feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnN-GUU tRNA trnN-GUU trnN-GUU 1494 1565 1 72 IRb NA 0 72 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 IGS_001 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 1566 2169 0 604 IRb NA 0 604 300 300 no 0.333333 2 0.500000 NA 0.000000 33.800000 trnR-ACG tRNA trnR-ACG trnR-ACG 2170 2243 -1 74 IRb NA 0 74 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 IGS_002 igs trnR-ACG|rrn5S trnR-ACG-rrn5S 2244 2502 0 259 IRb NA 0 259 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 rrn5S rRNA rrn5S rrn5S 2503 2620 -1 118 IRb NA 0 118 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 IGS_003 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 2621 2876 0 256 IRb NA 0 256 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 rrn4.5S rRNA rrn4.5S rrn4.5S 2877 2979 -1 103 IRb NA 0 103 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 IGS_004 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 2980 3077 0 98 IRb NA 0 98 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 rrn23S rRNA rrn23S rrn23S 3078 5886 -1 2809 IRb NA 0 2809 300 300 no 0.333333 2 0.500000 NA 0.000000 31.000000 IGS_005 igs rrn23S|trnA-UGC rrn23S-trnA-UGC 5887 6045 0 159 IRb NA 0 159 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 6046 6080 -1 35 IRb NA 0 35 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 6883 6920 -1 38 IRb NA 0 38 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 IGS_008 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 6921 6984 0 64 IRb NA 0 64 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 6985 7019 -1 35 IRb NA 0 35 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 7970 8011 -1 42 IRb NA 0 42 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 IGS_011 igs trnI-GAU|rrn16S trnI-GAU-rrn16S 8012 8307 0 296 IRb NA 0 296 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 rrn16S rRNA rrn16S rrn16S 8308 9798 -1 1491 IRb NA 0 1491 300 300 no 0.333333 2 0.500000 NA 0.000000 33.800000 IGS_012 igs rrn16S|trnV-GAC rrn16S-trnV-GAC 9799 10053 0 255 IRb NA 0 255 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 trnV-GAC tRNA trnV-GAC trnV-GAC 10054 10125 -1 72 IRb NA 0 72 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 IGS_013 igs trnV-GAC|rps12 trnV-GAC-rps12 10126 11856 0 1731 IRb NA 0 1731 300 300 no 0.333333 2 0.500000 NA 0.000000 33.300000 rps12_part2 gene rps12 rps12 11857 12650 1 794 IRb NA 0 794 300 300 no 0.333333 2 0.500000 NA 0.000000 33.800000 IGS_014 igs rps12|rps7 rps12-rps7 12651 12703 0 53 IRb NA 0 53 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 rps7 gene rps7 rps7 12704 13171 1 468 IRb NA 0 468 300 300 no 0.333333 2 0.500000 NA 0.000000 31.000000 IGS_015 igs rps7|ndhB rps7-ndhB 13172 13493 0 322 IRb NA 0 322 300 300 no 0.333333 2 0.500000 NA 0.000000 28.000000 ndhB gene ndhB ndhB 13494 15706 1 2213 IRb NA 0 2213 300 300 no 0.333333 2 0.500000 NA 0.000000 32.300000 IGS_016 igs ndhB|trnL-CAA ndhB-trnL-CAA 15707 16291 0 585 IRb NA 0 585 300 300 no 0.333333 2 0.500000 NA 0.000000 33.400000 trnL-CAA tRNA trnL-CAA trnL-CAA 16292 16372 1 81 IRb NA 0 81 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 IGS_017 igs trnL-CAA|ycf2 trnL-CAA-ycf2 16373 17326 0 954 IRb NA 0 954 300 300 no 0.333333 2 0.500000 NA 0.000000 33.800000 ycf2 gene ycf2 ycf2 17327 24232 -1 6906 IRb NA 0 6906 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 IGS_018 igs ycf2|trnI-CAU ycf2-trnI-CAU 24233 24320 0 88 IRb NA 0 88 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 trnI-CAU tRNA trnI-CAU trnI-CAU 24321 24394 1 74 IRb NA 0 74 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 IGS_019 igs trnI-CAU|rpl23 trnI-CAU-rpl23 24395 24564 0 170 IRb NA 0 170 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 rpl23 gene rpl23 rpl23 24565 24846 1 282 IRb NA 0 282 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 IGS_020 igs rpl23|rpl2 rpl23-rpl2 24847 24864 0 18 IRb NA 0 18 300 300 no 0.333333 2 0.500000 NA 0.000000 27.500000 rpl2 gene rpl2 rpl2 24865 26385 1 1521 IRb NA 0 1521 300 181 yes 0.333333 2 0.500000 NA 0.000000 32.300000 IGS_021 igs rpl2|trnH-GUG rpl2-trnH-GUG 26386 26670 0 285 IRb 0.022436 3 188 300 87 no 1.000000 3 1.000000 0.017077 0.364912 47.500000 trnH-GUG tRNA trnH-GUG trnH-GUG 26671 26744 -1 74 LSC 0.000000 0 0 43 13 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_022 igs trnH-GUG|psbA trnH-GUG-psbA 26745 26975 0 231 LSC 0.014430 5 2 117 300 no 0.333333 2 0.500000 0.014556 1.000000 44.000000 psbA gene psbA psbA 26976 28037 -1 1062 LSC 0.000000 0 0 101 189 no 0.000000 1 0.000000 0.000000 1.000000 32.600000 IGS_023 igs psbA|trnK-UUU psbA-trnK-UUU 28038 28317 0 280 LSC 0.004762 2 13 300 174 no 0.333333 2 0.500000 0.004994 1.000000 46.400000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 28318 28352 -1 35 LSC 0.000000 0 0 24 139 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 matK gene matK matK 28630 30150 -1 1521 LSC 0.000877 2 0 60 300 no 0.333333 2 0.500000 0.000877 1.000000 36.300000 IGS_026 igs matK|trnK-UUU matK-trnK-UUU 30151 30900 0 750 LSC 0.000000 0 3 300 213 yes 1.000000 3 1.000000 0.000000 0.998667 59.200000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 30901 30937 -1 37 LSC 0.000000 0 0 300 176 no 0.000000 1 0.000000 0.000000 1.000000 31.900000 IGS_027 igs trnK-UUU|rps16 trnK-UUU-rps16 30938 31725 0 788 LSC 0.000846 1 5 300 300 no 0.333333 2 0.500000 0.000851 1.000000 47.500000 rps16 gene rps16 rps16 31726 32891 -1 1166 LSC 0.000572 1 7 300 232 no 0.333333 2 0.500000 0.000575 1.000000 47.300000 IGS_028 igs rps16|trnQ-UUG rps16-trnQ-UUG 32892 33814 0 923 LSC 0.001445 2 15 300 300 yes 0.333333 2 0.500000 0.001468 1.000000 49.000000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 33815 33886 -1 72 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_029 igs trnQ-UUG|psbK trnQ-UUG-psbK 33887 34252 0 366 LSC 0.000000 0 0 300 80 no 0.000000 1 0.000000 0.000000 1.000000 26.100000 psbK gene psbK psbK 34253 34438 1 186 LSC 0.003584 1 0 300 300 no 0.333333 2 0.500000 0.003584 1.000000 42.300000 IGS_030 igs psbK|psbI psbK-psbI 34439 34582 0 144 LSC 0.000000 0 0 105 188 no 0.000000 1 0.000000 0.000000 1.000000 26.600000 psbI gene psbI psbI 34583 34693 1 111 LSC 0.000000 0 0 249 77 no 0.000000 1 0.000000 0.000000 1.000000 24.500000 IGS_031 igs psbI|trnS-GCU psbI-trnS-GCU 34694 34811 0 118 LSC 0.005650 1 0 300 165 no 0.333333 2 0.500000 0.005650 1.000000 41.000000 trnS-GCU tRNA trnS-GCU trnS-GCU 34812 34899 -1 88 LSC 0.000000 0 0 40 77 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_032 igs trnS-GCU|trnR-UCU trnS-GCU-trnR-UCU 34900 37655 0 2756 LSC 0.007015 29 63 128 275 yes 0.333333 2 0.500000 0.007179 1.000000 45.300000 trnR-UCU tRNA trnR-UCU trnR-UCU 37656 37727 1 72 LSC 0.000000 0 0 122 203 no 0.000000 1 0.000000 0.000000 1.000000 27.900000 IGS_033 igs trnR-UCU|atpA trnR-UCU-atpA 37728 38215 0 488 LSC 0.008197 6 2 194 300 yes 0.333333 2 0.500000 0.008230 1.000000 49.200000 atpA gene atpA atpA 38216 39739 -1 1524 LSC 0.001312 3 0 6 300 no 0.333333 2 0.500000 0.001312 1.000000 32.500000 IGS_034 igs atpA|atpH atpA-atpH 39740 41542 0 1803 LSC 0.000740 2 6 300 300 yes 1.000000 3 1.000000 0.000742 0.999445 59.000000 atpH gene atpH atpH 41543 41788 -1 246 LSC 0.000000 0 0 300 225 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_035 igs atpH|atpI atpH-atpI 41789 42857 0 1069 LSC 0.003742 6 9 300 300 yes 0.333333 2 0.500000 0.003774 1.000000 49.600000 atpI gene atpI atpI 42858 43601 -1 744 LSC 0.000000 0 0 37 300 no 0.000000 1 0.000000 0.000000 1.000000 27.800000 IGS_036 igs atpI|rps2 atpI-rps2 43602 43816 0 215 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps2 gene rps2 rps2 43817 44527 -1 711 LSC 0.000938 1 0 300 3 no 0.333333 2 0.500000 0.000938 1.000000 32.100000 IGS_037 igs rps2|rpoC2 rps2-rpoC2 44528 44767 0 240 LSC 0.005556 2 9 113 300 no 0.333333 2 0.500000 0.005772 1.000000 41.300000 rpoC2 gene rpoC2 rpoC2 44768 48943 -1 4176 LSC 0.001596 10 0 231 300 no 0.333333 2 0.500000 0.001596 1.000000 42.300000 IGS_038 igs rpoC2|rpoC1 rpoC2-rpoC1 48944 49108 0 165 LSC 0.000000 0 0 300 276 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpoC1 gene rpoC1 rpoC1 49109 51922 -1 2814 LSC 0.001421 6 1 300 300 no 0.333333 2 0.500000 0.001422 1.000000 44.500000 IGS_039 igs rpoC1|rpoB rpoC1-rpoB 51923 51948 0 26 LSC 0.000000 0 0 10 300 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 rpoB gene rpoB rpoB 51949 55161 -1 3213 LSC 0.000415 2 0 36 127 no 0.333333 2 0.500000 0.000415 1.000000 30.800000 IGS_040 igs rpoB|trnC-GCA rpoB-trnC-GCA 55162 56211 0 1050 LSC 0.001905 3 2 300 211 no 0.333333 2 0.500000 0.001908 1.000000 47.700000 trnC-GCA tRNA trnC-GCA trnC-GCA 56212 56282 1 71 LSC 0.000000 0 0 95 140 no 0.000000 1 0.000000 0.000000 1.000000 25.900000 IGS_041 igs trnC-GCA|petN trnC-GCA-petN 56283 57343 0 1061 LSC 0.001885 3 16 166 300 no 0.333333 2 0.500000 0.001914 1.000000 46.600000 petN gene petN petN 57344 57433 1 90 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_042 igs petN|psbM petN-psbM 57434 58660 0 1227 LSC 0.002173 4 0 300 300 no 0.333333 2 0.500000 0.002173 1.000000 47.600000 psbM gene psbM psbM 58661 58765 -1 105 LSC 0.000000 0 0 46 300 no 0.000000 1 0.000000 0.000000 1.000000 22.200000 IGS_043 igs psbM|trnD-GUC psbM-trnD-GUC 58766 59304 0 539 LSC 0.000000 0 0 151 300 no 0.000000 1 0.000000 0.000000 1.000000 35.100000 trnD-GUC tRNA trnD-GUC trnD-GUC 59305 59378 -1 74 LSC 0.000000 0 0 300 294 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_044 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 59379 59875 0 497 LSC 0.001341 1 0 300 300 no 0.333333 2 0.500000 0.001341 1.000000 45.000000 trnY-GUA tRNA trnY-GUA trnY-GUA 59876 59959 -1 84 LSC 0.000000 0 0 202 228 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_045 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 59960 60018 0 59 LSC 0.000000 0 0 286 169 no 0.000000 1 0.000000 0.000000 1.000000 31.400000 trnE-UUC tRNA trnE-UUC trnE-UUC 60019 60091 -1 73 LSC 0.000000 0 0 300 96 no 0.000000 1 0.000000 0.000000 1.000000 25.900000 IGS_046 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 60092 60781 0 690 LSC 0.001932 2 2 300 300 yes 1.000000 3 1.000000 0.001937 1.000000 60.300000 trnT-GGU tRNA trnT-GGU trnT-GGU 60782 60853 1 72 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_047 igs trnT-GGU|psbD trnT-GGU-psbD 60854 62220 0 1367 LSC 0.000488 1 4 300 300 no 0.333333 2 0.500000 0.000489 1.000000 46.900000 psbD gene psbD psbD 62221 63282 1 1062 LSC 0.001255 2 0 221 300 no 0.333333 2 0.500000 0.001255 1.000000 47.100000 IGS_048 igs psbD|trnS-UGA psbD-trnS-UGA 63283 64909 0 1627 LSC 0.000820 2 5 144 300 no 0.333333 2 0.500000 0.000822 1.000000 42.700000 trnS-UGA tRNA trnS-UGA trnS-UGA 64910 65002 -1 93 LSC 0.000000 0 0 144 264 no 0.000000 1 0.000000 0.000000 1.000000 29.500000 IGS_049 igs trnS-UGA|psbZ trnS-UGA-psbZ 65003 65337 0 335 LSC 0.005970 3 3 237 300 no 0.333333 2 0.500000 0.006024 1.000000 45.600000 psbZ gene psbZ psbZ 65338 65526 1 189 LSC 0.000000 0 0 64 300 no 0.000000 1 0.000000 0.000000 1.000000 23.500000 IGS_050 igs psbZ|trnG-GCC psbZ-trnG-GCC 65527 66090 0 564 LSC 0.002364 2 8 253 171 no 0.333333 2 0.500000 0.002398 1.000000 46.500000 trnG-GCC tRNA trnG-GCC trnG-GCC 66091 66161 1 71 LSC 0.000000 0 0 141 100 no 0.000000 1 0.000000 0.000000 1.000000 26.200000 IGS_051 igs trnG-GCC|trnM-CAU trnG-GCC-trnM-CAU 66162 66342 0 181 LSC 0.003683 1 1 212 300 no 0.333333 2 0.500000 0.003704 1.000000 43.000000 trnM-CAU tRNA trnM-CAU trnM-CAU 66343 66416 -1 74 LSC 0.000000 0 0 80 300 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_052 igs trnM-CAU|rps14 trnM-CAU-rps14 66417 66578 0 162 LSC 0.000000 0 0 154 138 no 0.000000 1 0.000000 0.000000 1.000000 29.100000 rps14 gene rps14 rps14 66579 66881 -1 303 LSC 0.002200 1 0 300 300 no 0.333333 2 0.500000 0.002200 1.000000 41.500000 IGS_053 igs rps14|psaB rps14-psaB 66882 67012 0 131 LSC 0.000000 0 0 164 300 no 0.000000 1 0.000000 0.000000 1.000000 31.100000 psaB gene psaB psaB 67013 69217 -1 2205 LSC 0.000907 3 0 295 300 no 0.333333 2 0.500000 0.000907 1.000000 45.400000 IGS_054 igs psaB|psaA psaB-psaA 69218 69242 0 25 LSC 0.000000 0 0 281 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 69243 71495 -1 2253 LSC 0.001480 5 0 300 300 no 0.333333 2 0.500000 0.001480 1.000000 45.600000 IGS_055 igs psaA|ycf3 psaA-ycf3 71496 72217 0 722 LSC 0.000923 1 7 300 300 no 0.333333 2 0.500000 0.000932 1.000000 47.900000 ycf3 gene ycf3 ycf3 72218 74350 -1 2133 LSC 0.000938 3 0 7 73 no 0.333333 2 0.500000 0.000938 1.000000 31.100000 IGS_056 igs ycf3|trnS-GGA ycf3-trnS-GGA 74351 75249 0 899 LSC 0.000742 1 11 213 300 no 0.333333 2 0.500000 0.000751 1.000000 48.100000 trnS-GGA tRNA trnS-GGA trnS-GGA 75250 75336 1 87 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_057 igs trnS-GGA|rps4 trnS-GGA-rps4 75337 75626 0 290 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps4 gene rps4 rps4 75627 76232 -1 606 LSC 0.001100 1 0 300 300 no 0.333333 2 0.500000 0.001100 1.000000 47.000000 IGS_058 igs rps4|trnT-UGU rps4-trnT-UGU 76233 76862 0 630 LSC 0.003175 3 72 241 300 yes 0.333333 2 0.500000 0.003584 1.000000 53.300000 trnT-UGU tRNA trnT-UGU trnT-UGU 76863 76935 -1 73 LSC 0.000000 0 0 8 300 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_059 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 76936 77869 0 934 LSC 0.000714 1 6 81 300 no 0.333333 2 0.500000 0.000718 1.000000 38.500000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 77870 77904 1 35 LSC 0.000000 0 0 31 300 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 78425 78474 1 50 LSC 0.000000 0 0 154 300 no 0.000000 1 0.000000 0.000000 1.000000 30.300000 IGS_062 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 78475 78814 0 340 LSC 0.000000 0 80 204 213 no 0.333333 2 0.500000 0.000000 1.000000 44.600000 trnF-GAA tRNA trnF-GAA trnF-GAA 78815 78887 1 73 LSC 0.000000 0 0 300 140 no 0.000000 1 0.000000 0.000000 1.000000 29.200000 IGS_063 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 78888 79579 0 692 LSC 0.002890 3 14 300 300 yes 1.000000 3 1.000000 0.002940 1.000000 62.900000 ndhJ gene ndhJ ndhJ 79580 80056 -1 477 LSC 0.000000 0 0 149 300 no 0.000000 1 0.000000 0.000000 1.000000 33.600000 IGS_064 igs ndhJ|ndhK ndhJ-ndhK 80057 80202 0 146 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ndhK gene ndhK ndhK 80203 80883 -1 681 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_065 igs ndhK|ndhC ndhK-ndhC 80884 80933 0 50 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ndhC gene ndhC ndhC 80934 81296 -1 363 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 35.100000 IGS_066 igs ndhC|trnM-CAU ndhC-trnM-CAU 81297 82786 0 1490 LSC 0.000895 2 0 300 284 no 0.333333 2 0.500000 0.000895 1.000000 46.800000 trnM-CAU tRNA trnM-CAU trnM-CAU 82787 82859 1 73 LSC 0.000000 0 0 300 211 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_067 igs trnM-CAU|atpE trnM-CAU-atpE 82860 83116 0 257 LSC 0.002594 1 0 300 300 no 0.333333 2 0.500000 0.002594 1.000000 41.700000 atpE gene atpE atpE 83117 83518 -1 402 LSC 0.000000 0 0 45 83 no 0.000000 1 0.000000 0.000000 1.000000 24.200000 atpB gene atpB atpB 83515 85011 -1 1497 LSC 0.002227 5 0 300 214 no 0.333333 2 0.500000 0.002227 1.000000 47.700000 IGS_069 igs atpB|rbcL atpB-rbcL 85012 85893 0 882 LSC 0.003023 4 0 300 300 yes 0.333333 2 0.500000 0.003023 1.000000 48.200000 rbcL gene rbcL rbcL 85894 87321 1 1428 LSC 0.000467 1 0 300 300 no 0.333333 2 0.500000 0.000467 1.000000 46.500000 IGS_070 igs rbcL|accD rbcL-accD 87322 88081 0 760 LSC 0.001754 2 3 300 155 no 0.333333 2 0.500000 0.001761 1.000000 44.400000 accD gene accD accD 88082 89797 1 1716 LSC 0.001554 4 0 249 4 yes 0.333333 2 0.500000 0.001554 1.000000 32.100000 IGS_071 igs accD|psaI accD-psaI 89798 90699 0 902 LSC 0.003695 5 27 279 238 yes 0.333333 2 0.500000 0.003810 1.000000 52.000000 psaI gene psaI psaI 90700 90813 1 114 LSC 0.000000 0 0 279 124 no 0.000000 1 0.000000 0.000000 1.000000 28.000000 IGS_072 igs psaI|ycf4 psaI-ycf4 90814 91229 0 416 LSC 0.001603 1 0 300 300 no 0.333333 2 0.500000 0.001603 1.000000 43.400000 ycf4 gene ycf4 ycf4 91230 91784 1 555 LSC 0.000000 0 0 291 300 no 0.000000 1 0.000000 0.000000 1.000000 39.100000 IGS_073 igs ycf4|cemA ycf4-cemA 91785 92209 0 425 LSC 0.000000 0 10 300 163 no 0.333333 2 0.500000 0.000000 1.000000 42.500000 cemA gene cemA cemA 92210 92899 1 690 LSC 0.000966 1 0 300 300 no 0.333333 2 0.500000 0.000966 1.000000 46.900000 IGS_074 igs cemA|petA cemA-petA 92900 93107 0 208 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 petA gene petA petA 93108 94070 1 963 LSC 0.000692 1 0 300 300 no 0.333333 2 0.500000 0.000692 1.000000 46.700000 IGS_075 igs petA|psbJ petA-psbJ 94071 94853 0 783 LSC 0.000851 1 2 300 150 no 0.333333 2 0.500000 0.000854 1.000000 43.300000 psbJ gene psbJ psbJ 94854 94976 -1 123 LSC 0.000000 0 0 55 27 no 0.000000 1 0.000000 0.000000 1.000000 20.800000 IGS_076 igs psbJ|psbF psbJ-psbF 94977 95249 0 273 LSC 0.002442 1 0 178 194 no 0.333333 2 0.500000 0.002442 1.000000 39.900000 psbF gene psbF psbF 95250 95369 -1 120 LSC 0.000000 0 0 245 74 no 0.000000 1 0.000000 0.000000 1.000000 24.300000 IGS_077 igs psbF|psbE psbF-psbE 95370 95378 0 9 LSC 0.000000 0 0 300 65 no 0.000000 1 0.000000 NA 1.000000 23.600000 psbE gene psbE psbE 95379 95630 -1 252 LSC 0.002646 1 0 300 300 no 0.333333 2 0.500000 0.002646 1.000000 41.700000 IGS_078 igs psbE|petL psbE-petL 95631 97061 0 1431 LSC 0.002795 6 3 186 300 yes 0.333333 2 0.500000 0.002801 1.000000 47.200000 petL gene petL petL 97062 97157 1 96 LSC 0.000000 0 0 4 300 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_079 igs petL|petG petL-petG 97158 97328 0 171 LSC 0.000000 0 0 100 300 no 0.000000 1 0.000000 0.000000 1.000000 26.200000 petG gene petG petG 97329 97442 1 114 LSC 0.000000 0 0 271 221 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_080 igs petG|trnW-CCA petG-trnW-CCA 97443 97571 0 129 LSC 0.000000 0 0 300 92 no 0.000000 1 0.000000 0.000000 1.000000 25.700000 trnW-CCA tRNA trnW-CCA trnW-CCA 97572 97645 -1 74 LSC 0.000000 0 0 300 18 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_081 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 97646 97792 0 147 LSC 0.004535 1 0 300 300 no 0.333333 2 0.500000 0.004535 1.000000 42.900000 trnP-UGG tRNA trnP-UGG trnP-UGG 97793 97866 -1 74 LSC 0.000000 0 0 128 300 no 0.000000 1 0.000000 0.000000 1.000000 28.300000 IGS_082 igs trnP-UGG|psaJ trnP-UGG-psaJ 97867 98353 0 487 LSC 0.000000 0 0 202 119 no 0.000000 1 0.000000 0.000000 1.000000 31.600000 psaJ gene psaJ psaJ 98354 98488 1 135 LSC 0.004938 1 0 300 300 no 0.333333 2 0.500000 0.004938 1.000000 43.100000 IGS_083 igs psaJ|rpl33 psaJ-rpl33 98489 98859 0 371 LSC 0.000000 0 3 15 116 no 0.333333 2 0.500000 0.000000 1.000000 28.500000 rpl33 gene rpl33 rpl33 98860 99060 1 201 LSC 0.003317 1 0 300 217 no 0.333333 2 0.500000 0.003317 1.000000 42.100000 IGS_084 igs rpl33|rps18 rpl33-rps18 99061 99283 0 223 LSC 0.002990 1 0 84 300 no 0.333333 2 0.500000 0.002990 1.000000 33.200000 rps18 gene rps18 rps18 99284 99589 1 306 LSC 0.000000 0 0 5 300 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_085 igs rps18|rpl20 rps18-rpl20 99590 99864 0 275 LSC 0.000000 0 0 300 119 no 0.000000 1 0.000000 0.000000 1.000000 27.700000 rpl20 gene rpl20 rpl20 99865 100218 -1 354 LSC 0.003766 2 0 300 300 no 0.333333 2 0.500000 0.003766 1.000000 43.500000 IGS_086 igs rpl20|rps12 rpl20-rps12 100219 101039 0 821 LSC 0.000000 0 4 215 196 no 0.333333 2 0.500000 0.000000 1.000000 46.500000 rps12_part1 gene rps12 rps12 101040 101153 -1 114 LSC 0.000000 0 0 300 82 no 0.000000 1 0.000000 0.000000 1.000000 24.900000 IGS_087 igs rps12|clpP rps12-clpP 101154 101327 0 174 LSC 0.003831 1 0 300 256 no 0.333333 2 0.500000 0.003831 1.000000 42.400000 clpP gene clpP clpP 101328 103584 -1 2257 LSC 0.000591 2 11 91 149 no 0.333333 2 0.500000 0.000594 1.000000 37.400000 IGS_088 igs clpP|psbB clpP-psbB 103585 104028 0 444 LSC 0.003003 2 0 300 32 no 0.333333 2 0.500000 0.003003 1.000000 32.300000 psbB gene psbB psbB 104029 105555 1 1527 LSC 0.002620 6 0 184 300 no 0.333333 2 0.500000 0.002620 1.000000 46.700000 IGS_089 igs psbB|psbT psbB-psbT 105556 105721 0 166 LSC 0.000000 0 0 47 300 no 0.000000 1 0.000000 0.000000 1.000000 22.300000 psbT gene psbT psbT 105722 105838 1 117 LSC 0.000000 0 0 213 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_090 igs psbT|psbN psbT-psbN 105839 105899 0 61 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbN gene psbN psbN 105900 106031 -1 132 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_091 igs psbN|psbH psbN-psbH 106032 106135 0 104 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbH gene psbH psbH 106136 106357 1 222 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_092 igs psbH|petB psbH-petB 106358 106478 0 121 LSC 0.000000 0 0 300 193 no 0.000000 1 0.000000 0.000000 1.000000 33.200000 petB gene petB petB 106479 107925 1 1447 LSC 0.000921 2 7 300 300 no 0.333333 2 0.500000 0.000926 1.000000 47.400000 IGS_093 igs petB|rpoA petB-rpoA 107926 109607 0 1682 LSC 0.001189 3 11 300 183 no 0.333333 2 0.500000 0.001197 1.000000 46.100000 rpoA gene rpoA rpoA 109608 110603 -1 996 LSC 0.002677 4 0 31 300 no 0.333333 2 0.500000 0.002677 1.000000 35.300000 IGS_094 igs rpoA|rps11 rpoA-rps11 110604 110668 0 65 LSC 0.000000 0 0 19 300 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 rps11 gene rps11 rps11 110669 111085 -1 417 LSC 0.000000 0 0 84 121 no 0.000000 1 0.000000 0.000000 1.000000 27.500000 IGS_095 igs rps11|rpl36 rps11-rpl36 111086 111218 0 133 LSC 0.005013 1 1 300 300 no 0.333333 2 0.500000 0.005051 1.000000 44.100000 rpl36 gene rpl36 rpl36 111219 111332 -1 114 LSC 0.000000 0 0 11 300 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_096 igs rpl36|rps8 rpl36-rps8 111333 111801 0 469 LSC 0.001421 1 0 125 51 no 0.333333 2 0.500000 0.001421 1.000000 33.300000 rps8 gene rps8 rps8 111802 112206 -1 405 LSC 0.004938 3 0 6 300 no 0.333333 2 0.500000 0.004938 1.000000 30.800000 IGS_097 igs rps8|rpl14 rps8-rpl14 112207 112445 0 239 LSC 0.000000 0 0 212 219 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl14 gene rpl14 rpl14 112446 112814 -1 369 LSC 0.001807 1 0 300 300 no 0.333333 2 0.500000 0.001807 1.000000 42.600000 IGS_098 igs rpl14|rpl16 rpl14-rpl16 112815 112952 0 138 LSC 0.000000 0 1 149 300 no 0.333333 2 0.500000 0.000000 1.000000 37.000000 rpl16 gene rpl16 rpl16 112953 114442 -1 1490 LSC 0.001342 3 8 287 300 no 0.333333 2 0.500000 0.001350 1.000000 47.700000 IGS_099 igs rpl16|rps3 rpl16-rps3 114443 114600 0 158 LSC 0.000000 0 0 121 300 no 0.000000 1 0.000000 0.000000 1.000000 27.800000 rps3 gene rps3 rps3 114601 115251 -1 651 LSC 0.000000 0 0 279 207 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_100 igs rps3|rpl22 rps3-rpl22 115252 115386 0 135 LSC 0.000000 0 0 300 72 no 0.000000 1 0.000000 0.000000 1.000000 24.100000 rpl22 gene rpl22 rpl22 115387 115803 -1 417 LSC 0.001599 1 0 300 166 no 0.333333 2 0.500000 0.001599 1.000000 40.900000 IGS_101 igs rpl22|rpl2 rpl22-rpl2 115804 116196 0 393 LSC 0.003393 2 0 300 300 no 0.333333 2 0.500000 0.003393 1.000000 44.100000 rpl2 gene rpl2 rpl2 116197 117717 -1 1521 IRa 0.000000 0 0 202 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_102 igs rpl2|rpl23 rpl2-rpl23 117718 117735 0 18 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 117736 118017 -1 282 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_103 igs rpl23|trnI-CAU rpl23-trnI-CAU 118018 118187 0 170 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-CAU tRNA trnI-CAU trnI-CAU 118188 118261 -1 74 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_104 igs trnI-CAU|ycf2 trnI-CAU-ycf2 118262 118349 0 88 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 118350 125255 1 6906 IRa 0.000579 6 0 300 300 no 0.333333 2 0.500000 0.000579 1.000000 40.400000 IGS_105 igs ycf2|trnL-CAA ycf2-trnL-CAA 125256 126209 0 954 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 trnL-CAA tRNA trnL-CAA trnL-CAA 126210 126290 -1 81 IRa 0.000000 0 0 300 283 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_106 igs trnL-CAA|ndhB trnL-CAA-ndhB 126291 126875 0 585 IRa 0.001140 1 0 300 300 no 0.333333 2 0.500000 0.001140 1.000000 46.700000 ndhB gene ndhB ndhB 126876 129088 -1 2213 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 38.500000 IGS_107 igs ndhB|rps7 ndhB-rps7 129089 129410 0 322 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.200000 rps7 gene rps7 rps7 129411 129878 -1 468 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_108 igs rps7|rps12 rps7-rps12 129879 129931 0 53 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 129932 130725 -1 794 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_109 igs rps12|trnV-GAC rps12-trnV-GAC 130726 132456 0 1731 IRa 0.000770 2 0 300 300 no 0.333333 2 0.500000 0.000770 1.000000 46.300000 trnV-GAC tRNA trnV-GAC trnV-GAC 132457 132528 1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_110 igs trnV-GAC|rrn16S trnV-GAC-rrn16S 132529 132783 0 255 IRa 0.000000 0 12 300 300 no 0.333333 2 0.500000 0.000000 1.000000 45.400000 rrn16S rRNA rrn16S rrn16S 132784 134274 1 1491 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_111 igs rrn16S|trnI-GAU rrn16S-trnI-GAU 134275 134570 0 296 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 134571 134612 1 42 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 135563 135597 1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_114 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 135598 135661 0 64 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 135662 135699 1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 136502 136536 1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_117 igs trnA-UGC|rrn23S trnA-UGC-rrn23S 136537 136695 0 159 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 136696 139504 1 2809 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_118 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 139505 139602 0 98 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 139603 139705 1 103 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_119 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 139706 139961 0 256 IRa 0.000000 0 0 300 198 no 0.000000 1 0.000000 0.000000 1.000000 33.600000 rrn5S rRNA rrn5S rrn5S 139962 140079 1 118 IRa 0.000000 0 0 300 80 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_120 igs rrn5S|trnR-ACG rrn5S-trnR-ACG 140080 140338 0 259 IRa 0.002574 1 0 300 300 no 0.333333 2 0.500000 0.002574 1.000000 41.600000 trnR-ACG tRNA trnR-ACG trnR-ACG 140339 140412 1 74 IRa 0.000000 0 0 178 300 no 0.000000 1 0.000000 0.000000 1.000000 32.100000 IGS_121 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 140413 141016 0 604 IRa 0.001104 1 0 252 300 no 0.333333 2 0.500000 0.001104 1.000000 47.000000 trnN-GUU tRNA trnN-GUU trnN-GUU 141017 141088 -1 72 IRa 0.000000 0 0 120 300 no 0.000000 1 0.000000 0.000000 1.000000 27.700000 IGS_122 igs trnN-GUU|ycf1 trnN-GUU-ycf1 141089 141415 0 327 IRa 0.000000 0 0 192 300 no 0.000000 1 0.000000 0.000000 1.000000 33.700000 ycf1 gene ycf1 ycf1 141416 142651 1 1236 IRa 0.000539 1 0 300 300 no 0.333333 2 0.500000 0.000539 1.000000 46.600000 ndhF gene ndhF ndhF 142624 144885 -1 2262 SSC 0.000000 0 0 40 256 no 0.000000 1 0.000000 0.000000 1.000000 26.400000 IGS_124 igs ndhF|rpl32 ndhF-rpl32 144886 145913 0 1028 SSC 0.003891 6 0 300 26 no 0.333333 2 0.500000 0.003891 1.000000 35.700000 rpl32 gene rpl32 rpl32 145914 146072 1 159 SSC 0.004193 1 0 142 250 no 0.333333 2 0.500000 0.004193 1.000000 38.300000 IGS_125 igs rpl32|trnL-UAG rpl32-trnL-UAG 146073 147151 0 1079 SSC 0.003707 6 7 132 155 no 0.333333 2 0.500000 0.003731 1.000000 44.300000 trnL-UAG tRNA trnL-UAG trnL-UAG 147152 147231 1 80 SSC 0.000000 0 0 101 75 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 IGS_126 igs trnL-UAG|ccsA trnL-UAG-ccsA 147232 147327 0 96 SSC 0.013889 2 0 181 281 no 0.333333 2 0.500000 0.013889 1.000000 47.400000 ccsA gene ccsA ccsA 147328 148302 1 975 SSC 0.003419 5 0 9 15 no 0.333333 2 0.500000 0.003419 1.000000 34.100000 IGS_127 igs ccsA|psaC ccsA-psaC 148303 150198 0 1896 SSC 0.001406 4 1 30 300 no 0.333333 2 0.500000 0.001407 1.000000 33.600000 psaC gene psaC psaC 150199 150444 -1 246 SSC 0.000000 0 0 300 182 no 0.000000 1 0.000000 0.000000 1.000000 32.400000 IGS_128 igs psaC|ndhE psaC-ndhE 150445 150693 0 249 SSC 0.008032 3 0 300 300 no 0.333333 2 0.500000 0.008032 1.000000 45.100000 ndhE gene ndhE ndhE 150694 150999 -1 306 SSC 0.000000 0 0 19 27 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 IGS_129 igs ndhE|ndhG ndhE-ndhG 151000 151245 0 246 SSC 0.002710 1 0 300 300 no 0.333333 2 0.500000 0.002710 1.000000 41.700000 ndhG gene ndhG ndhG 151246 151776 -1 531 SSC 0.000000 0 0 218 26 no 0.000000 1 0.000000 0.000000 1.000000 25.500000 IGS_130 igs ndhG|ndhI ndhG-ndhI 151777 152135 0 359 SSC 0.005571 3 0 300 300 no 0.333333 2 0.500000 0.005571 1.000000 44.800000 ndhI gene ndhI ndhI 152136 152639 -1 504 SSC 0.000000 0 0 96 293 no 0.000000 1 0.000000 0.000000 1.000000 30.200000 IGS_131 igs ndhI|ndhA ndhI-ndhA 152640 152721 0 82 SSC 0.000000 0 0 300 211 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ndhA gene ndhA ndhA 152722 155106 -1 2385 SSC 0.001957 7 26 300 300 yes 1.000000 3 1.000000 0.001977 1.000000 59.400000 IGS_132 igs ndhA|ndhH ndhA-ndhH 155107 155107 0 1 SSC 0.000000 0 0 87 300 no 0.000000 1 0.000000 NA 1.000000 25.300000 ndhH gene ndhH ndhH 155108 156289 -1 1182 SSC 0.000000 0 0 88 169 no 0.000000 1 0.000000 0.000000 1.000000 31.600000 IGS_133 igs ndhH|rps15 ndhH-rps15 156290 156404 0 115 SSC 0.000000 0 0 300 54 no 0.000000 1 0.000000 0.000000 1.000000 22.800000 rps15 gene rps15 rps15 156405 156677 -1 273 SSC 0.004884 2 0 300 240 no 0.333333 2 0.500000 0.004884 1.000000 43.100000 IGS_134 igs rps15|ycf1 rps15-ycf1 156678 157060 0 383 SSC 0.001741 1 0 98 300 no 0.333333 2 0.500000 0.001741 1.000000 35.200000 ycf1 gene ycf1 ycf1 157061 161626 -1 4566 SSC 0.002336 16 0 142 23 no 0.333333 2 0.500000 0.002336 1.000000 28.900000 IGS_135 igs ycf1|trnN-GUU ycf1-trnN-GUU 161627 1493 0 1518 IRb 0.095238 3 1493 300 300 no 1.000000 3 1.000000 0.049048 0.018445 69.200000