feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 2 76 -1 75 LSC 0.000000 0 0 25 39 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_001 igs trnH|psbA trnH-psbA 77 447 0 371 LSC 0.014692 8 8 100 300 yes 1.000000 3 1.000000 0.014692 0.978437 57.800000 psbA gene psbA psbA 448 1509 -1 1062 LSC 0.000000 0 0 155 55 no 0.000000 1 0.000000 0.000000 1.000000 29.100000 IGS_002 igs psbA|trnK psbA-trnK 1510 1775 0 266 LSC 0.007519 3 0 300 55 no 0.333333 2 0.500000 0.007519 1.000000 33.900000 trnK_part2 tRNA trnK trnK 1776 1810 -1 35 LSC 0.000000 0 0 99 20 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 matK gene matK matK 2094 3611 -1 1518 LSC 0.003953 9 0 262 300 no 0.333333 2 0.500000 0.003953 1.000000 48.700000 IGS_005 igs matK|trnK matK-trnK 3612 4340 0 729 LSC 0.000914 1 0 66 116 no 0.333333 2 0.500000 0.000914 1.000000 36.800000 trnK_part1 tRNA trnK trnK 4341 4377 -1 37 LSC 0.000000 0 0 107 79 no 0.000000 1 0.000000 0.000000 1.000000 24.700000 IGS_006 igs trnK|rps16 trnK-rps16 4378 5299 0 922 LSC 0.001452 2 4 144 300 no 0.333333 2 0.500000 0.001452 0.995662 43.400000 rps16 gene rps16 rps16 5300 6430 -1 1131 LSC 0.003537 6 1 272 13 no 1.000000 3 1.000000 0.003538 1.000000 47.100000 IGS_007 igs rps16|trnQ rps16-trnQ 6431 7841 0 1411 LSC 0.002865 6 16 92 81 yes 1.000000 3 1.000000 0.002866 0.989369 52.700000 trnQ tRNA trnQ trnQ 7842 7913 -1 72 LSC 0.000000 0 0 149 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_008 igs trnQ|psbK trnQ-psbK 7914 8267 0 354 LSC 0.007533 4 0 221 300 yes 1.000000 3 1.000000 0.007533 1.000000 58.400000 psbK gene psbK psbK 8268 8453 1 186 LSC 0.000000 0 0 2 133 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_009 igs psbK|psbI psbK-psbI 8454 8842 0 389 LSC 0.001802 1 19 188 188 yes 1.000000 3 1.000000 0.001802 0.951157 59.100000 psbI gene psbI psbI 8843 8953 1 111 LSC 0.000000 0 0 255 77 no 0.000000 1 0.000000 0.000000 1.000000 24.500000 IGS_010 igs psbI|trnS psbI-trnS 8954 9102 0 149 LSC 0.004695 1 7 300 124 no 0.333333 2 0.500000 0.004695 0.953020 41.600000 trnS tRNA trnS trnS 9103 9190 -1 88 LSC 0.000000 0 0 71 36 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_011 igs trnS|trnG trnS-trnG 9191 9983 0 793 LSC 0.003384 4 5 159 175 yes 1.000000 3 1.000000 0.003384 0.993695 58.400000 trnG_part1 tRNA trnG trnG 9984 10006 1 23 LSC 0.000000 0 0 94 152 no 0.000000 1 0.000000 0.000000 1.000000 25.800000 trnG_part2 tRNA trnG trnG 10725 10773 1 49 LSC 0.000000 0 0 300 38 no 0.000000 1 0.000000 0.000000 1.000000 21.600000 IGS_014 igs trnG|trnR trnG-trnR 10774 10928 0 155 LSC 0.004301 1 0 300 300 no 0.333333 2 0.500000 0.004301 1.000000 42.700000 trnR tRNA trnR trnR 10929 11000 1 72 LSC 0.000000 0 0 116 300 no 0.000000 1 0.000000 0.000000 1.000000 27.400000 IGS_015 igs trnR|atpA trnR-atpA 11001 11269 0 269 LSC 0.000000 0 0 188 163 no 0.000000 1 0.000000 0.000000 1.000000 31.000000 atpA gene atpA atpA 11270 12787 -1 1518 LSC 0.000878 2 0 300 22 no 0.333333 2 0.500000 0.000878 1.000000 33.400000 IGS_016 igs atpA|atpF atpA-atpF 12788 12855 0 68 LSC 0.009950 1 1 300 30 no 0.333333 2 0.500000 0.009950 0.985294 34.900000 atpF gene atpF atpF 12856 14172 -1 1317 LSC 0.003040 6 1 45 145 no 0.333333 2 0.500000 0.003040 0.999241 36.600000 IGS_017 igs atpF|atpH atpF-atpH 14173 14645 0 473 LSC 0.005710 4 6 24 300 no 1.000000 3 1.000000 0.005710 0.987315 47.700000 atpH gene atpH atpH 14646 14891 -1 246 LSC 0.000000 0 0 63 300 no 0.000000 1 0.000000 0.000000 1.000000 23.500000 IGS_018 igs atpH|atpI atpH-atpI 14892 16093 0 1202 LSC 0.002237 4 10 300 300 no 0.333333 2 0.500000 0.002237 0.991681 48.400000 atpI gene atpI atpI 16094 16837 -1 744 LSC 0.000000 0 0 38 300 no 0.000000 1 0.000000 0.000000 1.000000 27.800000 IGS_019 igs atpI|rps2 atpI-rps2 16838 17050 0 213 LSC 0.000000 0 0 300 262 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps2 gene rps2 rps2 17051 17761 -1 711 LSC 0.000938 1 0 300 295 no 0.333333 2 0.500000 0.000938 1.000000 46.800000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 17762 17955 0 194 LSC 0.000000 0 0 300 101 no 0.000000 1 0.000000 0.000000 1.000000 26.300000 rpoC2 gene rpoC2 rpoC2 17956 22140 -1 4185 LSC 0.001274 8 0 300 38 no 0.333333 2 0.500000 0.001274 1.000000 29.900000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 22141 22318 0 178 LSC 0.007491 2 0 132 86 no 0.333333 2 0.500000 0.007491 1.000000 36.200000 rpoC1 gene rpoC1 rpoC1 22319 25130 -1 2812 LSC 0.002259 9 9 55 300 no 1.000000 3 1.000000 0.002259 0.996799 46.900000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 25131 25156 0 26 LSC 0.000000 0 0 155 300 no 0.000000 1 0.000000 0.000000 1.000000 30.400000 rpoB gene rpoB rpoB 25157 28369 -1 3213 LSC 0.000415 2 0 181 300 no 0.333333 2 0.500000 0.000415 1.000000 41.600000 IGS_023 igs rpoB|trnC rpoB-trnC 28370 29600 0 1231 LSC 0.001641 3 12 300 107 yes 0.333333 2 0.500000 0.001641 0.990252 41.200000 trnC tRNA trnC trnC 29601 29671 1 71 LSC 0.000000 0 0 16 36 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_024 igs trnC|petN trnC-petN 29672 30383 0 712 LSC 0.006554 7 0 87 111 no 0.333333 2 0.500000 0.006554 1.000000 42.000000 petN gene petN petN 30384 30473 1 90 LSC 0.000000 0 0 99 21 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 IGS_025 igs petN|psbM petN-psbM 30474 31727 0 1254 LSC 0.002658 5 0 189 230 yes 1.000000 3 1.000000 0.002658 1.000000 59.600000 psbM gene psbM psbM 31728 31832 -1 105 LSC 0.000000 0 0 300 125 no 0.000000 1 0.000000 0.000000 1.000000 28.100000 IGS_026 igs psbM|trnD psbM-trnD 31833 32395 0 563 LSC 0.003697 3 22 300 300 no 0.333333 2 0.500000 0.003697 0.960924 51.400000 trnD tRNA trnD trnD 32396 32469 -1 74 LSC 0.000000 0 0 90 300 no 0.000000 1 0.000000 0.000000 1.000000 25.500000 IGS_027 igs trnD|trnY trnD-trnY 32470 32906 0 437 LSC 0.000000 0 0 164 140 no 0.000000 1 0.000000 0.000000 1.000000 32.100000 trnY tRNA trnY trnY 32907 32990 -1 84 LSC 0.000000 0 0 300 56 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 IGS_028 igs trnY|trnE trnY-trnE 32991 33053 0 63 LSC 0.010582 1 0 300 300 no 0.333333 2 0.500000 0.010582 1.000000 46.700000 trnE tRNA trnE trnE 33054 33126 -1 73 LSC 0.000000 0 0 6 240 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_029 igs trnE|trnT trnE-trnT 33127 33902 0 776 LSC 0.002584 3 2 79 286 no 0.333333 2 0.500000 0.002584 0.997423 39.100000 trnT tRNA trnT trnT 33903 33974 1 72 LSC 0.000000 0 0 68 214 no 0.000000 1 0.000000 0.000000 1.000000 23.800000 IGS_030 igs trnT|psbD trnT-psbD 33975 35199 0 1225 LSC 0.000545 1 1 140 300 no 0.333333 2 0.500000 0.000545 0.999184 42.200000 psbD gene psbD psbD 35200 36261 1 1062 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 psbC gene psbC psbC 36209 37630 1 1422 LSC 0.000469 1 0 300 300 no 0.333333 2 0.500000 0.000469 1.000000 46.500000 IGS_032 igs psbC|trnS psbC-trnS 37631 37871 0 241 LSC 0.000000 0 0 300 81 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 trnS tRNA trnS trnS 37872 37964 -1 93 LSC 0.007168 1 0 300 300 no 0.333333 2 0.500000 0.007168 1.000000 44.600000 IGS_033 igs trnS|psbZ trnS-psbZ 37965 38315 0 351 LSC 0.000000 0 0 11 227 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 psbZ gene psbZ psbZ 38316 38504 1 189 LSC 0.000000 0 0 300 38 no 0.000000 1 0.000000 0.000000 1.000000 21.600000 IGS_034 igs psbZ|trnG psbZ-trnG 38505 39060 0 556 LSC 0.003597 3 0 300 160 no 0.333333 2 0.500000 0.003597 1.000000 44.600000 IGS_035 igs trnG|trnM trnG-trnM 39132 39282 0 151 LSC 0.004415 1 0 300 106 no 0.333333 2 0.500000 0.004415 1.000000 35.800000 trnM tRNA trnM trnM 39283 39356 -1 74 LSC 0.000000 0 0 61 32 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_036 igs trnM|rps14 trnM-rps14 39357 39518 0 162 LSC 0.008230 2 0 135 300 yes 1.000000 3 1.000000 0.008230 1.000000 52.900000 rps14 gene rps14 rps14 39519 39821 -1 303 LSC 0.000000 0 0 19 300 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_037 igs rps14|psaB rps14-psaB 39822 39964 0 143 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaB gene psaB psaB 39965 42169 -1 2205 LSC 0.000907 3 0 300 300 no 0.333333 2 0.500000 0.000907 1.000000 45.400000 IGS_038 igs psaB|psaA psaB-psaA 42170 42194 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 42195 44447 -1 2253 LSC 0.000888 3 0 300 235 no 0.333333 2 0.500000 0.000888 1.000000 45.200000 IGS_039 igs psaA|ycf3 psaA-ycf3 44448 45111 0 664 LSC 0.006033 6 1 300 244 yes 0.333333 2 0.500000 0.006033 0.998494 50.200000 ycf3 gene ycf3 ycf3 45112 47121 -1 2010 LSC 0.000997 3 4 56 270 no 0.333333 2 0.500000 0.000997 0.998010 35.200000 IGS_040 igs ycf3|trnS ycf3-trnS 47122 48007 0 886 LSC 0.001515 2 6 231 275 no 0.333333 2 0.500000 0.001515 0.993228 47.800000 trnS tRNA trnS trnS 48008 48094 1 87 LSC 0.000000 0 0 145 188 no 0.000000 1 0.000000 0.000000 1.000000 29.600000 IGS_041 igs trnS|rps4 trnS-rps4 48095 48394 0 300 LSC 0.004535 2 6 232 52 no 0.333333 2 0.500000 0.004535 0.980000 33.600000 rps4 gene rps4 rps4 48395 49000 -1 606 LSC 0.001100 1 0 83 115 no 0.333333 2 0.500000 0.001100 1.000000 38.200000 IGS_042 igs rps4|trnT rps4-trnT 49001 49351 0 351 LSC 0.005698 3 0 300 239 no 0.333333 2 0.500000 0.005698 1.000000 44.700000 trnT tRNA trnT trnT 49352 49424 -1 73 LSC 0.000000 0 0 175 166 no 0.000000 1 0.000000 0.000000 1.000000 31.200000 IGS_043 igs trnT|trnL trnT-trnL 49425 50399 0 975 LSC 0.005983 7 195 248 300 yes 0.333333 2 0.500000 0.005983 0.800000 49.400000 trnL_part1 tRNA trnL trnL 50400 50434 1 35 LSC 0.000000 0 0 96 300 no 0.000000 1 0.000000 0.000000 1.000000 25.900000 trnL_part2 tRNA trnL trnL 50958 51007 1 50 LSC 0.000000 0 0 300 44 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 IGS_046 igs trnL|trnF trnL-trnF 51008 51390 0 383 LSC 0.007055 4 5 300 160 no 0.333333 2 0.500000 0.007055 0.986945 44.400000 trnF tRNA trnF trnF 51391 51463 1 73 LSC 0.000000 0 0 4 87 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_047 igs trnF|ndhJ trnF-ndhJ 51464 52171 0 708 LSC 0.000948 1 5 77 300 no 0.333333 2 0.500000 0.000948 0.992938 38.300000 ndhJ gene ndhJ ndhJ 52172 52648 -1 477 LSC 0.000000 0 0 300 8 no 0.000000 1 0.000000 0.000000 1.000000 23.000000 IGS_048 igs ndhJ|ndhK ndhJ-ndhK 52649 52761 0 113 LSC 0.005900 1 0 300 255 no 0.333333 2 0.500000 0.005900 1.000000 43.800000 ndhK gene ndhK ndhK 52762 53445 -1 684 LSC 0.000975 1 0 104 125 no 0.333333 2 0.500000 0.000975 1.000000 39.700000 IGS_049 igs ndhK|ndhC ndhK-ndhC 53446 53501 0 56 LSC 0.000000 0 0 300 69 no 0.000000 1 0.000000 0.000000 1.000000 23.900000 ndhC gene ndhC ndhC 53502 53864 -1 363 LSC 0.003673 2 0 300 300 no 0.333333 2 0.500000 0.003673 1.000000 43.700000 IGS_050 igs ndhC|trnV ndhC-trnV 53865 54783 0 919 LSC 0.001451 2 0 82 300 no 1.000000 3 1.000000 0.001451 1.000000 50.800000 trnV_part2 tRNA trnV trnV 54784 54820 -1 37 LSC 0.000000 0 0 81 300 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 trnV_part1 tRNA trnV trnV 55410 55448 -1 39 LSC 0.000000 0 0 168 300 no 0.000000 1 0.000000 0.000000 1.000000 31.400000 IGS_053 igs trnV|trnM trnV-trnM 55449 55639 0 191 LSC 0.000000 0 1 207 300 no 0.333333 2 0.500000 0.000000 0.994764 40.500000 trnM tRNA trnM trnM 55640 55712 1 73 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_054 igs trnM|atpE trnM-atpE 55713 55957 0 245 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 atpE gene atpE atpE 55958 56359 -1 402 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 35.900000 atpB gene atpB atpB 56356 57852 -1 1497 LSC 0.000000 0 0 300 268 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_056 igs atpB|rbcL atpB-rbcL 57853 58662 0 810 LSC 0.000835 1 12 300 300 no 0.333333 2 0.500000 0.000835 0.985185 48.100000 rbcL gene rbcL rbcL 58663 60099 1 1437 LSC 0.002320 5 0 300 242 yes 1.000000 3 1.000000 0.002320 1.000000 60.200000 IGS_057 igs rbcL|accD rbcL-accD 60100 60666 0 567 LSC 0.002352 2 0 29 157 no 0.333333 2 0.500000 0.002352 1.000000 34.200000 accD gene accD accD 60667 62160 1 1494 LSC 0.001785 4 0 11 14 no 1.000000 3 1.000000 0.001785 1.000000 45.700000 IGS_058 igs accD|psaI accD-psaI 62161 62891 0 731 LSC 0.004649 5 14 300 300 no 0.333333 2 0.500000 0.004649 0.980848 51.000000 psaI gene psaI psaI 62892 63005 1 114 LSC 0.000000 0 0 51 252 no 0.000000 1 0.000000 0.000000 1.000000 22.600000 IGS_059 igs psaI|ycf4 psaI-ycf4 63006 63432 0 427 LSC 0.001561 1 0 165 72 no 0.333333 2 0.500000 0.001561 1.000000 34.000000 ycf4 gene ycf4 ycf4 63433 63987 1 555 LSC 0.001201 1 0 174 275 no 0.333333 2 0.500000 0.001201 1.000000 44.100000 IGS_060 igs ycf4|cemA ycf4-cemA 63988 64924 0 937 LSC 0.001426 2 2 300 107 no 0.333333 2 0.500000 0.001426 0.997866 40.400000 cemA gene cemA cemA 64925 65623 1 699 LSC 0.001907 2 0 45 300 no 0.333333 2 0.500000 0.001907 1.000000 35.800000 IGS_061 igs cemA|petA cemA-petA 65624 65845 0 222 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 petA gene petA petA 65846 66808 1 963 LSC 0.000000 0 0 300 263 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_062 igs petA|psbJ petA-psbJ 66809 67657 0 849 LSC 0.000785 1 0 300 300 no 0.333333 2 0.500000 0.000785 1.000000 46.800000 psbJ gene psbJ psbJ 67658 67780 -1 123 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_063 igs psbJ|psbL psbJ-psbL 67781 67922 0 142 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbL gene psbL psbL 67923 68039 -1 117 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_064 igs psbL|psbF psbL-psbF 68040 68061 0 22 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbF gene psbF psbF 68062 68181 -1 120 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_065 igs psbF|psbE psbF-psbE 68182 68190 0 9 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbE gene psbE psbE 68191 68442 -1 252 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_066 igs psbE|petL psbE-petL 68443 69881 0 1439 LSC 0.000927 2 0 300 289 yes 1.000000 3 1.000000 0.000927 1.000000 59.300000 petL gene petL petL 69882 69977 1 96 LSC 0.000000 0 0 300 193 no 0.000000 1 0.000000 0.000000 1.000000 33.200000 IGS_067 igs petL|petG petL-petG 69978 70144 0 167 LSC 0.000000 0 0 300 26 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 petG gene petG petG 70145 70258 1 114 LSC 0.005848 1 0 300 300 no 0.333333 2 0.500000 0.005848 1.000000 43.700000 IGS_068 igs petG|trnW petG-trnW 70259 70401 0 143 LSC 0.000000 0 0 87 300 no 0.000000 1 0.000000 0.000000 1.000000 25.300000 trnW tRNA trnW trnW 70402 70475 -1 74 LSC 0.000000 0 0 230 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_069 igs trnW|trnP trnW-trnP 70476 70664 0 189 LSC 0.000000 0 22 300 300 no 0.333333 2 0.500000 0.000000 0.883598 42.400000 trnP tRNA trnP trnP 70665 70738 -1 74 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_070 igs trnP|psaJ trnP-psaJ 70739 71087 0 349 LSC 0.001910 1 0 300 98 no 0.333333 2 0.500000 0.001910 1.000000 34.600000 psaJ gene psaJ psaJ 71088 71222 1 135 LSC 0.004938 1 0 38 126 no 0.333333 2 0.500000 0.004938 1.000000 31.000000 IGS_071 igs psaJ|rpl33 psaJ-rpl33 71223 71669 0 447 LSC 0.002983 2 0 36 300 no 0.333333 2 0.500000 0.002983 1.000000 32.700000 rpl33 gene rpl33 rpl33 71670 71870 1 201 LSC 0.000000 0 0 290 118 no 0.000000 1 0.000000 0.000000 1.000000 27.600000 IGS_072 igs rpl33|rps18 rpl33-rps18 71871 72074 0 204 LSC 0.013072 4 0 300 159 no 0.333333 2 0.500000 0.013072 1.000000 45.300000 rps18 gene rps18 rps18 72075 72380 1 306 LSC 0.002179 1 0 5 55 no 0.333333 2 0.500000 0.002179 1.000000 26.900000 IGS_073 igs rps18|rpl20 rps18-rpl20 72381 72641 0 261 LSC 0.002564 1 1 146 107 no 0.333333 2 0.500000 0.002564 0.996169 35.000000 rpl20 gene rpl20 rpl20 72642 72995 -1 354 LSC 0.001883 1 0 205 300 no 0.333333 2 0.500000 0.001883 1.000000 42.300000 IGS_074 igs rpl20|rps12 rpl20-rps12 72996 73725 0 730 LSC 0.000913 1 0 246 300 no 0.333333 2 0.500000 0.000913 1.000000 46.800000 rps12_part1 gene rps12 rps12 73726 73851 -1 126 LSC 0.000000 0 0 35 300 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_075 igs rps12|clpP1 rps12-clpP1 73852 74002 0 151 LSC 0.000000 0 0 161 284 no 0.000000 1 0.000000 0.000000 1.000000 30.800000 clpP1 gene clpP1 clpP1 74003 76080 -1 2078 LSC 0.002893 9 10 300 300 yes 1.000000 3 1.000000 0.002898 0.998075 59.900000 IGS_076 igs clpP1|psbB clpP1-psbB 76081 76517 0 437 LSC 0.001529 1 1 123 300 no 1.000000 3 1.000000 0.001529 0.997712 50.800000 psbB gene psbB psbB 76518 78044 1 1527 LSC 0.000000 0 0 64 83 yes 0.000000 1 0.000000 0.000000 1.000000 29.700000 IGS_077 igs psbB|psbT psbB-psbT 78045 78251 0 207 LSC 0.016103 5 0 300 142 no 0.333333 2 0.500000 0.016103 1.000000 45.900000 psbT gene psbT psbT 78252 78353 1 102 LSC 0.000000 0 0 82 40 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_078 igs psbT|psbN psbT-psbN 78354 78418 0 65 LSC 0.020513 2 0 184 243 yes 0.333333 2 0.500000 0.020513 1.000000 51.900000 psbN gene psbN psbN 78419 78550 -1 132 LSC 0.000000 0 0 19 111 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_079 igs psbN|psbH psbN-psbH 78551 78654 0 104 LSC 0.000000 0 0 151 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 psbH gene psbH psbH 78655 78876 1 222 LSC 0.003003 1 0 255 3 no 0.333333 2 0.500000 0.003003 1.000000 27.100000 IGS_080 igs psbH|petB psbH-petB 78877 78989 0 113 LSC 0.011799 2 0 214 300 yes 1.000000 3 1.000000 0.011799 1.000000 60.000000 petB gene petB petB 78990 80448 1 1459 LSC 0.001371 3 0 88 156 no 0.333333 2 0.500000 0.001371 1.000000 38.700000 IGS_081 igs petB|petD petB-petD 80449 80659 0 211 LSC 0.003160 1 0 300 113 no 0.333333 2 0.500000 0.003160 1.000000 35.500000 petD gene petD petD 80660 81885 1 1226 LSC 0.002177 4 1 54 52 no 1.000000 3 1.000000 0.002177 0.999184 49.100000 IGS_082 igs petD|rpoA petD-rpoA 81886 82144 0 259 LSC 0.007722 3 0 300 29 no 0.333333 2 0.500000 0.007722 1.000000 32.100000 rpoA gene rpoA rpoA 82145 83128 -1 984 LSC 0.002033 3 0 2 112 no 1.000000 3 1.000000 0.002033 1.000000 45.200000 IGS_083 igs rpoA|rps11 rpoA-rps11 83129 83192 0 64 LSC 0.000000 0 0 158 48 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 rps11 gene rps11 rps11 83193 83609 -1 417 LSC 0.001599 1 0 222 300 no 0.333333 2 0.500000 0.001599 1.000000 43.500000 IGS_084 igs rps11|rpl36 rps11-rpl36 83610 83726 0 117 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl36 gene rpl36 rpl36 83727 83840 -1 114 LSC 0.000000 0 0 300 272 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_085 igs rpl36|rps8 rpl36-rps8 83841 84333 0 493 LSC 0.002705 2 0 300 300 no 0.333333 2 0.500000 0.002705 1.000000 45.700000 rps8 gene rps8 rps8 84334 84738 -1 405 LSC 0.000000 0 0 144 300 no 0.000000 1 0.000000 0.000000 1.000000 31.700000 IGS_086 igs rps8|rpl14 rps8-rpl14 84739 84897 0 159 LSC 0.000000 0 0 300 167 no 0.000000 1 0.000000 0.000000 1.000000 31.300000 rpl14 gene rpl14 rpl14 84898 85266 -1 369 LSC 0.001807 1 0 300 186 no 0.333333 2 0.500000 0.001807 1.000000 41.500000 IGS_087 igs rpl14|rpl16 rpl14-rpl16 85267 85392 0 126 LSC 0.000000 0 0 201 60 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 rpl16 gene rpl16 rpl16 85393 86842 -1 1450 LSC 0.004199 9 21 300 300 yes 0.333333 2 0.500000 0.004199 0.985517 50.200000 IGS_088 igs rpl16|rps3 rpl16-rps3 86843 86990 0 148 LSC 0.000000 0 0 248 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps3 gene rps3 rps3 86991 87650 -1 660 LSC 0.001010 1 0 300 39 no 0.333333 2 0.500000 0.001010 1.000000 34.800000 rpl22 gene rpl22 rpl22 87635 88120 -1 486 LSC 0.006859 5 0 300 300 no 0.333333 2 0.500000 0.006859 1.000000 48.200000 IGS_090 igs rpl22|rps19 rpl22-rps19 88121 88158 0 38 IRb 0.000000 0 0 211 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps19 gene rps19 rps19 88159 88437 -1 279 IRb 0.000000 0 0 249 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_091 igs rps19|rpl2 rps19-rpl2 88438 88505 0 68 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl2 gene rpl2 rpl2 88506 90000 -1 1495 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_092 igs rpl2|rpl23 rpl2-rpl23 90001 90018 0 18 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 90019 90300 -1 282 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_093 igs rpl23|trnI rpl23-trnI 90301 90465 0 165 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_094 igs trnI|ycf2 trnI-ycf2 90540 90627 0 88 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 90628 97503 1 6876 IRb 0.000194 2 0 300 300 no 0.333333 2 0.500000 0.000194 1.000000 40.100000 IGS_095 igs ycf2|trnL ycf2-trnL 97504 98521 0 1018 IRb 0.000655 1 0 300 300 no 0.333333 2 0.500000 0.000655 1.000000 46.700000 IGS_096 igs trnL|ndhB trnL-ndhB 98603 99192 0 590 IRb 0.000000 0 0 169 300 no 0.000000 1 0.000000 0.000000 1.000000 37.500000 ndhB gene ndhB ndhB 99193 101352 -1 2160 IRb 0.000309 1 0 300 300 no 0.333333 2 0.500000 0.000309 1.000000 45.100000 IGS_097 igs ndhB|rps7 ndhB-rps7 101353 101734 0 382 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 35.500000 rps7 gene rps7 rps7 101735 102202 -1 468 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_098 igs rps7|rps12 rps7-rps12 102203 102255 0 53 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 102256 103049 -1 794 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_099 igs rps12|trnV rps12-trnV 103050 104855 0 1806 IRb 0.000000 0 6 300 300 no 0.333333 2 0.500000 0.000000 1.000000 46.000000 IGS_100 igs trnV|rrn16S trnV-rrn16S 104928 105167 0 240 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 105168 106658 1 1491 IRb 0.000447 1 0 300 300 no 0.333333 2 0.500000 0.000447 1.000000 46.500000 IGS_101 igs rrn16S|trnI rrn16S-trnI 106659 106952 0 294 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 106953 106994 1 42 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 107949 107983 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_104 igs trnI|trnA trnI-trnA 107984 108053 0 70 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 108054 108091 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 108932 108966 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_107 igs trnA|rrn23S trnA-rrn23S 108967 109129 0 163 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 109130 111939 1 2810 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_108 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 111940 112037 0 98 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 112038 112140 1 103 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_109 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 112141 112396 0 256 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn5S rRNA rrn5S rrn5S 112397 112517 1 121 IRb 0.000000 0 0 300 243 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_110 igs rrn5S|trnR rrn5S-trnR 112518 112770 0 253 IRb 0.002635 1 0 300 240 no 0.333333 2 0.500000 0.002635 1.000000 41.700000 trnR tRNA trnR trnR 112771 112844 1 74 IRb 0.000000 0 0 9 166 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_111 igs trnR|trnN trnR-trnN 112845 113456 0 612 IRb 0.001095 1 3 83 300 no 0.333333 2 0.500000 0.001095 0.995098 38.600000 trnN tRNA trnN trnN 113457 113528 -1 72 IRb 0.000000 0 0 300 249 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_112 igs trnN|ycf1 trnN-ycf1 113529 113881 0 353 IRb 0.001889 1 0 300 300 no 0.333333 2 0.500000 0.001889 1.000000 42.300000 ycf1 gene ycf1 ycf1 113882 115001 1 1120 IRb 0.000000 0 0 103 11 no 0.000000 1 0.000000 0.000000 1.000000 25.800000 ndhF gene ndhF ndhF 114929 117163 -1 2235 SSC 0.004176 14 0 300 159 yes 0.333333 2 0.500000 0.004176 1.000000 44.300000 IGS_114 igs ndhF|rpl32 ndhF-rpl32 117164 118146 0 983 SSC 0.008898 13 9 300 119 yes 0.333333 2 0.500000 0.008898 0.990844 46.700000 rpl32 gene rpl32 rpl32 118147 118329 1 183 SSC 0.010929 3 0 75 98 no 0.333333 2 0.500000 0.010929 1.000000 37.600000 IGS_115 igs rpl32|trnL rpl32-trnL 118330 119472 0 1143 SSC 0.004678 8 6 27 300 no 1.000000 3 1.000000 0.004685 0.997375 49.300000 IGS_116 igs trnL|ccsA trnL-ccsA 119553 119651 0 99 SSC 0.000000 0 0 300 142 no 0.000000 1 0.000000 0.000000 1.000000 29.400000 ccsA gene ccsA ccsA 119652 120611 1 960 SSC 0.003472 5 0 300 30 no 1.000000 3 1.000000 0.003472 1.000000 48.200000 IGS_117 igs ccsA|ndhD ccsA-ndhD 120612 120932 0 321 SSC 0.023207 11 5 300 120 yes 0.333333 2 0.500000 0.023207 0.984424 50.600000 ndhD gene ndhD ndhD 120933 122465 -1 1533 SSC 0.001306 3 2 203 20 no 0.333333 2 0.500000 0.001306 0.998695 33.600000 IGS_118 igs ndhD|psaC ndhD-psaC 122466 122597 0 132 SSC 0.010178 2 1 134 300 no 0.333333 2 0.500000 0.010178 0.992424 42.200000 psaC gene psaC psaC 122598 122843 -1 246 SSC 0.000000 0 0 44 134 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 IGS_119 igs psaC|ndhE psaC-ndhE 122844 123076 0 233 SSC 0.002861 1 0 290 300 no 0.333333 2 0.500000 0.002861 1.000000 41.800000 ndhE gene ndhE ndhE 123077 123382 -1 306 SSC 0.000000 0 0 98 300 no 0.000000 1 0.000000 0.000000 1.000000 26.200000 IGS_120 igs ndhE|ndhG ndhE-ndhG 123383 123623 0 241 SSC 0.000000 0 0 300 165 no 0.000000 1 0.000000 0.000000 1.000000 31.100000 ndhG gene ndhG ndhG 123624 124160 -1 537 SSC 0.003724 3 0 300 41 no 0.333333 2 0.500000 0.003724 1.000000 35.400000 IGS_121 igs ndhG|ndhI ndhG-ndhI 124161 124447 0 287 SSC 0.002381 1 7 185 300 no 0.333333 2 0.500000 0.002381 0.975610 42.600000 ndhI gene ndhI ndhI 124448 124951 -1 504 SSC 0.001323 1 0 245 300 no 0.333333 2 0.500000 0.001323 1.000000 45.100000 IGS_122 igs ndhI|ndhA ndhI-ndhA 124952 125032 0 81 SSC 0.000000 0 0 165 300 no 0.000000 1 0.000000 0.000000 1.000000 31.100000 ndhA gene ndhA ndhA 125033 127249 -1 2217 SSC 0.003913 13 2 246 300 yes 1.000000 3 1.000000 0.003913 0.999098 59.800000 IGS_123 igs ndhA|ndhH ndhA-ndhH 127250 127250 0 1 SSC 0.000000 0 0 66 300 no 0.000000 1 0.000000 NA 1.000000 23.700000 ndhH gene ndhH ndhH 127251 128432 -1 1182 SSC 0.000000 0 0 67 49 no 0.000000 1 0.000000 0.000000 1.000000 28.700000 IGS_124 igs ndhH|rps15 ndhH-rps15 128433 128535 0 103 SSC 0.006472 1 0 300 80 no 0.333333 2 0.500000 0.006472 1.000000 35.100000 rps15 gene rps15 rps15 128536 128808 -1 273 SSC 0.002442 1 0 53 252 no 0.333333 2 0.500000 0.002442 1.000000 30.500000 IGS_125 igs rps15|ycf1 rps15-ycf1 128809 129188 0 380 SSC 0.003518 2 1 192 1 no 0.333333 2 0.500000 0.003518 0.997368 29.200000 ycf1 gene ycf1 ycf1 129189 134612 -1 5424 SSC 0.002212 18 0 71 103 no 1.000000 3 1.000000 0.002212 1.000000 44.200000 IGS_126 igs ycf1|trnN ycf1-trnN 134613 134965 0 353 IRa 0.001889 1 0 300 300 no 0.333333 2 0.500000 0.001889 1.000000 42.300000 trnN tRNA trnN trnN 134966 135037 1 72 IRa 0.000000 0 0 249 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_127 igs trnN|trnR trnN-trnR 135038 135649 0 612 IRa 0.001095 1 3 300 83 no 0.333333 2 0.500000 0.001095 0.995098 38.600000 trnR tRNA trnR trnR 135650 135723 -1 74 IRa 0.000000 0 0 166 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_128 igs trnR|rrn5S trnR-rrn5S 135724 135976 0 253 IRa 0.002635 1 0 240 300 no 0.333333 2 0.500000 0.002635 1.000000 41.700000 rrn5S rRNA rrn5S rrn5S 135977 136097 -1 121 IRa 0.000000 0 0 243 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_129 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 136098 136353 0 256 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 136354 136456 -1 103 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_130 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 136457 136554 0 98 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 136555 139364 -1 2810 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_131 igs rrn23S|trnA rrn23S-trnA 139365 139527 0 163 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 139528 139562 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 140403 140440 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_134 igs trnA|trnI trnA-trnI 140441 140510 0 70 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 140511 140545 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 141500 141541 -1 42 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_137 igs trnI|rrn16S trnI-rrn16S 141542 141835 0 294 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 141836 143326 -1 1491 IRa 0.000447 1 0 300 300 no 0.333333 2 0.500000 0.000447 1.000000 46.500000 IGS_138 igs rrn16S|trnV rrn16S-trnV 143327 143566 0 240 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_139 igs trnV|rps12 trnV-rps12 143639 145444 0 1806 IRa 0.000000 0 6 300 300 no 0.333333 2 0.500000 0.000000 1.000000 46.000000 rps12_part2 gene rps12 rps12 145445 146238 1 794 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_140 igs rps12|rps7 rps12-rps7 146239 146291 0 53 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 146292 146759 1 468 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_141 igs rps7|ndhB rps7-ndhB 146760 147141 0 382 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 35.500000 ndhB gene ndhB ndhB 147142 149301 1 2160 IRa 0.000309 1 0 300 300 no 0.333333 2 0.500000 0.000309 1.000000 45.100000 IGS_142 igs ndhB|trnL ndhB-trnL 149302 149891 0 590 IRa 0.000000 0 0 300 169 no 0.000000 1 0.000000 0.000000 1.000000 37.500000 IGS_143 igs trnL|ycf2 trnL-ycf2 149973 150990 0 1018 IRa 0.000655 1 0 300 300 no 0.333333 2 0.500000 0.000655 1.000000 46.700000 ycf2 gene ycf2 ycf2 150991 157866 -1 6876 IRa 0.000194 2 0 300 300 no 0.333333 2 0.500000 0.000194 1.000000 40.100000 IGS_144 igs ycf2|trnI ycf2-trnI 157867 157954 0 88 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_145 igs trnI|rpl23 trnI-rpl23 158029 158193 0 165 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 158194 158475 1 282 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_146 igs rpl23|rpl2 rpl23-rpl2 158476 158493 0 18 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 158494 159988 1 1495 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_147 igs rpl2|rps19 rpl2-rps19 159989 160056 0 68 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps19 gene rps19 rps19 160057 160335 1 279 IRa 0.000000 0 0 300 249 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_148 igs rps19|trnH rps19-trnH 160336 1 0 275 IRa 0.002424 1 0 300 114 no 0.333333 2 0.500000 0.002424 1.000000 35.100000