Hotspot

rps16-trnQ-UUG

LSC · 5597-6131 · 535 bp

Back to Leersia

Pi 0.00374

MarkerSeek score 47.30

Primer available yes

Label rps16-trnQ-UUG

Feature Metadata

label_name: rps16-trnQ-UUG
feature_type: igs
region: LSC
length_bp: 535
variable_sites: 2
pi: 0.00374
unique_haplotype_count: 2
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 47.30

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
rps16-trnQ-UUG_p1	CCACAATCGATCGTGTCCTT	GAGGTTCGAATCCTTCCGTC	50.0	55.0	58.0	58.1	630 bp	1.0	79.6
rps16-trnQ-UUG_p2	AAGTCGCACGTTGCTTTCTA	GAGGTTCGAATCCTTCCGTC	45.0	55.0	58.1	58.1	609 bp	1.0	78.5
rps16-trnQ-UUG_p3	CCACAATCGATCGTGTCCTT	CTCGGAGGTTCGAATCCTTC	50.0	55.0	58.0	57.8	634 bp	1.0	78.5
rps16-trnQ-UUG_p4	ATCCACAATCGATCGTGTCC	GAGGTTCGAATCCTTCCGTC	50.0	55.0	57.8	58.1	632 bp	1.0	77.8
rps16-trnQ-UUG_p5	AAGTCGCACGTTGCTTTCTA	CTCGGAGGTTCGAATCCTTC	45.0	55.0	58.1	57.8	613 bp	1.0	77.5