feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score rpl23 gene rpl23 rpl23 332 613 1 282 LSC NA 0 282 300 300 no 1.000000 2 1.000000 NA 0.000000 40.000000 IGS_001 igs rpl23|rpl2 rpl23-rpl2 614 631 0 18 LSC NA 0 18 300 300 no 1.000000 2 1.000000 NA 0.000000 40.000000 rpl2 gene rpl2 rpl2 632 1456 1 825 LSC NA 0 825 300 215 yes 1.000000 2 1.000000 NA 0.000000 46.200000 IGS_002 igs rpl2|trnH-GUG rpl2-trnH-GUG 1457 1570 0 114 LSC 0.000000 0 96 300 101 no 1.000000 2 1.000000 NA 0.157895 34.500000 trnH-GUG tRNA trnH-GUG trnH-GUG 1571 1644 -1 74 LSC 0.000000 0 0 300 27 no 0.000000 1 0.000000 NA 1.000000 20.800000 IGS_003 igs trnH-GUG|psbA trnH-GUG-psbA 1645 1926 0 282 LSC 0.055351 15 11 300 300 yes 1.000000 2 1.000000 NA 0.960993 85.400000 psbA gene psbA psbA 1927 2988 -1 1062 LSC 0.001883 2 0 90 156 no 1.000000 2 1.000000 NA 1.000000 51.600000 IGS_004 igs psbA|trnK-UUU psbA-trnK-UUU 2989 3261 0 273 LSC 0.014652 4 0 71 300 no 1.000000 2 1.000000 NA 1.000000 51.200000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 3262 3296 -1 35 LSC 0.000000 0 0 47 300 no 0.000000 1 0.000000 NA 1.000000 22.300000 matK gene matK matK 3599 5125 -1 1527 LSC 0.011177 17 6 300 3 no 1.000000 2 1.000000 NA 0.996071 50.700000 IGS_007 igs matK|trnK-UUU matK-trnK-UUU 5126 5881 0 756 LSC 0.014570 11 1 32 149 no 1.000000 2 1.000000 NA 0.998677 54.700000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 5882 5918 -1 37 LSC 0.000000 0 0 136 112 no 0.000000 1 0.000000 NA 1.000000 27.200000 IGS_008 igs trnK-UUU|rbcL trnK-UUU-rbcL 5919 6764 0 846 LSC 0.022086 18 31 173 19 yes 1.000000 2 1.000000 NA 0.963357 61.300000 rbcL gene rbcL rbcL 6765 8192 -1 1428 LSC 0.007003 10 0 55 27 no 1.000000 2 1.000000 NA 1.000000 49.800000 IGS_009 igs rbcL|atpB rbcL-atpB 8193 8989 0 797 LSC 0.016624 13 15 81 16 no 1.000000 2 1.000000 NA 0.981179 56.300000 atpB gene atpB atpB 8990 10486 1 1497 LSC 0.006012 9 0 22 300 no 1.000000 2 1.000000 NA 1.000000 48.900000 atpE gene atpE atpE 10483 10884 1 402 LSC 0.000000 0 0 300 10 no 0.000000 1 0.000000 NA 1.000000 21.600000 IGS_011 igs atpE|trnM-CAU atpE-trnM-CAU 10885 11031 0 147 LSC 0.027397 4 1 300 156 no 1.000000 2 1.000000 NA 0.993197 65.600000 trnM-CAU tRNA trnM-CAU trnM-CAU 11032 11104 -1 73 LSC 0.000000 0 0 102 83 no 0.000000 1 0.000000 NA 1.000000 25.000000 IGS_012 igs trnM-CAU|trnV-UAC trnM-CAU-trnV-UAC 11105 11278 0 174 LSC 0.011561 2 1 175 163 no 1.000000 2 1.000000 NA 0.994253 56.900000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 11279 11317 1 39 LSC 0.000000 0 0 38 124 no 0.000000 1 0.000000 NA 1.000000 21.600000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 11890 11926 1 37 LSC 0.000000 0 0 19 113 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_015 igs trnV-UAC|ndhC trnV-UAC-ndhC 11927 12166 0 240 LSC 0.004348 1 10 56 14 no 1.000000 2 1.000000 NA 0.958333 45.100000 ndhC gene ndhC ndhC 12167 12529 1 363 LSC 0.008264 3 0 126 58 no 1.000000 2 1.000000 NA 1.000000 47.900000 IGS_016 igs ndhC|ndhK ndhC-ndhK 12530 12573 0 44 LSC 0.000000 0 2 258 14 no 1.000000 2 1.000000 NA 0.954545 43.000000 ndhK gene ndhK ndhK 12574 13215 1 642 LSC 0.014019 9 0 300 3 no 1.000000 2 1.000000 NA 1.000000 52.000000 IGS_017 igs ndhK|ndhJ ndhK-ndhJ 13216 13370 0 155 LSC 0.033113 5 4 37 32 no 1.000000 2 1.000000 NA 0.974194 61.300000 ndhJ gene ndhJ ndhJ 13371 13847 1 477 LSC 0.004193 2 0 59 236 no 1.000000 2 1.000000 NA 1.000000 48.000000 IGS_018 igs ndhJ|trnF-GAA ndhJ-trnF-GAA 13848 14638 0 791 LSC 0.017196 13 35 51 117 no 1.000000 2 1.000000 NA 0.955752 61.700000 trnF-GAA tRNA trnF-GAA trnF-GAA 14639 14711 -1 73 LSC 0.000000 0 0 7 44 no 0.000000 1 0.000000 NA 1.000000 19.300000 IGS_019 igs trnF-GAA|trnL-UAA trnF-GAA-trnL-UAA 14712 15100 0 389 LSC 0.030848 12 0 80 271 no 1.000000 2 1.000000 NA 1.000000 63.100000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 15101 15150 -1 50 LSC 0.000000 0 0 6 221 no 0.000000 1 0.000000 NA 1.000000 19.200000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 15668 15704 -1 37 LSC 0.000000 0 0 65 40 no 0.000000 1 0.000000 NA 1.000000 21.800000 IGS_022 igs trnL-UAA|trnT-UGU trnL-UAA-trnT-UGU 15705 16624 0 920 LSC 0.019744 17 59 102 84 yes 1.000000 2 1.000000 NA 0.935870 65.700000 trnT-UGU tRNA trnT-UGU trnT-UGU 16625 16697 1 73 LSC 0.000000 0 0 226 11 no 0.000000 1 0.000000 NA 1.000000 19.600000 IGS_023 igs trnT-UGU|rps4 trnT-UGU-rps4 16698 17010 0 313 LSC 0.034843 10 26 299 92 no 1.000000 2 1.000000 NA 0.916933 68.300000 rps4 gene rps4 rps4 17011 17616 1 606 LSC 0.004950 3 0 156 56 no 1.000000 2 1.000000 NA 1.000000 50.800000 IGS_024 igs rps4|trnS-GGA rps4-trnS-GGA 17617 17825 0 209 LSC 0.019139 4 0 167 97 no 1.000000 2 1.000000 NA 1.000000 55.800000 trnS-GGA tRNA trnS-GGA trnS-GGA 17826 17913 -1 88 LSC 0.000000 0 0 102 9 no 0.000000 1 0.000000 NA 1.000000 19.400000 IGS_025 igs trnS-GGA|ycf3 trnS-GGA-ycf3 17914 18178 0 265 LSC 0.015094 4 0 190 149 no 1.000000 2 1.000000 NA 1.000000 57.400000 ycf3 gene ycf3 ycf3 18179 20131 1 1953 LSC 0.008713 17 2 50 5 no 1.000000 2 1.000000 NA 0.998976 48.300000 IGS_026 igs ycf3|psaA ycf3-psaA 20132 20808 0 677 LSC 0.026235 17 29 114 218 yes 1.000000 2 1.000000 NA 0.957164 71.400000 psaA gene psaA psaA 20809 23061 1 2253 LSC 0.003551 8 0 29 300 no 1.000000 2 1.000000 NA 1.000000 46.400000 IGS_027 igs psaA|psaB psaA-psaB 23062 23086 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psaB gene psaB psaB 23087 25291 1 2205 LSC 0.003175 7 0 300 27 no 1.000000 2 1.000000 NA 1.000000 46.100000 IGS_028 igs psaB|rps14 psaB-rps14 25292 25417 0 126 LSC 0.007937 1 0 84 193 no 1.000000 2 1.000000 NA 1.000000 48.400000 rps14 gene rps14 rps14 25418 25720 1 303 LSC 0.003300 1 0 98 17 no 1.000000 2 1.000000 NA 1.000000 40.700000 IGS_029 igs rps14|trnfM-CAU rps14-trnfM-CAU 25721 25884 0 164 LSC 0.018634 3 3 109 129 no 1.000000 2 1.000000 NA 0.981707 58.100000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 25885 25958 1 74 LSC 0.000000 0 0 95 55 no 0.000000 1 0.000000 NA 1.000000 22.900000 IGS_030 igs trnfM-CAU|trnG-GCC trnfM-CAU-trnG-GCC 25959 26125 0 167 LSC 0.013605 2 20 169 249 no 1.000000 2 1.000000 NA 0.880240 60.700000 trnG-GCC tRNA trnG-GCC trnG-GCC 26126 26196 -1 71 LSC 0.000000 0 0 15 178 no 0.000000 1 0.000000 NA 1.000000 19.900000 IGS_031 igs trnG-GCC|psbZ trnG-GCC-psbZ 26197 26773 0 577 LSC 0.019964 11 26 86 27 no 1.000000 2 1.000000 NA 0.954939 61.000000 psbZ gene psbZ psbZ 26774 26962 -1 189 LSC 0.005291 1 0 138 100 no 1.000000 2 1.000000 NA 1.000000 48.000000 IGS_032 igs psbZ|trnS-UGA psbZ-trnS-UGA 26963 27291 0 329 LSC 0.021407 7 2 161 143 yes 1.000000 2 1.000000 NA 0.993921 61.700000 trnS-UGA tRNA trnS-UGA trnS-UGA 27292 27384 1 93 LSC 0.000000 0 0 29 50 no 0.000000 1 0.000000 NA 1.000000 20.900000 IGS_033 igs trnS-UGA|psbC trnS-UGA-psbC 27385 27611 0 227 LSC 0.070485 16 0 122 291 yes 1.000000 2 1.000000 NA 1.000000 78.000000 psbC gene psbC psbC 27612 29033 -1 1422 LSC 0.006329 9 0 37 112 no 1.000000 2 1.000000 NA 1.000000 50.200000 psbD gene psbD psbD 28981 30042 -1 1062 LSC 0.002825 3 0 39 139 no 1.000000 2 1.000000 NA 1.000000 48.300000 IGS_035 igs psbD|trnT-GGU psbD-trnT-GGU 30043 31408 0 1366 LSC 0.015873 21 43 140 72 no 1.000000 2 1.000000 NA 0.968521 61.300000 trnT-GGU tRNA trnT-GGU trnT-GGU 31409 31480 -1 72 LSC 0.000000 0 0 13 0 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_036 igs trnT-GGU|trnD-GUC trnT-GGU-trnD-GUC 31481 31731 0 251 LSC 0.020325 5 5 85 300 no 1.000000 2 1.000000 NA 0.980080 57.400000 trnD-GUC tRNA trnD-GUC trnD-GUC 31732 31805 -1 74 LSC 0.000000 0 0 56 300 no 0.000000 1 0.000000 NA 1.000000 22.900000 IGS_037 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 31806 32258 0 453 LSC 0.000000 0 7 130 112 no 1.000000 2 1.000000 NA 0.984547 50.600000 trnY-GUA tRNA trnY-GUA trnY-GUA 32259 32342 -1 84 LSC 0.000000 0 0 300 28 no 0.000000 1 0.000000 NA 1.000000 20.900000 IGS_038 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 32343 32408 0 66 LSC 0.030303 2 0 300 187 no 1.000000 2 1.000000 NA 1.000000 68.900000 trnE-UUC tRNA trnE-UUC trnE-UUC 32409 32481 -1 73 LSC 0.000000 0 0 27 114 no 0.000000 1 0.000000 NA 1.000000 20.800000 IGS_039 igs trnE-UUC|psbM trnE-UUC-psbM 32482 32934 0 453 LSC 0.013575 6 11 100 48 no 1.000000 2 1.000000 NA 0.975717 54.400000 psbM gene psbM psbM 32935 33039 1 105 LSC 0.009524 1 0 39 36 no 1.000000 2 1.000000 NA 1.000000 45.700000 IGS_040 igs psbM|petN psbM-petN 33040 33786 0 747 LSC 0.022069 16 22 56 163 no 1.000000 2 1.000000 NA 0.970549 63.400000 petN gene petN petN 33787 33876 -1 90 LSC 0.000000 0 0 59 73 no 0.000000 1 0.000000 NA 1.000000 23.200000 IGS_041 igs petN|trnC-GCA petN-trnC-GCA 33877 34357 0 481 LSC 0.027542 13 9 149 105 yes 1.000000 2 1.000000 NA 0.981289 66.700000 trnC-GCA tRNA trnC-GCA trnC-GCA 34358 34428 -1 71 LSC 0.000000 0 0 11 34 no 0.000000 1 0.000000 NA 1.000000 19.600000 IGS_042 igs trnC-GCA|rpoB trnC-GCA-rpoB 34429 35565 0 1137 LSC 0.017715 20 8 82 10 no 1.000000 2 1.000000 NA 0.992964 55.400000 rpoB gene rpoB rpoB 35566 38778 1 3213 LSC 0.005913 19 0 22 3 no 1.000000 2 1.000000 NA 1.000000 43.900000 IGS_043 igs rpoB|rpoC1 rpoB-rpoC1 38779 38804 0 26 LSC 0.038462 1 0 4 300 no 1.000000 2 1.000000 NA 1.000000 59.900000 rpoC1 gene rpoC1 rpoC1 38805 41641 1 2837 LSC 0.005999 17 3 22 132 no 1.000000 2 1.000000 NA 0.998943 46.200000 IGS_044 igs rpoC1|rpoC2 rpoC1-rpoC2 41642 41835 0 194 LSC 0.010309 2 0 300 130 no 1.000000 2 1.000000 NA 1.000000 53.200000 rpoC2 gene rpoC2 rpoC2 41836 46008 1 4173 LSC 0.005520 23 6 1 27 no 1.000000 2 1.000000 NA 0.998562 42.200000 IGS_045 igs rpoC2|rps2 rpoC2-rps2 46009 46276 0 268 LSC 0.025773 5 74 57 98 no 1.000000 2 1.000000 NA 0.723881 54.200000 rps2 gene rps2 rps2 46277 46987 1 711 LSC 0.001406 1 0 111 31 no 1.000000 2 1.000000 NA 1.000000 46.900000 IGS_046 igs rps2|atpI rps2-atpI 46988 47311 0 324 LSC 0.033223 10 23 300 300 yes 1.000000 2 1.000000 NA 0.929012 76.100000 atpI gene atpI atpI 47312 48055 1 744 LSC 0.001344 1 0 9 37 no 1.000000 2 1.000000 NA 1.000000 45.200000 IGS_047 igs atpI|atpH atpI-atpH 48056 48727 0 672 LSC 0.010432 7 1 267 300 no 1.000000 2 1.000000 NA 0.998512 64.900000 atpH gene atpH atpH 48728 48973 1 246 LSC 0.000000 0 0 67 89 no 0.000000 1 0.000000 NA 1.000000 23.800000 IGS_048 igs atpH|atpA atpH-atpA 48974 50931 0 1958 LSC 0.018585 36 21 300 300 no 1.000000 2 1.000000 NA 0.989275 69.500000 atpA gene atpA atpA 50932 52464 1 1533 LSC 0.003262 5 0 26 11 no 1.000000 2 1.000000 NA 1.000000 46.400000 IGS_049 igs atpA|trnR-UCU atpA-trnR-UCU 52465 52791 0 327 LSC 0.028269 8 44 261 4 no 1.000000 2 1.000000 NA 0.865443 56.600000 trnR-UCU tRNA trnR-UCU trnR-UCU 52792 52863 -1 72 LSC 0.013889 1 0 36 60 no 1.000000 2 1.000000 NA 1.000000 48.200000 IGS_050 igs trnR-UCU|trnG-UCC trnR-UCU-trnG-UCC 52864 52968 0 105 LSC 0.009524 1 0 67 140 no 1.000000 2 1.000000 NA 1.000000 48.000000 trnG-UCC_part2 tRNA trnG-UCC trnG-UCC 52969 53017 -1 49 LSC 0.000000 0 0 44 91 no 0.000000 1 0.000000 NA 1.000000 22.100000 trnG-UCC_part1 tRNA trnG-UCC trnG-UCC 53723 53745 -1 23 LSC 0.000000 0 0 44 26 no 0.000000 1 0.000000 NA 1.000000 20.700000 IGS_053 igs trnG-UCC|trnS-GCU trnG-UCC-trnS-GCU 53746 54131 0 386 LSC 0.043011 16 14 67 217 yes 1.000000 2 1.000000 NA 0.963731 72.400000 trnS-GCU tRNA trnS-GCU trnS-GCU 54132 54218 1 87 LSC 0.000000 0 0 2 130 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_054 igs trnS-GCU|psbI trnS-GCU-psbI 54219 54406 0 188 LSC 0.029070 5 16 89 33 yes 1.000000 2 1.000000 NA 0.914894 60.200000 psbI gene psbI psbI 54407 54517 -1 111 LSC 0.009009 1 0 34 28 no 1.000000 2 1.000000 NA 1.000000 44.800000 IGS_055 igs psbI|psbK psbI-psbK 54518 54962 0 445 LSC 0.023866 10 26 77 99 no 1.000000 2 1.000000 NA 0.941573 64.500000 psbK gene psbK psbK 54963 55148 -1 186 LSC 0.010753 2 0 59 5 no 1.000000 2 1.000000 NA 1.000000 44.100000 IGS_056 igs psbK|trnQ-UUG psbK-trnQ-UUG 55149 55564 0 416 LSC 0.012019 5 0 67 98 no 1.000000 2 1.000000 NA 1.000000 51.900000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 55565 55636 1 72 LSC 0.000000 0 0 144 26 no 0.000000 1 0.000000 NA 1.000000 20.700000 IGS_057 igs trnQ-UUG|psaI trnQ-UUG-psaI 55637 59485 0 3849 LSC 0.021526 79 179 216 109 yes 1.000000 2 1.000000 NA 0.953494 64.200000 psaI gene psaI psaI 59486 59590 1 105 LSC 0.000000 0 0 71 4 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_058 igs psaI|ycf4 psaI-ycf4 59591 59764 0 174 LSC 0.017241 3 0 176 31 no 1.000000 2 1.000000 NA 1.000000 49.700000 ycf4 gene ycf4 ycf4 59765 60373 1 609 LSC 0.011494 7 0 52 8 no 1.000000 2 1.000000 NA 1.000000 51.000000 IGS_059 igs ycf4|cemA ycf4-cemA 60374 60822 0 449 LSC 0.032037 14 12 102 191 no 1.000000 2 1.000000 NA 0.973274 69.200000 cemA gene cemA cemA 60823 61512 1 690 LSC 0.004348 3 0 76 0 no 1.000000 2 1.000000 NA 1.000000 46.200000 IGS_060 igs cemA|petA cemA-petA 61513 61718 0 206 LSC 0.009756 2 1 300 300 no 1.000000 2 1.000000 NA 0.995146 58.600000 petA gene petA petA 61719 62681 1 963 LSC 0.006231 6 0 131 4 no 1.000000 2 1.000000 NA 1.000000 47.600000 IGS_061 igs petA|psbJ petA-psbJ 62682 63535 0 854 LSC 0.023838 20 15 92 194 no 1.000000 2 1.000000 NA 0.982436 66.000000 psbJ gene psbJ psbJ 63536 63658 -1 123 LSC 0.000000 0 0 10 71 no 0.000000 1 0.000000 NA 1.000000 19.500000 IGS_062 igs psbJ|psbL psbJ-psbL 63659 63844 0 186 LSC 0.027174 5 2 133 281 no 1.000000 2 1.000000 NA 0.989247 64.100000 psbL gene psbL psbL 63845 63976 -1 132 LSC 0.000000 0 0 17 149 no 0.000000 1 0.000000 NA 1.000000 20.000000 IGS_063 igs psbL|psbF psbL-psbF 63977 63983 0 7 LSC 0.000000 0 0 149 142 no 0.000000 1 0.000000 NA 1.000000 29.400000 psbF gene psbF psbF 63984 64103 -1 120 LSC 0.000000 0 0 156 22 no 0.000000 1 0.000000 NA 1.000000 20.400000 IGS_064 igs psbF|psbE psbF-psbE 64104 64112 0 9 LSC 0.000000 0 0 276 13 no 0.000000 1 0.000000 NA 1.000000 19.700000 psbE gene psbE psbE 64113 64364 -1 252 LSC 0.003968 1 0 285 283 no 1.000000 2 1.000000 NA 1.000000 54.800000 IGS_065 igs psbE|petL psbE-petL 64365 65296 0 932 LSC 0.009956 9 28 238 120 no 1.000000 2 1.000000 NA 0.969957 61.300000 petL gene petL petL 65297 65392 1 96 LSC 0.000000 0 0 127 24 no 0.000000 1 0.000000 NA 1.000000 20.600000 IGS_066 igs petL|petG petL-petG 65393 65547 0 155 LSC 0.019355 3 0 223 147 no 1.000000 2 1.000000 NA 1.000000 59.700000 petG gene petG petG 65548 65661 1 114 LSC 0.000000 0 0 43 33 no 0.000000 1 0.000000 NA 1.000000 21.200000 IGS_067 igs petG|trnW-CCA petG-trnW-CCA 65662 65808 0 147 LSC 0.008772 1 33 157 142 no 1.000000 2 1.000000 NA 0.775510 52.900000 trnW-CCA tRNA trnW-CCA trnW-CCA 65809 65882 -1 74 LSC 0.000000 0 0 113 68 no 0.000000 1 0.000000 NA 1.000000 23.800000 IGS_068 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 65883 66076 0 194 LSC 0.027778 5 14 187 186 yes 1.000000 2 1.000000 NA 0.927835 71.400000 trnP-UGG tRNA trnP-UGG trnP-UGG 66077 66150 -1 74 LSC 0.000000 0 0 88 112 no 0.000000 1 0.000000 NA 1.000000 25.400000 IGS_069 igs trnP-UGG|psaJ trnP-UGG-psaJ 66151 66382 0 232 LSC 0.012931 3 0 162 9 no 1.000000 2 1.000000 NA 1.000000 45.600000 psaJ gene psaJ psaJ 66383 66517 1 135 LSC 0.022222 3 0 74 113 no 1.000000 2 1.000000 NA 1.000000 55.800000 IGS_070 igs psaJ|rpl33 psaJ-rpl33 66518 66986 0 469 LSC 0.019868 9 16 57 300 no 1.000000 2 1.000000 NA 0.965885 59.900000 rpl33 gene rpl33 rpl33 66987 67187 1 201 LSC 0.000000 0 0 81 106 no 0.000000 1 0.000000 NA 1.000000 24.800000 IGS_071 igs rpl33|rps18 rpl33-rps18 67188 67389 0 202 LSC 0.014851 3 0 282 26 no 1.000000 2 1.000000 NA 1.000000 48.000000 rps18 gene rps18 rps18 67390 67695 1 306 LSC 0.006536 2 0 77 75 no 1.000000 2 1.000000 NA 1.000000 47.000000 IGS_072 igs rps18|rpl20 rps18-rpl20 67696 67894 0 199 LSC 0.025253 5 1 35 27 no 1.000000 2 1.000000 NA 0.994975 54.500000 rpl20 gene rpl20 rpl20 67895 68287 -1 393 LSC 0.007634 3 0 2 109 no 1.000000 2 1.000000 NA 1.000000 44.000000 IGS_073 igs rpl20|rps12 rpl20-rps12 68288 69087 0 800 LSC 0.005013 4 2 175 252 no 1.000000 2 1.000000 NA 0.997500 60.000000 rps12_part1 gene rps12 rps12 69088 69201 -1 114 LSC 0.000000 0 0 300 138 no 0.000000 1 0.000000 NA 1.000000 29.100000 IGS_074 igs rps12|clpP rps12-clpP 69202 69411 0 210 LSC 0.009569 2 1 300 51 no 1.000000 2 1.000000 NA 0.995238 47.300000 clpP gene clpP clpP 69412 71475 -1 2064 LSC 0.014706 30 24 70 56 yes 1.000000 2 1.000000 NA 0.988372 56.300000 IGS_075 igs clpP|psbB clpP-psbB 71476 71940 0 465 LSC 0.021834 10 7 108 125 no 1.000000 2 1.000000 NA 0.984946 63.000000 psbB gene psbB psbB 71941 73467 1 1527 LSC 0.003274 5 0 63 9 no 1.000000 2 1.000000 NA 1.000000 46.300000 IGS_076 igs psbB|psbT psbB-psbT 73468 73631 0 164 LSC 0.030675 5 1 300 141 no 1.000000 2 1.000000 NA 0.993902 66.300000 psbT gene psbT psbT 73632 73739 1 108 LSC 0.000000 0 0 50 33 no 0.000000 1 0.000000 NA 1.000000 21.200000 IGS_077 igs psbT|psbN psbT-psbN 73740 73795 0 56 LSC 0.053571 3 0 158 137 yes 1.000000 2 1.000000 NA 1.000000 77.000000 psbN gene psbN psbN 73796 73927 -1 132 LSC 0.000000 0 0 18 5 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_078 igs psbN|psbH psbN-psbH 73928 74040 0 113 LSC 0.008850 1 0 150 227 no 1.000000 2 1.000000 NA 1.000000 53.800000 psbH gene psbH psbH 74041 74262 1 222 LSC 0.000000 0 0 107 5 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_079 igs psbH|petB psbH-petB 74263 74398 0 136 LSC 0.007353 1 0 300 83 no 1.000000 2 1.000000 NA 1.000000 48.000000 petB gene petB petB 74399 75862 1 1464 LSC 0.008898 13 3 130 11 no 1.000000 2 1.000000 NA 0.997951 49.900000 IGS_080 igs petB|rpoA petB-rpoA 75863 77404 0 1542 LSC 0.011681 18 1 37 33 no 1.000000 2 1.000000 NA 0.999351 52.900000 rpoA gene rpoA rpoA 77405 78400 -1 996 LSC 0.009036 9 0 38 62 no 1.000000 2 1.000000 NA 1.000000 51.800000 IGS_081 igs rpoA|rps11 rpoA-rps11 78401 78480 0 80 LSC 0.012500 1 0 64 300 no 1.000000 2 1.000000 NA 1.000000 49.500000 rps11 gene rps11 rps11 78481 78897 -1 417 LSC 0.004796 2 0 17 68 no 1.000000 2 1.000000 NA 1.000000 44.000000 IGS_082 igs rps11|rpl36 rps11-rpl36 78898 79075 0 178 LSC 0.029240 5 7 38 96 no 1.000000 2 1.000000 NA 0.960674 60.800000 rpl36 gene rpl36 rpl36 79076 79189 -1 114 LSC 0.008772 1 0 6 78 no 1.000000 2 1.000000 NA 1.000000 43.000000 IGS_083 igs rpl36|rps8 rpl36-rps8 79190 79570 0 381 LSC 0.019774 7 27 17 264 no 1.000000 2 1.000000 NA 0.929134 55.900000 rps8 gene rps8 rps8 79571 79975 -1 405 LSC 0.004938 2 0 119 116 no 1.000000 2 1.000000 NA 1.000000 51.200000 IGS_084 igs rps8|rpl14 rps8-rpl14 79976 80304 0 329 LSC 0.023411 7 30 17 137 no 1.000000 2 1.000000 NA 0.908815 56.300000 rpl14 gene rpl14 rpl14 80305 80673 -1 369 LSC 0.010840 4 0 53 10 no 1.000000 2 1.000000 NA 1.000000 45.900000 IGS_085 igs rpl14|rpl16 rpl14-rpl16 80674 80812 0 139 LSC 0.029851 4 5 54 111 no 1.000000 2 1.000000 NA 0.964029 62.100000 rpl16 gene rpl16 rpl16 80813 82337 -1 1525 LSC 0.010060 15 34 60 64 no 1.000000 2 1.000000 NA 0.977705 56.100000 IGS_086 igs rpl16|rps3 rpl16-rps3 82338 82489 0 152 LSC 0.032895 5 0 176 42 no 1.000000 2 1.000000 NA 1.000000 59.600000 rps3 gene rps3 rps3 82490 83146 -1 657 LSC 0.010654 7 0 9 56 no 1.000000 2 1.000000 NA 1.000000 50.600000 IGS_087 igs rps3|rps19 rps3-rps19 83147 83607 0 461 LSC 0.050998 23 10 14 42 yes 1.000000 2 1.000000 NA 0.978308 72.700000 rps19 gene rps19 rps19 83608 83886 -1 279 LSC 0.014493 4 0 1 115 no 1.000000 2 1.000000 NA 0.989247 45.600000 IGS_088 igs rps19|rpl2 rps19-rpl2 83887 83940 0 54 LSC 0.000000 0 0 26 61 no 0.000000 1 0.000000 NA 1.000000 20.700000 rpl2 gene rpl2 rpl2 83941 84765 -1 825 LSC 0.003636 3 0 80 300 no 1.000000 2 1.000000 NA 1.000000 51.800000 IGS_089 igs rpl2|rpl23 rpl2-rpl23 84766 84783 0 18 LSC 0.000000 0 0 149 300 no 0.000000 1 0.000000 NA 1.000000 29.900000 rpl23 gene rpl23 rpl23 84784 85065 -1 282 LSC 0.000000 0 0 167 251 no 0.000000 1 0.000000 NA 1.000000 31.300000 IGS_090 igs rpl23|trnI-CAU rpl23-trnI-CAU 85066 85508 0 443 LSC 0.004515 2 0 300 300 no 1.000000 2 1.000000 NA 1.000000 58.100000 trnI-CAU tRNA trnI-CAU trnI-CAU 85509 85582 -1 74 LSC 0.000000 0 0 17 300 no 0.000000 1 0.000000 NA 1.000000 20.000000 IGS_091 igs trnI-CAU|ycf2 trnI-CAU-ycf2 85583 85670 0 88 LSC 0.000000 0 0 91 249 no 0.000000 1 0.000000 NA 1.000000 25.600000 ycf2 gene ycf2 ycf2 85671 92525 1 6855 IRb 0.001605 11 0 179 300 no 1.000000 2 1.000000 NA 1.000000 51.800000 IGS_092 igs ycf2|trnL-CAA ycf2-trnL-CAA 92526 93111 0 586 IRb 0.001706 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 59.400000 trnL-CAA tRNA trnL-CAA trnL-CAA 93112 93192 -1 81 IRb 0.000000 0 0 205 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_093 igs trnL-CAA|ndhB trnL-CAA-ndhB 93193 93777 0 585 IRb 0.001709 1 0 286 300 no 1.000000 2 1.000000 NA 1.000000 59.400000 ndhB gene ndhB ndhB 93778 95953 -1 2176 IRb 0.000919 2 0 111 300 no 1.000000 2 1.000000 NA 1.000000 51.200000 IGS_094 igs ndhB|rps7 ndhB-rps7 95954 96313 0 360 IRb 0.000000 0 0 300 12 no 0.000000 1 0.000000 NA 1.000000 20.900000 rps7 gene rps7 rps7 96314 96781 -1 468 IRb 0.004274 2 0 300 300 no 1.000000 2 1.000000 NA 1.000000 58.500000 IGS_095 igs rps7|rps12 rps7-rps12 96782 96824 0 43 IRb 0.000000 0 0 167 300 no 0.000000 1 0.000000 NA 1.000000 31.300000 rps12_part2 gene rps12 rps12 96825 97082 -1 258 IRb 0.000000 0 0 210 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_096 igs rps12|trnV-GAC rps12-trnV-GAC 97083 98881 0 1799 IRb 0.000000 0 3 300 300 no 1.000000 2 1.000000 NA 0.998332 58.300000 trnV-GAC tRNA trnV-GAC trnV-GAC 98882 98953 1 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_097 igs trnV-GAC|rrn16 trnV-GAC-rrn16 98954 99174 0 221 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn16 rRNA rrn16 rrn16 99175 100665 1 1491 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 40.000000 IGS_098 igs rrn16|trnI-GAU rrn16-trnI-GAU 100666 100951 0 286 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 100952 100987 1 36 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 101946 101980 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_101 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 101981 102044 0 64 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 102045 102082 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 102890 102924 1 35 IRb 0.000000 0 0 234 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_104 igs trnA-UGC|rrn23 trnA-UGC-rrn23 102925 103082 0 158 IRb 0.000000 0 0 269 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn23 rRNA rrn23 rrn23 103083 105897 1 2815 IRb 0.000000 0 0 300 27 no 0.000000 1 0.000000 NA 1.000000 24.300000 IGS_105 igs rrn23|rrn4.5 rrn23-rrn4.5 105898 105998 0 101 IRb 0.019802 2 0 300 300 no 1.000000 2 1.000000 NA 1.000000 63.900000 rrn4.5 rRNA rrn4.5 rrn4.5 105999 106102 1 104 IRb 0.000000 0 0 36 300 no 0.000000 1 0.000000 NA 1.000000 21.400000 IGS_106 igs rrn4.5|rrn5 rrn4.5-rrn5 106103 106318 0 216 IRb 0.000000 0 0 140 300 no 0.000000 1 0.000000 NA 1.000000 29.200000 rrn5 rRNA rrn5 rrn5 106319 106439 1 121 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_107 igs rrn5|trnR-ACG rrn5-trnR-ACG 106440 106682 0 243 IRb 0.000000 0 0 300 216 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnR-ACG tRNA trnR-ACG trnR-ACG 106683 106756 1 74 IRb 0.000000 0 0 300 142 no 0.000000 1 0.000000 NA 1.000000 29.400000 IGS_108 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 106757 107397 0 641 IRb 0.010972 7 3 300 213 no 1.000000 2 1.000000 NA 0.995320 65.500000 trnN-GUU tRNA trnN-GUU trnN-GUU 107398 107469 -1 72 IRb 0.000000 0 0 74 141 no 0.000000 1 0.000000 NA 1.000000 24.300000 IGS_109 igs trnN-GUU|ndhF trnN-GUU-ndhF 107470 107688 0 219 IRb 0.004566 1 0 146 4 no 1.000000 2 1.000000 NA 1.000000 40.400000 ndhF gene ndhF ndhF 107689 109938 -1 2250 SSC 0.014248 32 4 77 51 no 1.000000 2 1.000000 NA 0.998222 54.400000 IGS_110 igs ndhF|rpl32 ndhF-rpl32 109939 110527 0 589 SSC 0.037479 22 2 179 40 yes 1.000000 2 1.000000 NA 0.996604 68.400000 rpl32 gene rpl32 rpl32 110528 110689 1 162 SSC 0.012346 2 0 11 33 no 1.000000 2 1.000000 NA 1.000000 45.400000 IGS_111 igs rpl32|trnL-UAG rpl32-trnL-UAG 110690 111235 0 546 SSC 0.024164 13 8 9 89 no 1.000000 2 1.000000 NA 0.985348 58.600000 trnL-UAG tRNA trnL-UAG trnL-UAG 111236 111315 1 80 SSC 0.000000 0 0 71 9 no 0.000000 1 0.000000 NA 1.000000 19.400000 IGS_112 igs trnL-UAG|ccsA trnL-UAG-ccsA 111316 111403 0 88 SSC 0.056818 5 0 151 72 yes 1.000000 2 1.000000 NA 1.000000 72.500000 ccsA gene ccsA ccsA 111404 112375 1 972 SSC 0.012346 12 0 58 28 no 1.000000 2 1.000000 NA 1.000000 52.900000 IGS_113 igs ccsA|ndhD ccsA-ndhD 112376 112680 0 305 SSC 0.034014 10 11 129 30 no 1.000000 2 1.000000 NA 0.963934 62.800000 ndhD gene ndhD ndhD 112681 114180 -1 1500 SSC 0.009333 14 0 3 46 no 1.000000 2 1.000000 NA 1.000000 49.300000 IGS_114 igs ndhD|psaC ndhD-psaC 114181 114308 0 128 SSC 0.063492 8 2 101 177 yes 1.000000 2 1.000000 NA 0.984375 76.900000 psaC gene psaC psaC 114309 114554 -1 246 SSC 0.008130 2 0 72 21 no 1.000000 2 1.000000 NA 1.000000 43.700000 IGS_115 igs psaC|ndhE psaC-ndhE 114555 114853 0 299 SSC 0.010033 3 0 65 9 no 1.000000 2 1.000000 NA 1.000000 43.900000 ndhE gene ndhE ndhE 114854 115159 -1 306 SSC 0.009804 3 0 40 62 no 1.000000 2 1.000000 NA 1.000000 46.300000 IGS_116 igs ndhE|ndhG ndhE-ndhG 115160 115378 0 219 SSC 0.055046 12 1 53 219 yes 1.000000 2 1.000000 NA 0.995434 71.300000 ndhG gene ndhG ndhG 115379 115909 -1 531 SSC 0.009416 5 0 0 83 no 1.000000 2 1.000000 NA 1.000000 47.700000 IGS_117 igs ndhG|ndhI ndhG-ndhI 115910 116236 0 327 SSC 0.027523 9 0 81 18 no 1.000000 2 1.000000 NA 1.000000 55.200000 ndhI gene ndhI ndhI 116237 116725 -1 489 SSC 0.006135 3 0 42 53 no 1.000000 2 1.000000 NA 1.000000 48.100000 IGS_118 igs ndhI|ndhA ndhI-ndhA 116726 116803 0 78 SSC 0.025641 2 0 233 126 no 1.000000 2 1.000000 NA 1.000000 61.700000 ndhA gene ndhA ndhA 116804 119169 -1 2366 SSC 0.018321 43 19 19 187 no 1.000000 2 1.000000 NA 0.991970 54.700000 IGS_119 igs ndhA|ndhH ndhA-ndhH 119170 119170 0 1 SSC 0.000000 0 0 132 186 no 0.000000 1 0.000000 NA 1.000000 28.600000 ndhH gene ndhH ndhH 119171 120352 -1 1182 SSC 0.004230 5 0 133 1 no 1.000000 2 1.000000 NA 1.000000 46.300000 IGS_120 igs ndhH|rps15 ndhH-rps15 120353 120448 0 96 SSC 0.020833 2 0 300 241 no 1.000000 2 1.000000 NA 1.000000 64.500000 rps15 gene rps15 rps15 120449 120721 -1 273 SSC 0.010989 3 0 93 23 no 1.000000 2 1.000000 NA 1.000000 45.500000 IGS_121 igs rps15|ycf1 rps15-ycf1 120722 121071 0 350 SSC 0.038123 13 9 23 78 no 1.000000 2 1.000000 NA 0.974286 64.600000 ycf1 gene ycf1 ycf1 121072 126384 -1 5313 SSC 0.019107 101 27 51 198 yes 1.000000 2 1.000000 NA 0.994918 52.800000 IGS_122 igs ycf1|trnN-GUU ycf1-trnN-GUU 126385 126724 0 340 IRa 0.002941 1 0 33 146 no 1.000000 2 1.000000 NA 1.000000 42.500000 trnN-GUU tRNA trnN-GUU trnN-GUU 126725 126796 1 72 IRa 0.000000 0 0 141 74 no 0.000000 1 0.000000 NA 1.000000 24.300000 IGS_123 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 126797 127437 0 641 IRa 0.010972 7 3 213 300 no 1.000000 2 1.000000 NA 0.995320 65.500000 trnR-ACG tRNA trnR-ACG trnR-ACG 127438 127511 -1 74 IRa 0.000000 0 0 142 300 no 0.000000 1 0.000000 NA 1.000000 29.400000 IGS_124 igs trnR-ACG|rrn5 trnR-ACG-rrn5 127512 127754 0 243 IRa 0.000000 0 0 216 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn5 rRNA rrn5 rrn5 127755 127875 -1 121 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_125 igs rrn5|rrn4.5 rrn5-rrn4.5 127876 128091 0 216 IRa 0.000000 0 0 300 140 no 0.000000 1 0.000000 NA 1.000000 29.200000 rrn4.5 rRNA rrn4.5 rrn4.5 128092 128195 -1 104 IRa 0.000000 0 0 300 36 no 0.000000 1 0.000000 NA 1.000000 21.400000 IGS_126 igs rrn4.5|rrn23 rrn4.5-rrn23 128196 128296 0 101 IRa 0.019802 2 0 300 300 no 1.000000 2 1.000000 NA 1.000000 63.900000 rrn23 rRNA rrn23 rrn23 128297 131111 -1 2815 IRa 0.000000 0 0 27 300 no 0.000000 1 0.000000 NA 1.000000 24.300000 IGS_127 igs rrn23|trnA-UGC rrn23-trnA-UGC 131112 131269 0 158 IRa 0.000000 0 0 300 269 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 131270 131304 -1 35 IRa 0.000000 0 0 300 234 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 132112 132149 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_130 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 132150 132213 0 64 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 132214 132248 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 133207 133242 -1 36 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_133 igs trnI-GAU|rrn16 trnI-GAU-rrn16 133243 133528 0 286 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn16 rRNA rrn16 rrn16 133529 135019 -1 1491 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 40.000000 IGS_134 igs rrn16|trnV-GAC rrn16-trnV-GAC 135020 135240 0 221 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnV-GAC tRNA trnV-GAC trnV-GAC 135241 135312 -1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_135 igs trnV-GAC|rps12 trnV-GAC-rps12 135313 137111 0 1799 IRa 0.000000 0 3 300 300 no 1.000000 2 1.000000 NA 0.998332 58.300000 rps12_part2 gene rps12 rps12 137112 137369 1 258 IRa 0.000000 0 0 300 210 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_136 igs rps12|rps7 rps12-rps7 137370 137412 0 43 IRa 0.000000 0 0 300 167 no 0.000000 1 0.000000 NA 1.000000 31.300000 rps7 gene rps7 rps7 137413 137880 1 468 IRa 0.004274 2 0 300 300 no 1.000000 2 1.000000 NA 1.000000 58.500000 IGS_137 igs rps7|ndhB rps7-ndhB 137881 138240 0 360 IRa 0.000000 0 0 12 300 no 0.000000 1 0.000000 NA 1.000000 20.900000 ndhB gene ndhB ndhB 138241 140416 1 2176 IRa 0.000919 2 0 300 111 no 1.000000 2 1.000000 NA 1.000000 51.200000 IGS_138 igs ndhB|trnL-CAA ndhB-trnL-CAA 140417 141001 0 585 IRa 0.001709 1 0 300 286 no 1.000000 2 1.000000 NA 1.000000 59.400000 trnL-CAA tRNA trnL-CAA trnL-CAA 141002 141082 1 81 IRa 0.000000 0 0 300 205 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_139 igs trnL-CAA|rpl23 trnL-CAA-rpl23 141083 331 0 6086 IRa 0.001216 7 331 300 300 no 1.000000 2 1.000000 NA 0.945613 57.900000