958333 75.4 rpl32-trnL-UAG_p1 rpl32-trnL-UAG 1 GAAGGGGTATTGTGCATCGT TTTAGGAGATGACATGCCGC 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.084828 113387 114253 781-1082 1.000000 88.7 rpl32-trnL-UAG_p2 rpl32-trnL-UAG 2 GAAGGGGTATTGTGCATCGT TCCTAAGAGCAGCGTGTCTA 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.162664 113387 114253 726-1027 1.000000 88.3 rpl32-trnL-UAG_p3 rpl32-trnL-UAG 3 GAAGGGGTATTGTGCATCGT GAAGTAGCAAAGCCTTGGGT 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.127329 113387 114253 1197-1498 1.000000 87.7 rpl32-trnL-UAG_p4 rpl32-trnL-UAG 4 GAAGGGGTATTGTGCATCGT TGAAGTAGCAAAGCCTTGGG 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.128687 113387 114253 1198-1499 1.000000 87.7 rpl32-trnL-UAG_p5 rpl32-trnL-UAG 5 GAAGGGGTATTGTGCATCGT AAAAATAGCACTTGGGCCGA 20 20 50.0 45.0 58.0 58.1 0.0 0.0 0.120515 113387 114253 1177-1478 0.958333 85.7 ccsA-ndhD_p1 ccsA-ndhD 1 CAATTCAGCAATTGTGGCGT TCAGTTGAAAAGGTTGAAGT 20 20 45.0 35.0 57.9 52.8 7.4 0.0 5.230955 115383 115623 405-429 1.000000 49.7 ccsA-ndhD_p2 ccsA-ndhD 2 CAATTCAGCAATTGTGGCGT TCAGTTGAAAAGGTTGAAGTT 20 21 45.0 33.3 57.9 53.8 7.4 0.0 5.304478 115383 115623 405-429 1.000000 49.7 ccsA-ndhD_p3 ccsA-ndhD 3 CAATTCAGCAATTGTGGCGT TCACTATCAGTTGAAAAGGTTGA 20 23 45.0 34.8 57.9 55.8 7.4 0.0 5.268322 115383 115623 411-435 1.000000 49.6 ccsA-ndhD_p4 ccsA-ndhD 4 CAATTCAGCAATTGTGGCGT CACTATCAGTTGAAAAGGTTGAAGT 20 25 45.0 36.0 57.9 57.7 7.4 0.0 5.333210 115383 115623 410-434 1.000000 49.6 ccsA-ndhD_p5 ccsA-ndhD 5 TTCAGCAATTGTGGCGTCTA TCAGTTGAAAAGGTTGAAGT 20 20 45.0 35.0 57.8 52.8 7.4 0.0 5.339512 115383 115623 402-426 1.000000 49.6 ndhD-psaC_p1 ndhD-psaC 1 TGATTCGTGGTAAAGACAAGA CCGACCGATTTCTTGAGTGT 21 20 38.1 50.0 54.9 57.9 0.0 0.0 4.169881 117145 117244 193-198 1.000000 54.4 ndhD-psaC_p2 ndhD-psaC 2 TGATTCGTGGTAAAGACAAGA AGCGATGTGAATCTGCATGT 21 20 38.1 45.0 54.9 58.0 0.0 0.0 4.123699 117145 117244 213-218 1.000000 54.0 ndhD-psaC_p3 ndhD-psaC 3 TGATTCGTGGTAAAGACAAGA TGTGAATCTGCATGTCCGAC 21 20 38.1 50.0 54.9 58.3 0.0 0.0 4.363955 117145 117244 208-213 1.000000 52.3 ndhD-psaC_p4 ndhD-psaC 4 GGAAAATGATTCGTGGTAAAGACA CCGACCGATTTCTTGAGTGT 24 20 37.5 50.0 57.8 57.9 0.0 0.0 4.329321 117145 117244 199-204 0.958333 51.2 ndhD-psaC_p5 ndhD-psaC 5 GGAAAATGATTCGTGGTAAAGACA AGCGATGTGAATCTGCATGT 24 20 37.5 45.0 57.8 58.0 0.0 0.0 4.283139 117145 117244 219-224 0.958333 50.9 rps15-ycf1_p1 rps15-ycf1 1 CAGCAGTCGTTGACGTTTTC AACAGCAAACAAGTTTCGGC 20 20 50.0 45.0 58.0 58.1 3.2 0.0 0.083945 123407 123787 771-786 1.000000 84.0 rps15-ycf1_p2 rps15-ycf1 2 AGTCGTTGACGTTTTCCCAA AACAGCAAACAAGTTTCGGC 20 20 45.0 45.0 58.0 58.1 3.2 0.0 0.105760 123407 123787 767-782 1.000000 83.8 rps15-ycf1_p3 rps15-ycf1 3 TCCCAACGCGTTACATAAGG AACAGCAAACAAGTTTCGGC 20 20 50.0 45.0 58.0 58.1 26.1 0.0 0.091693 123407 123787 1162-1177 1.000000 83.6 rps15-ycf1_p4 rps15-ycf1 4 AACACCATGCATTGATGGGT AACAGCAAACAAGTTTCGGC 20 20 45.0 45.0 58.1 58.1 8.9 0.0 0.137379 123407 123787 1025-1040 1.000000 83.6 rps15-ycf1_p5 rps15-ycf1 5 CAGCAGTCGTTGACGTTTTC GCACAAAGTTCTGCCTGTTC 20 20 50.0 50.0 58.0 57.9 3.2 0.0 0.130650 123407 123787 910-916 0.791667 73.3 ycf1_p1 ycf1 1 ATCTCTGTTCGTGCGTTCTC AAATTCGCGCAAGAAAAGGG 20 20 50.0 45.0 58.0 57.9 0.0 8.7 0.080601 127193 127312 418-418 0.416667 60.6 ycf1_p2 ycf1 2 ATCTCTGTTCGTGCGTTCTC GTATCCCCCGACCTCTACAA 20 20 50.0 55.0 58.0 57.9 0.0 0.0 0.093715 127193 127312 1016-1031 0.416667 58.6 ycf1_p3 ycf1 3 CGGGGTGAACCAAAAAGAGA AAATTCGCGCAAGAAAAGGG 20 20 50.0 45.0 58.0 57.9 1.2 8.7 0.088914 127193 127312 829-835 0.333333 54.0 ycf1_p4 ycf1 4 TCGGGGTGAACCAAAAAGAG AAATTCGCGCAAGAAAAGGG 20 20 50.0 45.0 58.0 57.9 1.2 8.7 0.088914 127193 127312 830-836 0.333333 54.0 ycf1_p5 ycf1 5 CGGGGTGAACCAAAAAGAGA GTATCCCCCGACCTCTACAA 20 20 50.0 55.0 58.0 57.9 1.2 0.0 0.102028 127193 127312 1433-1442 0.333333 53.4