feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 3 77 -1 75 LSC 0.000000 0 2 300 53 no 0.200000 3 0.333333 0.000000 0.986667 29.100000 IGS_001 igs trnH|psbA trnH-psbA 78 518 0 441 LSC 0.004762 5 125 300 300 no 0.400000 3 0.666667 0.005744 1.000000 52.200000 psbA gene psbA psbA 519 1580 -1 1062 LSC 0.000377 1 0 26 60 no 0.200000 2 0.500000 0.000377 1.000000 31.000000 IGS_002 igs psbA|trnK psbA-trnK 1581 1852 0 272 LSC 0.004412 3 0 113 243 no 0.600000 4 0.750000 0.004412 1.000000 41.800000 trnK_part2 tRNA trnK trnK 1853 1887 -1 35 LSC 0.000000 0 0 107 208 no 0.000000 1 0.000000 0.000000 1.000000 26.800000 matK gene matK matK 2175 3692 -1 1518 LSC 0.001845 7 0 62 147 no 0.600000 4 0.750000 0.001845 1.000000 42.300000 IGS_005 igs matK|trnK matK-trnK 3693 4412 0 720 LSC 0.001111 2 0 157 63 no 0.400000 3 0.666667 0.001111 1.000000 38.100000 trnK_part1 tRNA trnK trnK 4413 4449 -1 37 LSC 0.000000 0 0 133 26 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_006 igs trnK|rps16 trnK-rps16 4450 5316 0 867 LSC 0.003691 8 21 170 63 yes 1.000000 5 1.000000 0.003748 1.000000 54.200000 rps16 gene rps16 rps16 5317 6448 -1 1132 LSC 0.001413 4 46 182 95 no 0.400000 3 0.666667 0.001451 1.000000 45.500000 IGS_007 igs rps16|trnQ rps16-trnQ 6449 8048 0 1600 LSC 0.001167 4 626 300 78 no 0.600000 4 0.750000 0.001362 1.000000 46.500000 trnQ tRNA trnQ trnQ 8049 8120 -1 72 LSC 0.000000 0 0 87 6 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_008 igs trnQ|psbK trnQ-psbK 8121 8475 0 355 LSC 0.001127 1 1 159 300 no 0.200000 3 0.333333 0.001128 1.000000 36.700000 psbK gene psbK psbK 8476 8661 1 186 LSC 0.000000 0 0 300 147 no 0.000000 1 0.000000 0.000000 1.000000 29.800000 IGS_009 igs psbK|psbI psbK-psbI 8662 9025 0 364 LSC 0.003846 3 0 300 118 no 0.600000 4 0.750000 0.003846 1.000000 42.900000 psbI gene psbI psbI 9026 9136 1 111 LSC 0.000000 0 0 54 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_010 igs psbI|trnS psbI-trnS 9137 9296 0 160 LSC 0.005000 2 0 165 125 no 0.200000 2 0.500000 0.005000 1.000000 35.700000 trnS tRNA trnS trnS 9297 9384 -1 88 LSC 0.000000 0 0 49 37 no 0.000000 1 0.000000 0.000000 1.000000 21.500000 IGS_011 igs trnS|trnG trnS-trnG 9385 10153 0 769 LSC 0.004681 9 210 137 77 yes 0.600000 4 0.750000 0.006148 1.000000 50.100000 trnG_part1 tRNA trnG trnG 10154 10176 1 23 LSC 0.000000 0 0 43 54 no 0.000000 1 0.000000 0.000000 1.000000 22.000000 trnG_part2 tRNA trnG trnG 10895 10943 1 49 LSC 0.000000 0 0 126 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_014 igs trnG|trnR trnG-trnR 10944 11088 0 145 LSC 0.005517 2 0 175 127 no 0.200000 2 0.500000 0.005517 1.000000 36.200000 trnR tRNA trnR trnR 11089 11160 1 72 LSC 0.000000 0 0 126 55 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 IGS_015 igs trnR|atpA trnR-atpA 11161 11352 0 192 LSC 0.007292 3 0 198 300 no 0.200000 3 0.333333 0.007292 1.000000 42.600000 atpA gene atpA atpA 11353 12870 -1 1518 LSC 0.000791 3 0 112 286 no 0.200000 2 0.500000 0.000791 1.000000 37.700000 IGS_016 igs atpA|atpF atpA-atpF 12871 12924 0 54 LSC 0.000000 0 0 86 232 no 0.000000 1 0.000000 0.000000 1.000000 25.200000 atpF gene atpF atpF 12925 14241 -1 1317 LSC 0.001822 6 2 140 36 no 1.000000 5 1.000000 0.001824 1.000000 48.000000 IGS_017 igs atpF|atpH atpF-atpH 14242 14720 0 479 LSC 0.005010 6 18 51 300 no 0.600000 4 0.750000 0.005157 1.000000 45.800000 atpH gene atpH atpH 14721 14966 -1 246 LSC 0.000000 0 0 35 300 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_018 igs atpH|atpI atpH-atpI 14967 16170 0 1204 LSC 0.000664 2 1 281 300 no 0.400000 3 0.666667 0.000665 1.000000 48.100000 atpI gene atpI atpI 16171 16914 -1 744 LSC 0.000000 0 0 300 270 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_019 igs atpI|rps2 atpI-rps2 16915 17143 0 229 LSC 0.000000 0 0 300 41 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 rps2 gene rps2 rps2 17144 17854 -1 711 LSC 0.001125 2 0 300 300 no 0.200000 2 0.500000 0.001125 1.000000 44.600000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 17855 18053 0 199 LSC 0.000000 0 1 258 143 no 0.200000 2 0.500000 0.000000 1.000000 33.800000 rpoC2 gene rpoC2 rpoC2 18054 22247 -1 4194 LSC 0.000811 8 0 300 300 yes 1.000000 5 1.000000 0.000811 1.000000 54.400000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 22248 22430 0 183 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpoC1 gene rpoC1 rpoC1 22431 25236 -1 2806 LSC 0.003136 15 57 300 300 yes 0.600000 4 0.750000 0.002584 0.998574 53.000000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 25237 25262 0 26 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpoB gene rpoB rpoB 25263 28475 -1 3213 LSC 0.000622 5 0 300 220 no 0.600000 4 0.750000 0.000622 1.000000 48.300000 IGS_023 igs rpoB|trnC rpoB-trnC 28476 29528 0 1053 LSC 0.000760 2 0 189 16 no 0.200000 2 0.500000 0.000760 1.000000 30.500000 trnC tRNA trnC trnC 29529 29599 1 71 LSC 0.008451 1 0 300 295 no 0.000000 2 0.000000 0.008451 1.000000 39.300000 IGS_024 igs trnC|petN trnC-petN 29600 30323 0 724 LSC 0.000552 1 153 54 148 no 0.400000 3 0.666667 0.000595 1.000000 41.900000 petN gene petN petN 30324 30413 1 90 LSC 0.000000 0 0 300 58 no 0.000000 1 0.000000 0.000000 1.000000 23.100000 IGS_025 igs petN|psbM petN-psbM 30414 31529 0 1116 LSC 0.002867 8 64 300 231 yes 0.600000 4 0.750000 0.002992 1.000000 59.200000 psbM gene psbM psbM 31530 31643 -1 114 LSC 0.000000 0 0 119 117 no 0.000000 1 0.000000 0.000000 1.000000 27.500000 IGS_026 igs psbM|trnD psbM-trnD 31644 32176 0 533 LSC 0.000750 1 1 233 177 no 0.200000 2 0.500000 0.000752 1.000000 41.400000 trnD tRNA trnD trnD 32177 32250 -1 74 LSC 0.000000 0 0 300 103 no 0.000000 1 0.000000 0.000000 1.000000 26.500000 IGS_027 igs trnD|trnY trnD-trnY 32251 32726 0 476 LSC 0.001681 2 0 300 259 no 0.400000 3 0.666667 0.001681 1.000000 46.200000 trnY tRNA trnY trnY 32727 32810 -1 84 LSC 0.000000 0 0 77 175 no 0.000000 1 0.000000 0.000000 1.000000 24.500000 IGS_028 igs trnY|trnE trnY-trnE 32811 32869 0 59 LSC 0.000000 0 0 161 116 no 0.000000 1 0.000000 0.000000 1.000000 27.400000 trnE tRNA trnE trnE 32870 32942 -1 73 LSC 0.000000 0 0 220 43 no 0.000000 1 0.000000 0.000000 1.000000 22.000000 IGS_029 igs trnE|trnT trnE-trnT 32943 33750 0 808 LSC 0.002475 5 0 293 300 yes 0.600000 4 0.750000 0.002475 1.000000 53.100000 trnT tRNA trnT trnT 33751 33822 1 72 LSC 0.000000 0 0 159 300 no 0.000000 1 0.000000 0.000000 1.000000 30.700000 IGS_030 igs trnT|psbD trnT-psbD 33823 35102 0 1280 LSC 0.002031 6 0 231 300 yes 0.600000 4 0.750000 0.002031 1.000000 52.800000 psbD gene psbD psbD 35103 36164 1 1062 LSC 0.000000 0 0 65 94 no 0.000000 1 0.000000 0.000000 1.000000 29.900000 psbC gene psbC psbC 36112 37533 1 1422 LSC 0.000281 1 0 300 152 no 0.200000 2 0.500000 0.000281 1.000000 40.400000 IGS_032 igs psbC|trnS psbC-trnS 37534 37771 0 238 LSC 0.004202 2 0 300 141 no 0.200000 3 0.333333 0.004202 1.000000 36.000000 trnS tRNA trnS trnS 37772 37864 -1 93 LSC 0.000000 0 0 15 48 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_033 igs trnS|psbZ trnS-psbZ 37865 38212 0 348 LSC 0.001149 1 0 108 226 no 0.200000 2 0.500000 0.001149 1.000000 32.500000 psbZ gene psbZ psbZ 38213 38401 1 189 LSC 0.000000 0 0 299 37 no 0.000000 1 0.000000 0.000000 1.000000 21.500000 IGS_034 igs psbZ|trnG psbZ-trnG 38402 38982 0 581 LSC 0.007241 10 40 300 300 yes 1.000000 5 1.000000 0.007577 0.998279 69.500000 IGS_035 igs trnG|trnM trnG-trnM 39054 39227 0 174 LSC 0.000000 0 0 171 300 no 0.000000 1 0.000000 0.000000 1.000000 31.600000 trnM tRNA trnM trnM 39228 39301 -1 74 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_036 igs trnM|rps14 trnM-rps14 39302 39463 0 162 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps14 gene rps14 rps14 39464 39766 -1 303 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_037 igs rps14|psaB rps14-psaB 39767 39909 0 143 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaB gene psaB psaB 39910 42114 -1 2205 LSC 0.000181 1 0 300 300 no 0.200000 2 0.500000 0.000181 1.000000 42.400000 IGS_038 igs psaB|psaA psaB-psaA 42115 42139 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 42140 44392 -1 2253 LSC 0.000266 1 0 300 300 no 0.000000 2 0.000000 0.000266 1.000000 38.600000 IGS_039 igs psaA|ycf3 psaA-ycf3 44393 45042 0 650 LSC 0.002769 4 0 29 37 no 0.600000 4 0.750000 0.002769 1.000000 40.400000 ycf3 gene ycf3 ycf3 45043 47085 -1 2043 LSC 0.003459 14 5 9 300 yes 1.000000 5 1.000000 0.003235 1.000000 46.000000 IGS_040 igs ycf3|trnS ycf3-trnS 47086 47966 0 881 LSC 0.000908 2 419 206 210 no 0.400000 3 0.666667 0.001114 1.000000 51.500000 trnS tRNA trnS trnS 47967 48053 1 87 LSC 0.000000 0 0 200 123 no 0.000000 1 0.000000 0.000000 1.000000 28.000000 IGS_041 igs trnS|rps4 trnS-rps4 48054 48354 0 301 LSC 0.002658 2 46 287 300 no 0.400000 3 0.666667 0.002957 1.000000 48.600000 rps4 gene rps4 rps4 48355 48960 -1 606 LSC 0.000660 1 0 104 300 no 0.200000 2 0.500000 0.000660 1.000000 37.100000 IGS_042 igs rps4|trnT rps4-trnT 48961 49321 0 361 LSC 0.001662 1 1 300 164 no 0.400000 3 0.666667 0.001664 1.000000 41.200000 trnT tRNA trnT trnT 49322 49394 -1 73 LSC 0.000000 0 0 33 91 no 0.000000 1 0.000000 0.000000 1.000000 21.200000 IGS_043 igs trnT|trnL trnT-trnL 49395 50373 0 979 LSC 0.002043 5 43 106 252 no 0.600000 4 0.750000 0.002122 1.000000 51.000000 trnL_part1 tRNA trnL trnL 50374 50408 1 35 LSC 0.000000 0 0 300 217 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnL_part2 tRNA trnL trnL 50937 50986 1 50 LSC 0.000000 0 0 300 8 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_046 igs trnL|trnF trnL-trnF 50987 51356 0 370 LSC 0.004324 4 0 300 300 no 0.400000 3 0.666667 0.004324 1.000000 46.000000 trnF tRNA trnF trnF 51357 51429 1 73 LSC 0.000000 0 0 203 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_047 igs trnF|ndhJ trnF-ndhJ 51430 51873 0 444 LSC 0.000000 0 0 276 300 no 0.000000 1 0.000000 0.000000 1.000000 36.800000 ndhJ gene ndhJ ndhJ 51874 52350 -1 477 LSC 0.000839 1 0 300 289 no 0.200000 2 0.500000 0.000839 1.000000 41.800000 IGS_048 igs ndhJ|ndhK ndhJ-ndhK 52351 52463 0 113 LSC 0.000000 0 0 122 176 no 0.000000 1 0.000000 0.000000 1.000000 27.900000 ndhK gene ndhK ndhK 52464 53147 -1 684 LSC 0.000585 1 0 235 17 no 0.200000 2 0.500000 0.000585 1.000000 30.500000 IGS_049 igs ndhK|ndhC ndhK-ndhC 53148 53204 0 57 LSC 0.007018 1 0 300 300 no 0.200000 2 0.500000 0.007018 1.000000 42.900000 ndhC gene ndhC ndhC 53205 53567 -1 363 LSC 0.000000 0 0 39 139 no 0.000000 1 0.000000 0.000000 1.000000 23.000000 IGS_050 igs ndhC|trnV ndhC-trnV 53568 54470 0 903 LSC 0.003987 9 0 300 300 yes 0.600000 4 0.750000 0.003987 1.000000 54.300000 trnV_part2 tRNA trnV trnV 54471 54507 -1 37 LSC 0.000000 0 0 214 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnV_part1 tRNA trnV trnV 55098 55136 -1 39 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_053 igs trnV|trnM trnV-trnM 55137 55326 0 190 LSC 0.000000 0 0 300 128 no 0.000000 1 0.000000 0.000000 1.000000 28.300000 trnM tRNA trnM trnM 55327 55399 1 73 LSC 0.000000 0 0 300 55 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 IGS_054 igs trnM|atpE trnM-atpE 55400 55651 0 252 LSC 0.004762 3 0 300 300 no 0.200000 2 0.500000 0.004762 1.000000 41.100000 atpE gene atpE atpE 55652 56053 -1 402 LSC 0.002488 2 0 41 300 no 0.400000 3 0.666667 0.002488 1.000000 33.200000 atpB gene atpB atpB 56050 57546 -1 1497 LSC 0.000000 0 0 49 6 no 0.000000 1 0.000000 0.000000 1.000000 25.400000 IGS_056 igs atpB|rbcL atpB-rbcL 57547 58327 0 781 LSC 0.001793 3 1 300 300 no 0.600000 4 0.750000 0.001794 0.998720 52.700000 rbcL gene rbcL rbcL 58328 59755 1 1428 LSC 0.001190 3 0 92 118 no 0.600000 4 0.750000 0.001190 1.000000 43.900000 IGS_057 igs rbcL|accD rbcL-accD 59756 60312 0 557 LSC 0.000727 1 7 300 300 no 0.400000 3 0.666667 0.000727 0.987433 48.300000 accD gene accD accD 60313 61788 1 1476 LSC 0.000271 1 0 300 300 no 0.200000 2 0.500000 0.000271 1.000000 44.000000 IGS_058 igs accD|psaI accD-psaI 61789 62523 0 735 LSC 0.000000 0 17 300 132 no 0.200000 2 0.500000 0.000000 1.000000 41.400000 psaI gene psaI psaI 62524 62637 1 114 LSC 0.000000 0 0 300 18 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_059 igs psaI|ycf4 psaI-ycf4 62638 63082 0 445 LSC 0.000899 1 19 300 300 no 0.400000 3 0.666667 0.000939 1.000000 49.800000 ycf4 gene ycf4 ycf4 63083 63637 1 555 LSC 0.000000 0 0 300 158 no 0.000000 1 0.000000 0.000000 1.000000 35.900000 IGS_060 igs ycf4|cemA ycf4-cemA 63638 64552 0 915 LSC 0.001532 3 362 300 300 yes 1.000000 5 1.000000 0.001380 0.998907 63.600000 cemA gene cemA cemA 64553 65251 1 699 LSC 0.000000 0 0 300 138 no 0.000000 1 0.000000 0.000000 1.000000 35.400000 IGS_061 igs cemA|petA cemA-petA 65252 65480 0 229 LSC 0.001747 1 0 300 300 no 0.200000 2 0.500000 0.001747 1.000000 38.800000 petA gene petA petA 65481 66443 1 963 LSC 0.000623 1 0 90 300 no 0.000000 2 0.000000 0.000623 1.000000 32.200000 IGS_062 igs petA|psbJ petA-psbJ 66444 67504 0 1061 LSC 0.004147 9 274 262 300 yes 0.400000 3 0.666667 0.002672 1.000000 55.100000 psbJ gene psbJ psbJ 67505 67627 -1 123 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_063 igs psbJ|psbL psbJ-psbL 67628 67769 0 142 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbL gene psbL psbL 67770 67886 -1 117 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_064 igs psbL|psbF psbL-psbF 67887 67908 0 22 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbF gene psbF psbF 67909 68028 -1 120 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_065 igs psbF|psbE psbF-psbE 68029 68037 0 9 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbE gene psbE psbE 68038 68289 -1 252 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_066 igs psbE|petL psbE-petL 68290 69562 0 1273 LSC 0.001965 6 3 300 300 yes 1.000000 5 1.000000 0.001811 0.998429 60.500000 petL gene petL petL 69563 69658 1 96 LSC 0.000000 0 0 300 217 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_067 igs petL|petG petL-petG 69659 69833 0 175 LSC 0.000000 0 0 300 42 no 0.000000 1 0.000000 0.000000 1.000000 21.900000 petG gene petG petG 69834 69947 1 114 LSC 0.003509 1 0 300 300 no 0.200000 2 0.500000 0.003509 1.000000 40.200000 IGS_068 igs petG|trnW petG-trnW 69948 70088 0 141 LSC 0.000000 0 0 71 300 no 0.000000 1 0.000000 0.000000 1.000000 24.100000 trnW tRNA trnW trnW 70089 70162 -1 74 LSC 0.000000 0 0 212 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_069 igs trnW|trnP trnW-trnP 70163 70332 0 170 LSC 0.000000 0 0 286 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnP tRNA trnP trnP 70333 70406 -1 74 LSC 0.000000 0 0 300 257 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_070 igs trnP|psaJ trnP-psaJ 70407 70762 0 356 LSC 0.002247 2 0 300 234 no 0.200000 2 0.500000 0.002247 1.000000 40.400000 psaJ gene psaJ psaJ 70763 70897 1 135 LSC 0.000000 0 0 2 99 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_071 igs psaJ|rpl33 psaJ-rpl33 70898 71347 0 450 LSC 0.002667 3 1 137 209 no 0.400000 3 0.666667 0.002671 1.000000 41.900000 rpl33 gene rpl33 rpl33 71348 71548 1 201 LSC 0.000000 0 0 0 8 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_072 igs rpl33|rps18 rpl33-rps18 71549 71745 0 197 LSC 0.004061 2 0 201 300 no 0.200000 2 0.500000 0.004061 1.000000 40.600000 rps18 gene rps18 rps18 71746 72051 1 306 LSC 0.000000 0 0 49 45 no 0.000000 1 0.000000 0.000000 1.000000 22.200000 IGS_073 igs rps18|rpl20 rps18-rpl20 72052 72283 0 232 LSC 0.003448 2 0 300 300 no 0.400000 3 0.666667 0.003448 1.000000 43.900000 rpl20 gene rpl20 rpl20 72284 72637 -1 354 LSC 0.000000 0 0 15 152 no 0.000000 1 0.000000 0.000000 1.000000 21.000000 IGS_074 igs rpl20|rps12 rpl20-rps12 72638 73390 0 753 LSC 0.001594 3 0 300 63 no 0.400000 3 0.666667 0.001594 1.000000 38.400000 rps12_part1 gene rps12 rps12 73391 73516 -1 126 LSC 0.003175 1 0 296 300 no 0.200000 2 0.500000 0.003175 1.000000 39.900000 IGS_075 igs rps12|clpP1 rps12-clpP1 73517 73688 0 172 LSC 0.000000 0 0 62 300 no 0.000000 1 0.000000 0.000000 1.000000 23.400000 clpP1 gene clpP1 clpP1 73689 75800 -1 2112 LSC 0.001423 7 12 234 300 yes 1.000000 5 1.000000 0.001427 0.997159 59.100000 IGS_076 igs clpP1|psbB clpP1-psbB 75801 76236 0 436 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 36.600000 psbB gene psbB psbB 76237 77763 1 1527 LSC 0.000524 2 0 300 300 no 0.400000 3 0.666667 0.000524 1.000000 47.800000 IGS_077 igs psbB|psbT psbB-psbT 77764 77948 0 185 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbT gene psbT psbT 77949 78056 1 108 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_078 igs psbT|psbN psbT-psbN 78057 78116 0 60 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbN gene psbN psbN 78117 78248 -1 132 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_079 igs psbN|psbH psbN-psbH 78249 78352 0 104 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbH gene psbH psbH 78353 78574 1 222 LSC 0.000000 0 0 300 245 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_080 igs psbH|petB psbH-petB 78575 78693 0 119 LSC 0.000000 0 0 300 126 no 0.000000 1 0.000000 0.000000 1.000000 28.200000 petB gene petB petB 78694 80148 1 1455 LSC 0.000825 3 0 300 1 no 0.600000 4 0.750000 0.000825 1.000000 37.000000 IGS_081 igs petB|petD petB-petD 80149 80357 0 209 LSC 0.003828 2 0 300 300 no 0.400000 3 0.666667 0.003828 1.000000 44.200000 petD gene petD petD 80358 81575 1 1218 LSC 0.000000 0 0 168 199 no 0.000000 1 0.000000 0.000000 1.000000 37.600000 IGS_082 igs petD|rpoA petD-rpoA 81576 81825 0 250 LSC 0.001600 1 0 300 300 no 0.200000 2 0.500000 0.001600 1.000000 38.700000 rpoA gene rpoA rpoA 81826 82809 -1 984 LSC 0.000407 1 0 50 47 no 0.200000 2 0.500000 0.000407 1.000000 32.600000 IGS_083 igs rpoA|rps11 rpoA-rps11 82810 82873 0 64 LSC 0.012500 2 0 300 300 no 0.400000 3 0.666667 0.012500 1.000000 50.800000 rps11 gene rps11 rps11 82874 83290 -1 417 LSC 0.000000 0 0 4 243 no 0.000000 1 0.000000 0.000000 1.000000 21.500000 IGS_084 igs rps11|rpl36 rps11-rpl36 83291 83407 0 117 LSC 0.000000 0 0 300 126 no 0.000000 1 0.000000 0.000000 1.000000 28.200000 rpl36 gene rpl36 rpl36 83408 83521 -1 114 LSC 0.000000 0 0 300 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_085 igs rpl36|rps8 rpl36-rps8 83522 84010 0 489 LSC 0.002863 3 14 300 159 no 0.600000 4 0.750000 0.002913 1.000000 51.100000 rps8 gene rps8 rps8 84011 84415 -1 405 LSC 0.000988 1 0 239 8 no 0.200000 2 0.500000 0.000988 1.000000 26.000000 IGS_086 igs rps8|rpl14 rps8-rpl14 84416 84577 0 162 LSC 0.006173 2 0 245 220 no 0.400000 3 0.666667 0.006173 1.000000 45.600000 rpl14 gene rpl14 rpl14 84578 84946 -1 369 LSC 0.001084 1 0 53 246 no 0.200000 2 0.500000 0.001084 1.000000 28.700000 IGS_087 igs rpl14|rpl16 rpl14-rpl16 84947 85072 0 126 LSC 0.000000 0 4 148 120 no 0.200000 2 0.500000 0.000000 1.000000 35.300000 rpl16 gene rpl16 rpl16 85073 86400 -1 1328 LSC 0.001205 4 75 274 300 yes 1.000000 5 1.000000 0.001236 1.000000 65.600000 IGS_088 igs rpl16|rps3 rpl16-rps3 86401 86548 0 148 LSC 0.000000 0 0 150 195 no 0.000000 1 0.000000 0.000000 1.000000 30.000000 rps3 gene rps3 rps3 86549 87208 -1 660 LSC 0.002121 3 0 298 214 yes 0.600000 4 0.750000 0.002121 1.000000 52.800000 rpl22 gene rpl22 rpl22 87193 87666 -1 474 LSC 0.012658 15 0 137 300 yes 0.200000 2 0.500000 0.012658 1.000000 46.100000 IGS_090 igs rpl22|rps19 rpl22-rps19 87667 87711 0 45 IRb 0.000000 0 0 223 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps19 gene rps19 rps19 87712 87990 -1 279 IRb 0.000000 0 0 268 57 no 0.000000 1 0.000000 0.000000 1.000000 23.000000 IGS_091 igs rps19|rpl2 rps19-rpl2 87991 88058 0 68 IRb 0.005882 1 0 300 300 no 0.200000 2 0.500000 0.005882 1.000000 42.000000 rpl2 gene rpl2 rpl2 88059 89567 -1 1509 IRb 0.000000 0 0 10 300 no 0.000000 1 0.000000 0.000000 1.000000 25.700000 IGS_092 igs rpl2|rpl23 rpl2-rpl23 89568 89585 0 18 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 89586 89867 -1 282 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_093 igs rpl23|trnI rpl23-trnI 89868 90032 0 165 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_094 igs trnI|ycf2 trnI-ycf2 90107 90194 0 88 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 90195 97070 1 6876 IRb 0.000116 2 0 300 300 no 0.200000 2 0.500000 0.000116 1.000000 37.600000 IGS_095 igs ycf2|trnL ycf2-trnL 97071 98079 0 1009 IRb 0.002379 4 0 300 300 no 0.000000 2 0.000000 0.002379 1.000000 41.600000 IGS_096 igs trnL|ndhB trnL-ndhB 98161 98748 0 588 IRb 0.000000 0 0 142 300 no 0.000000 1 0.000000 0.000000 1.000000 35.400000 ndhB gene ndhB ndhB 98749 100962 -1 2214 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 38.500000 IGS_097 igs ndhB|rps7 ndhB-rps7 100963 101284 0 322 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.200000 rps7 gene rps7 rps7 101285 101752 -1 468 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_098 igs rps7|rps12 rps7-rps12 101753 101805 0 53 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 101806 102599 -1 794 IRb 0.000000 0 0 300 164 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_099 igs rps12|trnV rps12-trnV 102600 104393 0 1794 IRb 0.000892 4 0 300 300 no 0.400000 3 0.666667 0.000892 1.000000 47.600000 IGS_100 igs trnV|rrn16S trnV-rrn16S 104466 104705 0 240 IRb 0.000000 0 0 76 300 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 rrn16S rRNA rrn16S rrn16S 104706 106196 1 1491 IRb 0.000268 1 0 300 55 no 0.200000 2 0.500000 0.000268 1.000000 33.100000 IGS_101 igs rrn16S|trnI rrn16S-trnI 106197 106490 0 294 IRb 0.002041 1 0 300 300 no 0.000000 2 0.000000 0.002041 1.000000 35.100000 trnI_part1 tRNA trnI trnI 106491 106532 1 42 IRb 0.000000 0 0 238 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 107487 107521 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_104 igs trnI|trnA trnI-trnA 107522 107591 0 70 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 107592 107629 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 108470 108504 1 35 IRb 0.000000 0 0 20 300 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_107 igs trnA|rrn23S trnA-rrn23S 108505 108667 0 163 IRb 0.000000 0 0 55 300 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 rrn23S rRNA rrn23S rrn23S 108668 111477 1 2810 IRb 0.000142 1 0 218 300 no 0.200000 2 0.500000 0.000142 1.000000 41.100000 IGS_108 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 111478 111575 0 98 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 111576 111678 1 103 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_109 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 111679 111923 0 245 IRb 0.000000 0 23 300 300 no 0.200000 2 0.500000 0.000000 1.000000 43.200000 rrn5S rRNA rrn5S rrn5S 111924 112044 1 121 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_110 igs rrn5S|trnR rrn5S-trnR 112045 112294 0 250 IRb 0.000000 0 0 300 190 no 0.000000 1 0.000000 0.000000 1.000000 33.000000 trnR tRNA trnR trnR 112295 112368 1 74 IRb 0.000000 0 0 300 116 no 0.000000 1 0.000000 0.000000 1.000000 27.400000 IGS_111 igs trnR|trnN trnR-trnN 112369 112986 0 618 IRb 0.002913 4 0 300 300 no 0.200000 3 0.333333 0.002913 1.000000 45.900000 trnN tRNA trnN trnN 112987 113058 -1 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_112 igs trnN|ycf1 trnN-ycf1 113059 113393 0 335 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.500000 ycf1 gene ycf1 ycf1 113394 114536 1 1143 IRb 0.000000 0 83 300 300 no 0.200000 2 0.500000 0.000000 1.000000 49.500000 ndhF gene ndhF ndhF 114470 116698 -1 2229 SSC 0.001166 5 0 300 300 no 0.200000 3 0.333333 0.001166 1.000000 43.000000 IGS_114 igs ndhF|rpl32 ndhF-rpl32 116699 117705 0 1007 SSC 0.001589 4 60 300 142 yes 1.000000 5 1.000000 0.001653 0.998014 61.400000 rpl32 gene rpl32 rpl32 117706 117858 1 153 SSC 0.002614 1 0 7 9 no 0.200000 2 0.500000 0.002614 1.000000 25.000000 IGS_115 igs rpl32|trnL rpl32-trnL 117859 118953 0 1095 SSC 0.003105 8 2 10 80 yes 0.600000 4 0.750000 0.003108 1.000000 39.500000 IGS_116 igs trnL|ccsA trnL-ccsA 119034 119141 0 108 SSC 0.011429 3 3 149 300 no 0.400000 3 0.666667 0.011429 0.972222 48.500000 ccsA gene ccsA ccsA 119142 120101 1 960 SSC 0.000833 2 0 20 156 no 0.200000 2 0.500000 0.000833 1.000000 30.900000 IGS_117 igs ccsA|ndhD ccsA-ndhD 120102 120407 0 306 SSC 0.003268 2 2 300 252 no 0.200000 3 0.333333 0.003281 1.000000 40.700000 ndhD gene ndhD ndhD 120408 121934 -1 1527 SSC 0.001179 4 0 136 138 no 0.600000 4 0.750000 0.001179 1.000000 47.300000 IGS_118 igs ndhD|psaC ndhD-psaC 121935 122071 0 137 SSC 0.000000 0 0 152 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 psaC gene psaC psaC 122072 122317 -1 246 SSC 0.001626 1 0 289 300 no 0.200000 2 0.500000 0.001626 1.000000 38.700000 IGS_119 igs psaC|ndhE psaC-ndhE 122318 122550 0 233 SSC 0.000000 0 7 244 109 no 0.200000 2 0.500000 0.000000 1.000000 34.200000 ndhE gene ndhE ndhE 122551 122856 -1 306 SSC 0.001307 1 0 300 132 no 0.200000 2 0.500000 0.001307 1.000000 33.500000 IGS_120 igs ndhE|ndhG ndhE-ndhG 122857 123114 0 258 SSC 0.004651 3 0 196 300 no 0.400000 3 0.666667 0.004651 1.000000 44.500000 ndhG gene ndhG ndhG 123115 123651 -1 537 SSC 0.000000 0 0 34 300 no 0.000000 1 0.000000 0.000000 1.000000 26.200000 IGS_121 igs ndhG|ndhI ndhG-ndhI 123652 123837 0 186 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ndhI gene ndhI ndhI 123838 124341 -1 504 SSC 0.000000 0 0 300 61 no 0.000000 1 0.000000 0.000000 1.000000 27.600000 IGS_122 igs ndhI|ndhA ndhI-ndhA 124342 124426 0 85 SSC 0.004706 1 4 300 231 no 0.200000 2 0.500000 0.004938 1.000000 46.700000 ndhA gene ndhA ndhA 124427 126618 -1 2192 SSC 0.000912 5 11 23 287 no 0.600000 4 0.750000 0.000915 1.000000 37.800000 IGS_123 igs ndhA|ndhH ndhA-ndhH 126619 126619 0 1 SSC 0.000000 0 0 50 286 no 0.000000 1 0.000000 NA 1.000000 22.500000 ndhH gene ndhH ndhH 126620 127801 -1 1182 SSC 0.001015 3 0 51 11 no 0.400000 3 0.666667 0.001015 1.000000 34.100000 IGS_124 igs ndhH|rps15 ndhH-rps15 127802 127895 0 94 SSC 0.004255 1 0 178 300 no 0.200000 2 0.500000 0.004255 1.000000 39.100000 rps15 gene rps15 rps15 127896 128168 -1 273 SSC 0.000000 0 0 82 142 no 0.000000 1 0.000000 0.000000 1.000000 24.900000 IGS_125 igs rps15|ycf1 rps15-ycf1 128169 128525 0 357 SSC 0.001130 1 6 300 12 no 1.000000 5 1.000000 0.001136 0.988796 42.100000 ycf1 gene ycf1 ycf1 128526 133892 -1 5367 SSC 0.001081 14 0 214 300 no 0.600000 4 0.750000 0.001081 1.000000 45.800000 IGS_126 igs ycf1|trnN ycf1-trnN 133893 134227 0 335 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.500000 trnN tRNA trnN trnN 134228 134299 1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_127 igs trnN|trnR trnN-trnR 134300 134917 0 618 IRa 0.002265 3 0 300 300 no 0.200000 3 0.333333 0.002265 1.000000 45.400000 trnR tRNA trnR trnR 134918 134991 -1 74 IRa 0.000000 0 0 116 300 no 0.000000 1 0.000000 0.000000 1.000000 27.400000 IGS_128 igs trnR|rrn5S trnR-rrn5S 134992 135241 0 250 IRa 0.000000 0 0 190 300 no 0.000000 1 0.000000 0.000000 1.000000 33.000000 rrn5S rRNA rrn5S rrn5S 135242 135362 -1 121 IRa 0.000000 0 0 300 231 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_129 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 135363 135607 0 245 IRa 0.003265 2 20 300 300 no 0.200000 2 0.500000 0.003556 1.000000 45.700000 rrn4.5S rRNA rrn4.5S rrn4.5S 135608 135710 -1 103 IRa 0.000000 0 0 12 300 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_130 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 135711 135808 0 98 IRa 0.000000 0 0 115 300 no 0.000000 1 0.000000 0.000000 1.000000 27.400000 rrn23S rRNA rrn23S rrn23S 135809 138618 -1 2810 IRa 0.000142 1 0 213 218 no 0.200000 2 0.500000 0.000142 1.000000 41.100000 IGS_131 igs rrn23S|trnA rrn23S-trnA 138619 138781 0 163 IRa 0.000000 0 0 300 55 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 trnA_part2 tRNA trnA trnA 138782 138816 -1 35 IRa 0.000000 0 0 300 20 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 trnA_part1 tRNA trnA trnA 139657 139694 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_134 igs trnA|trnI trnA-trnI 139695 139764 0 70 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 139765 139799 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 140754 140795 -1 42 IRa 0.000000 0 0 300 238 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_137 igs trnI|rrn16S trnI-rrn16S 140796 141089 0 294 IRa 0.002041 1 0 300 300 no 0.000000 2 0.000000 0.002041 1.000000 35.100000 rrn16S rRNA rrn16S rrn16S 141090 142580 -1 1491 IRa 0.000268 1 0 55 300 no 0.200000 2 0.500000 0.000268 1.000000 33.100000 IGS_138 igs rrn16S|trnV rrn16S-trnV 142581 142820 0 240 IRa 0.000000 0 0 300 76 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 IGS_139 igs trnV|rps12 trnV-rps12 142893 144686 0 1794 IRa 0.000892 4 0 300 300 no 0.400000 3 0.666667 0.000892 1.000000 47.600000 rps12_part2 gene rps12 rps12 144687 145480 1 794 IRa 0.000000 0 0 164 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_140 igs rps12|rps7 rps12-rps7 145481 145533 0 53 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 145534 146001 1 468 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_141 igs rps7|ndhB rps7-ndhB 146002 146323 0 322 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.200000 ndhB gene ndhB ndhB 146324 148537 1 2214 IRa 0.000181 1 0 300 300 no 0.200000 2 0.500000 0.000181 1.000000 42.400000 IGS_142 igs ndhB|trnL ndhB-trnL 148538 149125 0 588 IRa 0.000000 0 0 300 142 no 0.000000 1 0.000000 0.000000 1.000000 35.400000 IGS_143 igs trnL|ycf2 trnL-ycf2 149207 150215 0 1009 IRa 0.002379 4 0 300 300 no 0.000000 2 0.000000 0.002379 1.000000 41.600000 ycf2 gene ycf2 ycf2 150216 157091 -1 6876 IRa 0.000116 2 0 300 300 no 0.200000 2 0.500000 0.000116 1.000000 37.600000 IGS_144 igs ycf2|trnI ycf2-trnI 157092 157179 0 88 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_145 igs trnI|rpl23 trnI-rpl23 157254 157418 0 165 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 157419 157700 1 282 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_146 igs rpl23|rpl2 rpl23-rpl2 157701 157718 0 18 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 157719 159227 1 1509 IRa 0.000000 0 0 300 10 no 0.000000 1 0.000000 0.000000 1.000000 25.700000 IGS_147 igs rpl2|rps19 rpl2-rps19 159228 159295 0 68 IRa 0.005882 1 0 300 300 no 0.200000 2 0.500000 0.005882 1.000000 42.000000 rps19 gene rps19 rps19 159296 159574 1 279 IRa 0.000000 0 0 57 300 no 0.000000 1 0.000000 0.000000 1.000000 23.000000 IGS_148 igs rps19|trnH rps19-trnH 159575 2 0 269 IRa 0.000000 0 1 300 128 no 0.200000 2 0.500000 0.000000 1.000000 32.500000