feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 88 162 -1 75 LSC 0.000000 0 1 99 106 no 0.333333 2 0.500000 0.000000 1.000000 34.000000 IGS_001 igs trnH|psbA trnH-psbA 163 421 0 259 LSC 0.017021 6 24 174 300 yes 1.000000 3 1.000000 0.017021 0.907336 64.300000 psbA gene psbA psbA 422 1483 -1 1062 LSC 0.000628 1 0 136 288 no 0.333333 2 0.500000 0.000628 1.000000 41.900000 IGS_002 igs psbA|trnK psbA-trnK 1484 1778 0 295 LSC 0.002260 1 0 65 190 no 0.333333 2 0.500000 0.002260 1.000000 31.300000 trnK_part2 tRNA trnK trnK 1779 1813 -1 35 LSC 0.000000 0 0 6 155 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 matK gene matK matK 2079 3611 -1 1533 LSC 0.008263 19 0 109 9 no 0.333333 2 0.500000 0.008263 1.000000 37.100000 IGS_005 igs matK|trnK matK-trnK 3612 4377 0 766 LSC 0.020970 18 75 53 198 yes 1.000000 3 1.000000 0.010768 0.996084 65.200000 trnK_part1 tRNA trnK trnK 4378 4414 -1 37 LSC 0.000000 0 0 165 161 no 0.000000 1 0.000000 0.000000 1.000000 30.800000 IGS_006 igs trnK|trnH trnK-trnH 4415 5688 0 1274 LSC 0.008506 16 29 202 281 yes 1.000000 3 1.000000 0.008568 0.984301 66.400000 trnH tRNA trnH trnH 5689 5760 -1 72 LSC 0.000000 0 0 300 209 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_007 igs trnH|psbK trnH-psbK 5761 6114 0 354 LSC 0.009416 5 1 300 223 no 0.333333 2 0.500000 0.009443 1.000000 47.500000 psbK gene psbK psbK 6115 6309 1 195 LSC 0.000000 0 0 44 28 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_008 igs psbK|psbI psbK-psbI 6310 6744 0 435 LSC 0.010728 7 2 239 300 no 0.333333 2 0.500000 0.010778 1.000000 50.200000 psbI gene psbI psbI 6745 6855 1 111 LSC 0.000000 0 1 82 300 no 0.333333 2 0.500000 0.000000 1.000000 32.200000 IGS_009 igs psbI|trnS psbI-trnS 6856 7002 0 147 LSC 0.000000 0 3 193 300 no 0.333333 2 0.500000 0.000000 1.000000 41.800000 trnS tRNA trnS trnS 7003 7090 -1 88 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_010 igs trnS|trnG trnS-trnG 7091 7789 0 699 LSC 0.001091 1 88 300 62 no 1.000000 3 1.000000 0.001091 0.874106 51.100000 trnG_part1 tRNA trnG trnG 7790 7814 1 25 LSC 0.000000 0 0 3 37 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 trnG_part2 tRNA trnG trnG 8513 8560 1 48 LSC 0.000000 0 0 188 34 no 0.000000 1 0.000000 0.000000 1.000000 21.300000 IGS_013 igs trnG|trnR trnG-trnR 8561 8765 0 205 LSC 0.003252 1 33 236 124 no 0.333333 2 0.500000 0.003876 1.000000 40.900000 trnR tRNA trnR trnR 8766 8837 1 72 LSC 0.000000 0 0 170 52 no 0.000000 1 0.000000 0.000000 1.000000 22.700000 IGS_014 igs trnR|atpA trnR-atpA 8838 8952 0 115 LSC 0.023188 4 0 242 237 no 0.333333 2 0.500000 0.023188 1.000000 54.800000 atpA gene atpA atpA 8953 10476 -1 1524 LSC 0.003062 7 0 46 28 no 0.333333 2 0.500000 0.003062 1.000000 35.300000 IGS_015 igs atpA|atpF atpA-atpF 10477 10529 0 53 LSC 0.012579 1 0 14 149 no 0.333333 2 0.500000 0.012579 1.000000 34.100000 atpF gene atpF atpF 10530 11813 -1 1284 LSC 0.005192 10 1 24 300 no 0.333333 2 0.500000 0.005196 1.000000 36.400000 IGS_016 igs atpF|atpH atpF-atpH 11814 12233 0 420 LSC 0.000000 0 1 241 27 no 0.333333 2 0.500000 0.000000 1.000000 29.800000 atpH gene atpH atpH 12234 12479 -1 246 LSC 0.005420 2 0 300 82 no 0.333333 2 0.500000 0.005420 1.000000 34.600000 IGS_017 igs atpH|atpI atpH-atpI 12480 13507 0 1028 LSC 0.011025 17 48 149 300 yes 0.333333 2 0.500000 0.011565 1.000000 54.800000 atpI gene atpI atpI 13508 14251 -1 744 LSC 0.000896 1 0 52 117 no 0.333333 2 0.500000 0.000896 1.000000 35.700000 IGS_018 igs atpI|rps2 atpI-rps2 14252 14460 0 209 LSC 0.003190 1 0 253 120 no 0.333333 2 0.500000 0.003190 1.000000 36.000000 rps2 gene rps2 rps2 14461 15171 -1 711 LSC 0.003751 4 0 91 213 no 0.333333 2 0.500000 0.003751 1.000000 40.500000 IGS_019 igs rps2|rpoC2 rps2-rpoC2 15172 15421 0 250 LSC 0.002667 1 0 227 267 no 0.333333 2 0.500000 0.002667 1.000000 41.700000 rpoC2 gene rpoC2 rpoC2 15422 19615 -1 4194 LSC 0.002861 18 0 36 157 no 0.333333 2 0.500000 0.002861 1.000000 30.800000 IGS_020 igs rpoC2|rpoC1 rpoC2-rpoC1 19616 19790 0 175 LSC 0.003810 1 6 122 9 no 1.000000 3 1.000000 0.003877 1.000000 44.500000 rpoC1 gene rpoC1 rpoC1 19791 22626 -1 2836 LSC 0.003526 15 0 17 236 no 0.333333 2 0.500000 0.003526 1.000000 32.000000 IGS_021 igs rpoC1|rpoB rpoC1-rpoB 22627 22631 0 5 LSC 0.000000 0 0 300 231 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpoB gene rpoB rpoB 22632 25844 -1 3213 LSC 0.003320 16 0 300 94 no 0.333333 2 0.500000 0.003320 1.000000 37.000000 IGS_022 igs rpoB|trnC rpoB-trnC 25845 26969 0 1125 LSC 0.004741 8 2 22 173 no 0.333333 2 0.500000 0.004749 1.000000 36.100000 trnC tRNA trnC trnC 26970 27040 1 71 LSC 0.000000 0 0 93 102 no 0.000000 1 0.000000 0.000000 1.000000 25.700000 IGS_023 igs trnC|petN trnC-petN 27041 27427 0 387 LSC 0.008613 5 131 164 175 no 0.333333 2 0.500000 0.013021 1.000000 47.300000 petN gene petN petN 27428 27517 1 90 LSC 0.000000 0 0 47 85 no 0.000000 1 0.000000 0.000000 1.000000 22.300000 IGS_024 igs petN|psbM petN-psbM 27518 28838 0 1321 LSC 0.006561 13 40 137 119 no 0.333333 2 0.500000 0.006766 1.000000 47.800000 psbM gene psbM psbM 28839 28943 -1 105 LSC 0.000000 0 0 237 14 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_025 igs psbM|trnD psbM-trnD 28944 30147 0 1204 LSC 0.009413 17 6 300 145 no 0.333333 2 0.500000 0.009460 1.000000 48.700000 trnD tRNA trnD trnD 30148 30224 -1 77 LSC 0.000000 0 0 130 68 no 0.000000 1 0.000000 0.000000 1.000000 23.800000 IGS_026 igs trnD|trnY trnD-trnY 30225 30549 0 325 LSC 0.004103 2 0 207 300 no 0.333333 2 0.500000 0.004103 1.000000 43.100000 trnY tRNA trnY trnY 30550 30635 -1 86 LSC 0.000000 0 0 255 230 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_027 igs trnY|trnE trnY-trnE 30636 30692 0 57 LSC 0.000000 0 0 300 173 no 0.000000 1 0.000000 0.000000 1.000000 31.700000 trnE tRNA trnE trnE 30693 30767 -1 75 LSC 0.000000 0 0 300 98 no 0.000000 1 0.000000 0.000000 1.000000 26.100000 IGS_028 igs trnE|trnT trnE-trnT 30768 30999 0 232 LSC 0.011494 4 4 300 138 no 0.333333 2 0.500000 0.011696 1.000000 44.700000 trnT tRNA trnT trnT 31000 31073 1 74 LSC 0.000000 0 0 1 64 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_029 igs trnT|psbD trnT-psbD 31074 32484 0 1411 LSC 0.008505 18 49 75 300 no 0.333333 2 0.500000 0.008811 1.000000 46.300000 psbD gene psbD psbD 32485 33546 1 1062 LSC 0.000000 0 0 102 183 no 0.000000 1 0.000000 0.000000 1.000000 32.600000 psbC gene psbC psbC 33494 34915 1 1422 LSC 0.003751 8 0 300 273 no 0.333333 2 0.500000 0.003751 1.000000 48.600000 IGS_031 igs psbC|trnS psbC-trnS 34916 35150 0 235 LSC 0.000000 0 0 300 38 no 0.000000 1 0.000000 0.000000 1.000000 21.600000 trnS tRNA trnS trnS 35151 35240 -1 90 LSC 0.007407 1 0 300 256 no 0.333333 2 0.500000 0.007407 1.000000 44.700000 IGS_032 igs trnS|psbZ trnS-psbZ 35241 35624 0 384 LSC 0.004016 2 52 51 20 no 1.000000 3 1.000000 0.004016 0.864583 44.900000 psbZ gene psbZ psbZ 35625 35813 1 189 LSC 0.010582 3 0 69 256 no 0.333333 2 0.500000 0.010582 1.000000 36.900000 IGS_033 igs psbZ|trnG psbZ-trnG 35814 36305 0 492 LSC 0.027601 16 47 9 192 yes 1.000000 3 1.000000 0.018113 0.957317 62.900000 IGS_034 igs trnG|trnM trnG-trnM 36378 36557 0 180 LSC 0.007407 2 0 107 102 no 0.333333 2 0.500000 0.007407 1.000000 37.400000 trnM tRNA trnM trnM 36558 36632 -1 75 LSC 0.000000 0 0 58 27 no 0.000000 1 0.000000 0.000000 1.000000 20.800000 IGS_035 igs trnM|rps14 trnM-rps14 36633 36797 0 165 LSC 0.004040 1 1 133 74 no 0.333333 2 0.500000 0.004065 1.000000 33.800000 rps14 gene rps14 rps14 36798 37100 -1 303 LSC 0.008801 4 0 137 77 no 0.333333 2 0.500000 0.008801 1.000000 36.400000 IGS_036 igs rps14|psaB rps14-psaB 37101 37218 0 118 LSC 0.011299 2 0 65 87 no 0.333333 2 0.500000 0.011299 1.000000 37.100000 psaB gene psaB psaB 37219 39423 -1 2205 LSC 0.000907 3 0 20 286 no 0.333333 2 0.500000 0.000907 1.000000 31.900000 IGS_037 igs psaB|psaA psaB-psaA 39424 39448 0 25 LSC 0.000000 0 0 300 261 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 39449 41701 -1 2253 LSC 0.000296 1 0 300 300 no 0.333333 2 0.500000 0.000296 1.000000 44.900000 IGS_038 igs psaA|ycf3 psaA-ycf3 41702 42352 0 651 LSC 0.002048 2 20 300 300 yes 1.000000 3 1.000000 0.002081 1.000000 63.600000 ycf3 gene ycf3 ycf3 42353 44333 -1 1981 LSC 0.001716 5 39 247 10 no 1.000000 3 1.000000 0.001716 0.980313 46.400000 IGS_039 igs ycf3|trnS ycf3-trnS 44334 44916 0 583 LSC 0.001235 1 43 300 189 no 1.000000 3 1.000000 0.001235 0.926244 62.100000 trnS tRNA trnS trnS 44917 45004 1 88 LSC 0.000000 0 0 300 101 no 0.000000 1 0.000000 0.000000 1.000000 26.300000 IGS_040 igs trnS|rps4 trnS-rps4 45005 45290 0 286 LSC 0.009324 4 0 300 300 no 0.333333 2 0.500000 0.009324 1.000000 45.900000 rps4 gene rps4 rps4 45291 45896 -1 606 LSC 0.001100 1 0 19 280 no 0.333333 2 0.500000 0.001100 1.000000 33.400000 IGS_041 igs rps4|trnT rps4-trnT 45897 46106 0 210 LSC 0.000000 0 0 242 70 no 0.000000 1 0.000000 0.000000 1.000000 24.000000 trnT tRNA trnT trnT 46107 46181 -1 75 LSC 0.008889 1 0 300 300 no 0.333333 2 0.500000 0.008889 1.000000 45.700000 IGS_042 igs trnT|trnL trnT-trnL 46182 46656 0 475 LSC 0.002807 2 2 4 236 no 0.333333 2 0.500000 0.002819 1.000000 31.200000 trnL_part1 tRNA trnL trnL 46657 46691 1 35 LSC 0.000000 0 0 39 201 no 0.000000 1 0.000000 0.000000 1.000000 21.700000 trnL_part2 tRNA trnL trnL 47287 47336 1 50 LSC 0.000000 0 0 181 181 no 0.000000 1 0.000000 0.000000 1.000000 32.300000 IGS_045 igs trnL|trnF trnL-trnF 47337 47656 0 320 LSC 0.002083 1 0 231 300 no 0.333333 2 0.500000 0.002083 1.000000 41.700000 trnF tRNA trnF trnF 47657 47730 1 74 LSC 0.000000 0 0 138 262 no 0.000000 1 0.000000 0.000000 1.000000 29.100000 IGS_046 igs trnF|ndhJ trnF-ndhJ 47731 48495 0 765 LSC 0.007608 8 68 212 300 yes 1.000000 3 1.000000 0.007652 0.916340 66.900000 ndhJ gene ndhJ ndhJ 48496 48975 -1 480 LSC 0.002778 2 0 9 178 no 0.333333 2 0.500000 0.002778 1.000000 31.200000 IGS_047 igs ndhJ|ndhK ndhJ-ndhK 48976 49083 0 108 LSC 0.000000 0 0 12 70 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 ndhK gene ndhK ndhK 49084 49941 -1 858 LSC 0.001554 2 0 120 300 no 0.333333 2 0.500000 0.001554 1.000000 41.200000 ndhC gene ndhC ndhC 49821 50183 -1 363 LSC 0.001837 1 0 300 300 no 0.333333 2 0.500000 0.001837 1.000000 42.500000 IGS_049 igs ndhC|trnV ndhC-trnV 50184 51336 0 1153 LSC 0.000599 1 41 300 300 yes 1.000000 3 1.000000 0.000600 0.965308 62.400000 trnV_part2 tRNA trnV trnV 51337 51371 -1 35 LSC 0.000000 0 0 188 300 no 0.000000 1 0.000000 0.000000 1.000000 32.900000 trnV_part1 tRNA trnV trnV 51984 52022 -1 39 LSC 0.000000 0 0 154 55 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 IGS_052 igs trnV|trnM trnV-trnM 52023 52194 0 172 LSC 0.003876 1 0 193 164 no 0.333333 2 0.500000 0.003876 1.000000 39.800000 trnM tRNA trnM trnM 52195 52269 1 75 LSC 0.000000 0 0 116 89 no 0.000000 1 0.000000 0.000000 1.000000 25.400000 IGS_053 igs trnM|atpE trnM-atpE 52270 52530 0 261 LSC 0.007663 3 8 191 87 no 0.333333 2 0.500000 0.007905 1.000000 39.900000 atpE gene atpE atpE 52531 52932 -1 402 LSC 0.001658 1 0 167 83 no 0.333333 2 0.500000 0.001658 1.000000 34.400000 atpB gene atpB atpB 52929 54425 -1 1497 LSC 0.001336 3 0 300 149 no 0.333333 2 0.500000 0.001336 1.000000 43.300000 IGS_055 igs atpB|rbcL atpB-rbcL 54426 55217 0 792 LSC 0.006076 7 24 300 300 yes 1.000000 3 1.000000 0.006076 0.969697 65.400000 rbcL gene rbcL rbcL 55218 56666 1 1449 LSC 0.001380 3 0 67 23 no 0.333333 2 0.500000 0.001380 1.000000 33.900000 IGS_056 igs rbcL|accD rbcL-accD 56667 57327 0 661 LSC 0.010101 9 88 20 227 no 1.000000 3 1.000000 0.008618 0.998487 56.300000 accD gene accD accD 57328 58803 1 1476 LSC 0.005420 12 8 16 224 no 0.333333 2 0.500000 0.005450 1.000000 36.500000 IGS_057 igs accD|psaI accD-psaI 58804 59521 0 718 LSC 0.004643 5 1 51 221 no 0.333333 2 0.500000 0.004649 1.000000 38.200000 psaI gene psaI psaI 59522 59635 1 114 LSC 0.000000 0 0 112 107 no 0.000000 1 0.000000 0.000000 1.000000 26.800000 IGS_058 igs psaI|ycf4 psaI-ycf4 59636 60053 0 418 LSC 0.011164 7 0 226 300 no 0.333333 2 0.500000 0.011164 1.000000 49.600000 ycf4 gene ycf4 ycf4 60054 60608 1 555 LSC 0.002402 2 0 144 60 no 0.333333 2 0.500000 0.002402 1.000000 36.300000 IGS_059 igs ycf4|cemA ycf4-cemA 60609 61007 0 399 LSC 0.062305 30 134 78 245 yes 1.000000 3 1.000000 0.075472 0.804511 75.600000 cemA gene cemA cemA 61008 61694 1 687 LSC 0.000970 1 0 138 82 no 0.333333 2 0.500000 0.000970 1.000000 38.000000 IGS_060 igs cemA|petA cemA-petA 61695 61934 0 240 LSC 0.002778 1 0 300 300 no 0.333333 2 0.500000 0.002778 1.000000 41.800000 petA gene petA petA 61935 62897 1 963 LSC 0.002077 3 0 157 54 no 0.333333 2 0.500000 0.002077 1.000000 36.600000 IGS_061 igs petA|psbJ petA-psbJ 62898 63856 0 959 LSC 0.014599 21 136 300 276 yes 0.333333 2 0.500000 0.017011 1.000000 60.300000 psbJ gene psbJ psbJ 63857 63979 -1 123 LSC 0.000000 0 0 55 153 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 IGS_062 igs psbJ|psbL psbJ-psbL 63980 64187 0 208 LSC 0.009615 3 42 178 300 no 0.333333 2 0.500000 0.012048 1.000000 48.600000 psbL gene psbL psbL 64188 64304 -1 117 LSC 0.000000 0 0 51 300 no 0.000000 1 0.000000 0.000000 1.000000 22.600000 IGS_063 igs psbL|psbF psbL-psbF 64305 64330 0 26 LSC 0.000000 0 0 168 300 no 0.000000 1 0.000000 0.000000 1.000000 31.400000 psbF gene psbF psbF 64331 64450 -1 120 LSC 0.000000 0 0 194 288 no 0.000000 1 0.000000 0.000000 1.000000 33.300000 IGS_064 igs psbF|psbE psbF-psbE 64451 64464 0 14 LSC 0.000000 0 0 300 274 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbE gene psbE psbE 64465 64716 -1 252 LSC 0.000000 0 0 300 22 no 0.000000 1 0.000000 0.000000 1.000000 20.400000 IGS_065 igs psbE|petL psbE-petL 64717 65846 0 1130 LSC 0.025023 31 324 300 175 yes 1.000000 3 1.000000 0.014548 0.954867 73.800000 petL gene petL petL 65847 65942 1 96 LSC 0.000000 0 0 171 79 no 0.000000 1 0.000000 0.000000 1.000000 24.700000 IGS_066 igs petL|petG petL-petG 65943 66123 0 181 LSC 0.007366 2 0 267 126 no 0.333333 2 0.500000 0.007366 1.000000 39.100000 petG gene petG petG 66124 66237 1 114 LSC 0.000000 0 0 97 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_067 igs petG|trnW petG-trnW 66238 66353 0 116 LSC 0.011494 2 0 211 166 no 0.333333 2 0.500000 0.011494 1.000000 44.800000 trnW tRNA trnW trnW 66354 66427 -1 74 LSC 0.000000 0 0 50 92 no 0.000000 1 0.000000 0.000000 1.000000 22.500000 IGS_068 igs trnW|trnP trnW-trnP 66428 66667 0 240 LSC 0.002778 1 13 124 292 no 0.333333 2 0.500000 0.002937 1.000000 41.800000 trnP tRNA trnP trnP 66668 66742 -1 75 LSC 0.000000 0 0 147 217 no 0.000000 1 0.000000 0.000000 1.000000 29.800000 IGS_069 igs trnP|psaJ trnP-psaJ 66743 67169 0 427 LSC 0.004866 3 17 222 300 no 1.000000 3 1.000000 0.004878 0.962529 61.900000 psaJ gene psaJ psaJ 67170 67304 1 135 LSC 0.000000 0 0 1 262 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_070 igs psaJ|rpl33 psaJ-rpl33 67305 67786 0 482 LSC 0.001440 1 22 136 300 no 1.000000 3 1.000000 0.001449 0.960581 56.700000 rpl33 gene rpl33 rpl33 67787 67987 1 201 LSC 0.000000 0 0 219 268 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_071 igs rpl33|rps18 rpl33-rps18 67988 68190 0 203 LSC 0.000000 0 0 300 65 no 0.000000 1 0.000000 0.000000 1.000000 23.600000 rps18 gene rps18 rps18 68191 68496 1 306 LSC 0.010893 5 0 300 300 no 0.333333 2 0.500000 0.010893 1.000000 47.100000 IGS_072 igs rps18|rpl20 rps18-rpl20 68497 68780 0 284 LSC 0.000000 0 0 29 300 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 rpl20 gene rpl20 rpl20 68781 69134 -1 354 LSC 0.003766 2 0 300 106 no 0.333333 2 0.500000 0.003766 1.000000 36.500000 IGS_073 igs rpl20|rps12 rpl20-rps12 69135 69962 0 828 LSC 0.008052 10 1 5 300 no 0.333333 2 0.500000 0.008061 1.000000 36.900000 rps12_part1 gene rps12 rps12 69963 70076 -1 114 LSC 0.000000 0 0 21 300 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 IGS_074 igs rps12|clpP rps12-clpP 70077 70261 0 185 LSC 0.000000 0 0 135 300 no 0.000000 1 0.000000 0.000000 1.000000 28.900000 clpP gene clpP clpP 70262 72331 -1 2070 LSC 0.004980 15 63 300 27 no 1.000000 3 1.000000 0.004982 0.970048 50.500000 IGS_075 igs clpP|psbB clpP-psbB 72332 72839 0 508 LSC 0.012712 9 37 44 128 no 1.000000 3 1.000000 0.012739 0.929134 56.900000 psbB gene psbB psbB 72840 74366 1 1527 LSC 0.002183 5 0 18 15 no 0.333333 2 0.500000 0.002183 1.000000 33.700000 IGS_076 igs psbB|psbT psbB-psbT 74367 74546 0 180 LSC 0.007407 2 2 252 56 no 0.333333 2 0.500000 0.007491 1.000000 35.200000 psbT gene psbT psbT 74547 74654 1 108 LSC 0.006173 1 0 131 44 no 0.333333 2 0.500000 0.006173 1.000000 32.200000 IGS_077 igs psbT|psbN psbT-psbN 74655 74721 0 67 LSC 0.019900 2 0 51 117 no 0.333333 2 0.500000 0.019900 1.000000 41.500000 psbN gene psbN psbN 74722 74853 -1 132 LSC 0.005051 1 0 21 5 no 0.333333 2 0.500000 0.005051 1.000000 28.600000 IGS_078 igs psbN|psbH psbN-psbH 74854 74981 0 128 LSC 0.010417 2 0 14 4 no 0.333333 2 0.500000 0.010417 1.000000 31.900000 psbH gene psbH psbH 74982 75203 1 222 LSC 0.009009 3 0 82 19 no 0.333333 2 0.500000 0.009009 1.000000 32.200000 IGS_079 igs psbH|petB psbH-petB 75204 75348 0 145 LSC 0.009195 2 0 39 27 no 0.333333 2 0.500000 0.009195 1.000000 32.900000 petB gene petB petB 75349 76796 1 1448 LSC 0.005525 12 0 50 191 no 0.333333 2 0.500000 0.005525 1.000000 38.500000 IGS_080 igs petB|petD petB-petD 76797 77016 0 220 LSC 0.003030 1 0 204 300 no 0.333333 2 0.500000 0.003030 1.000000 41.900000 petD gene petD petD 77017 78293 1 1277 LSC 0.003132 6 1 28 187 no 0.333333 2 0.500000 0.003135 1.000000 35.400000 IGS_081 igs petD|rpoA petD-rpoA 78294 78451 0 158 LSC 0.000000 0 0 300 29 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 rpoA gene rpoA rpoA 78452 79471 -1 1020 LSC 0.002614 4 0 300 300 no 0.333333 2 0.500000 0.002614 1.000000 47.900000 IGS_082 igs rpoA|rps11 rpoA-rps11 79472 79545 0 74 LSC 0.000000 0 1 300 273 no 0.333333 2 0.500000 0.000000 1.000000 41.500000 rps11 gene rps11 rps11 79546 79962 -1 417 LSC 0.003197 2 0 300 202 no 0.333333 2 0.500000 0.003197 1.000000 44.500000 IGS_083 igs rps11|rpl36 rps11-rpl36 79963 80069 0 107 LSC 0.000000 0 0 35 95 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 rpl36 gene rpl36 rpl36 80070 80192 -1 123 LSC 0.005420 1 0 142 61 no 0.333333 2 0.500000 0.005420 1.000000 33.000000 IGS_084 igs rpl36|infA rpl36-infA 80193 80316 0 124 LSC 0.010753 2 1 27 23 no 0.333333 2 0.500000 0.010840 1.000000 34.500000 infA gene infA infA 80317 80545 1 229 LSC 0.026201 9 1 29 14 no 0.333333 2 0.500000 0.026316 1.000000 43.300000 IGS_085 igs infA|rps8 infA-rps8 80546 80670 0 125 LSC 0.010667 2 1 22 179 no 0.333333 2 0.500000 0.010753 1.000000 34.400000 rps8 gene rps8 rps8 80671 81075 -1 405 LSC 0.004938 3 0 64 136 no 0.333333 2 0.500000 0.004938 1.000000 35.100000 IGS_086 igs rps8|rpl14 rps8-rpl14 81076 81328 0 253 LSC 0.002635 1 0 68 57 no 0.333333 2 0.500000 0.002635 1.000000 31.000000 rpl14 gene rpl14 rpl14 81329 81697 -1 369 LSC 0.010840 6 0 116 300 no 0.333333 2 0.500000 0.010840 1.000000 42.000000 IGS_087 igs rpl14|rpl16 rpl14-rpl16 81698 81830 0 133 LSC 0.000000 0 0 19 300 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 rpl16 gene rpl16 rpl16 81831 83354 -1 1524 LSC 0.006999 16 55 152 88 no 0.333333 2 0.500000 0.007261 1.000000 46.400000 IGS_088 igs rpl16|rps3 rpl16-rps3 83355 83511 0 157 LSC 0.029724 5 52 51 281 no 1.000000 3 1.000000 0.013790 1.000000 61.500000 rps3 gene rps3 rps3 83512 84168 -1 657 LSC 0.005074 5 0 61 202 no 0.333333 2 0.500000 0.005074 1.000000 39.100000 IGS_089 igs rps3|rpl22 rps3-rpl22 84169 84288 0 120 LSC 0.000000 0 0 180 82 no 0.000000 1 0.000000 0.000000 1.000000 24.900000 rpl22 gene rpl22 rpl22 84289 84678 -1 390 LSC 0.011966 7 0 300 8 yes 0.333333 2 0.500000 0.011966 1.000000 35.100000 IGS_090 igs rpl22|rps19 rpl22-rps19 84679 84859 0 181 IRb 0.036832 10 28 0 72 no 0.333333 2 0.500000 0.043573 1.000000 53.100000 rps19 gene rps19 rps19 84860 85138 -1 279 IRb 0.002389 1 0 78 177 no 0.333333 2 0.500000 0.002389 1.000000 32.400000 IGS_091 igs rps19|rpl2 rps19-rpl2 85139 85204 0 66 IRb 0.000000 0 0 206 111 no 0.000000 1 0.000000 0.000000 1.000000 27.100000 rpl2 gene rpl2 rpl2 85205 86697 -1 1493 IRb 0.002233 5 0 272 247 no 0.333333 2 0.500000 0.002233 1.000000 47.700000 IGS_092 igs rpl2|rpl23 rpl2-rpl23 86698 86715 0 18 IRb 0.000000 0 0 300 229 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 86716 86997 -1 282 IRb 0.002364 1 0 300 5 no 0.333333 2 0.500000 0.002364 1.000000 26.900000 IGS_093 igs rpl23|trnM rpl23-trnM 86998 87161 0 164 IRb 0.004065 1 0 52 300 no 0.333333 2 0.500000 0.004065 1.000000 31.500000 trnM tRNA trnM trnM 87162 87236 -1 75 IRb 0.000000 0 0 158 266 no 0.000000 1 0.000000 0.000000 1.000000 30.600000 IGS_094 igs trnM|ycf2 trnM-ycf2 87237 87330 0 94 IRb 0.000000 0 0 233 172 no 0.000000 1 0.000000 0.000000 1.000000 31.600000 ycf2 gene ycf2 ycf2 87331 94182 1 6852 IRb 0.000973 10 0 300 300 no 0.333333 2 0.500000 0.000973 1.000000 40.600000 IGS_095 igs ycf2|trnL ycf2-trnL 94183 95201 0 1019 IRb 0.000000 0 0 264 122 no 0.000000 1 0.000000 0.000000 1.000000 34.200000 IGS_096 igs trnL|ndhB trnL-ndhB 95285 95853 0 569 IRb 0.001172 1 0 300 300 no 0.333333 2 0.500000 0.001172 1.000000 46.400000 ndhB gene ndhB ndhB 95854 98068 -1 2215 IRb 0.000301 1 0 300 300 no 0.333333 2 0.500000 0.000301 1.000000 45.000000 IGS_097 igs ndhB|rps7 ndhB-rps7 98069 98388 0 320 IRb 0.000000 0 0 165 300 no 0.000000 1 0.000000 0.000000 1.000000 31.500000 rps7 gene rps7 rps7 98389 98856 -1 468 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_098 igs rps7|rps12 rps7-rps12 98857 98914 0 58 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 98915 99708 -1 794 IRb 0.000840 1 0 300 300 no 0.333333 2 0.500000 0.000840 1.000000 46.800000 IGS_099 igs rps12|trnV rps12-trnV 99709 101581 0 1873 IRb 0.002501 7 18 300 300 no 1.000000 3 1.000000 0.002516 0.996263 60.600000 IGS_100 igs trnV|rrn16S trnV-rrn16S 101654 101878 0 225 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 101879 103369 1 1491 IRb 0.000000 0 0 300 149 no 0.000000 1 0.000000 0.000000 1.000000 36.200000 IGS_101 igs rrn16S|trnI rrn16S-trnI 103370 103669 0 300 IRb 0.002222 1 0 300 300 no 0.333333 2 0.500000 0.002222 1.000000 41.400000 trnI_part1 tRNA trnI trnI 103670 103701 1 32 IRb 0.000000 0 0 150 300 no 0.000000 1 0.000000 0.000000 1.000000 30.000000 trnI_part2 tRNA trnI trnI 104651 104685 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_104 igs trnI|trnA trnI-trnA 104686 104749 0 64 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 104750 104787 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 105593 105627 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_107 igs trnA|rrn23S trnA-rrn23S 105628 105779 0 152 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 105780 108589 1 2810 IRb 0.000000 0 0 300 22 no 0.000000 1 0.000000 0.000000 1.000000 23.900000 IGS_108 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 108590 108687 0 98 IRb 0.006803 1 0 300 300 no 0.333333 2 0.500000 0.006803 1.000000 44.300000 rrn4.5S rRNA rrn4.5S rrn4.5S 108688 108790 1 103 IRb 0.000000 0 0 75 300 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 IGS_109 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 108791 109017 0 227 IRb 0.000000 0 0 178 300 no 0.000000 1 0.000000 0.000000 1.000000 32.100000 rrn5S rRNA rrn5S rrn5S 109018 109138 1 121 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_110 igs rrn5S|trnR rrn5S-trnR 109139 109383 0 245 IRb 0.000000 0 0 300 200 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnR tRNA trnR trnR 109384 109458 1 75 IRb 0.000000 0 0 300 125 no 0.000000 1 0.000000 0.000000 1.000000 28.100000 IGS_111 igs trnR|trnN trnR-trnN 109459 110129 0 671 IRb 0.004990 5 25 300 300 yes 1.000000 3 1.000000 0.005092 0.995529 66.100000 trnN tRNA trnN trnN 110130 110203 -1 74 IRb 0.000000 0 0 273 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_112 igs trnN|ycf1 trnN-ycf1 110204 110552 0 349 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.800000 ycf1 gene ycf1 ycf1 110553 112274 1 1722 IRb 0.001936 5 10 300 1 no 0.333333 2 0.500000 0.001947 1.000000 32.800000 IGS_113 igs ycf1|ndhF ycf1-ndhF 112275 112368 0 94 SSC 0.119048 10 38 2 135 yes 1.000000 3 1.000000 0.119048 0.595745 67.600000 ndhF gene ndhF ndhF 112369 114648 -1 2280 SSC 0.008187 28 0 11 26 yes 1.000000 3 1.000000 0.008187 1.000000 48.200000 IGS_114 igs ndhF|trnL ndhF-trnL 114649 115261 0 613 SSC 0.006525 6 0 10 110 no 1.000000 3 1.000000 0.006525 1.000000 48.700000 IGS_115 igs trnL|ccsA trnL-ccsA 115342 115472 0 131 SSC 0.006116 1 22 167 300 no 1.000000 3 1.000000 0.006116 0.832061 54.400000 ccsA gene ccsA ccsA 115473 116438 1 966 SSC 0.003451 5 0 100 68 no 0.333333 2 0.500000 0.003451 1.000000 38.500000 IGS_116 igs ccsA|ndhD ccsA-ndhD 116439 116689 0 251 SSC 0.005312 2 1 102 300 no 0.333333 2 0.500000 0.005333 1.000000 36.500000 ndhD gene ndhD ndhD 116690 118210 -1 1521 SSC 0.002192 5 0 146 300 no 0.333333 2 0.500000 0.002192 1.000000 43.600000 IGS_117 igs ndhD|psaC ndhD-psaC 118211 118341 0 131 SSC 0.000000 0 22 220 192 no 0.333333 2 0.500000 0.000000 0.832061 40.100000 psaC gene psaC psaC 118342 118587 -1 246 SSC 0.002710 1 0 300 1 no 0.333333 2 0.500000 0.002710 1.000000 26.800000 IGS_118 igs psaC|ndhE psaC-ndhE 118588 118833 0 246 SSC 0.010840 4 0 53 27 no 1.000000 3 1.000000 0.010840 1.000000 46.400000 ndhE gene ndhE ndhE 118834 119139 -1 306 SSC 0.013072 6 0 45 1 no 0.333333 2 0.500000 0.013072 1.000000 33.500000 IGS_119 igs ndhE|ndhG ndhE-ndhG 119140 119364 0 225 SSC 0.014815 5 0 8 300 no 0.333333 2 0.500000 0.014815 1.000000 35.000000 ndhG gene ndhG ndhG 119365 119895 -1 531 SSC 0.003766 3 0 12 60 no 0.333333 2 0.500000 0.003766 1.000000 33.100000 IGS_120 igs ndhG|ndhI ndhG-ndhI 119896 120339 0 444 SSC 0.014493 9 31 66 27 no 1.000000 3 1.000000 0.014528 0.932432 55.600000 ndhI gene ndhI ndhI 120340 120870 -1 531 SSC 0.002511 2 0 33 295 no 0.333333 2 0.500000 0.002511 1.000000 33.900000 IGS_121 igs ndhI|ndhA ndhI-ndhA 120871 120944 0 74 SSC 0.000000 0 0 97 221 no 0.000000 1 0.000000 0.000000 1.000000 26.000000 ndhA gene ndhA ndhA 120945 123114 -1 2170 SSC 0.005837 19 2 171 300 no 0.333333 2 0.500000 0.005843 1.000000 46.500000 IGS_122 igs ndhA|ndhH ndhA-ndhH 123115 123115 0 1 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 ndhH gene ndhH ndhH 123116 124297 -1 1182 SSC 0.000564 1 0 300 23 no 0.333333 2 0.500000 0.000564 1.000000 33.300000 IGS_123 igs ndhH|ycf1 ndhH-ycf1 124298 125139 0 842 SSC 0.011876 15 1 300 78 no 0.333333 2 0.500000 0.011891 1.000000 44.800000 ycf1 gene ycf1 ycf1 125140 130257 -1 5118 SSC 0.005341 41 0 108 35 no 0.333333 2 0.500000 0.005341 1.000000 31.000000 IGS_124 igs ycf1|trnN ycf1-trnN 130258 130975 0 718 IRa 0.000929 1 0 300 300 no 0.333333 2 0.500000 0.000929 1.000000 46.800000 trnN tRNA trnN trnN 130976 131049 1 74 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_125 igs trnN|trnR trnN-trnR 131050 131720 0 671 IRa 0.003992 4 25 300 300 yes 1.000000 3 1.000000 0.004060 0.995529 65.500000 trnR tRNA trnR trnR 131721 131795 -1 75 IRa 0.000000 0 0 125 300 no 0.000000 1 0.000000 0.000000 1.000000 28.100000 IGS_126 igs trnR|rrn5S trnR-rrn5S 131796 132040 0 245 IRa 0.000000 0 0 200 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn5S rRNA rrn5S rrn5S 132041 132161 -1 121 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_127 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 132162 132388 0 227 IRa 0.000000 0 0 300 178 no 0.000000 1 0.000000 0.000000 1.000000 32.100000 rrn4.5S rRNA rrn4.5S rrn4.5S 132389 132491 -1 103 IRa 0.000000 0 0 300 75 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 IGS_128 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 132492 132589 0 98 IRa 0.006803 1 0 300 300 no 0.333333 2 0.500000 0.006803 1.000000 44.300000 rrn23S rRNA rrn23S rrn23S 132590 135399 -1 2810 IRa 0.000000 0 0 22 300 no 0.000000 1 0.000000 0.000000 1.000000 23.900000 IGS_129 igs rrn23S|trnA rrn23S-trnA 135400 135551 0 152 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 135552 135586 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 136392 136429 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_132 igs trnA|trnI trnA-trnI 136430 136493 0 64 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 136494 136528 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 137478 137509 -1 32 IRa 0.000000 0 0 300 150 no 0.000000 1 0.000000 0.000000 1.000000 30.000000 IGS_135 igs trnI|rrn16S trnI-rrn16S 137510 137809 0 300 IRa 0.002222 1 0 300 300 no 0.333333 2 0.500000 0.002222 1.000000 41.400000 rrn16S rRNA rrn16S rrn16S 137810 139300 -1 1491 IRa 0.000000 0 0 149 161 no 0.000000 1 0.000000 0.000000 1.000000 36.200000 IGS_136 igs rrn16S|trnV rrn16S-trnV 139301 139525 0 225 IRa 0.002963 1 0 300 300 no 0.333333 2 0.500000 0.002963 1.000000 41.900000 IGS_137 igs trnV|rps12 trnV-rps12 139598 141470 0 1873 IRa 0.001786 5 18 135 300 no 1.000000 3 1.000000 0.001797 0.996263 55.300000 rps12_part2 gene rps12 rps12 141471 142264 1 794 IRa 0.000840 1 0 300 300 no 0.333333 2 0.500000 0.000840 1.000000 46.800000 IGS_138 igs rps12|rps7 rps12-rps7 142265 142322 0 58 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 142323 142790 1 468 IRa 0.001425 1 0 300 161 no 0.333333 2 0.500000 0.001425 1.000000 41.500000 IGS_139 igs rps7|ndhB rps7-ndhB 142791 143110 0 320 IRa 0.002083 1 0 29 165 no 0.333333 2 0.500000 0.002083 1.000000 28.900000 ndhB gene ndhB ndhB 143111 145325 1 2215 IRa 0.000602 2 0 158 224 no 0.333333 2 0.500000 0.000602 1.000000 42.000000 IGS_140 igs ndhB|trnL ndhB-trnL 145326 145894 0 569 IRa 0.001172 1 0 36 300 no 0.333333 2 0.500000 0.001172 1.000000 34.100000 IGS_141 igs trnL|ycf2 trnL-ycf2 145978 146996 0 1019 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 ycf2 gene ycf2 ycf2 146997 153848 -1 6852 IRa 0.000876 9 0 300 201 no 0.333333 2 0.500000 0.000876 1.000000 40.600000 IGS_142 igs ycf2|trnM ycf2-trnM 153849 153942 0 94 IRa 0.000000 0 0 37 107 no 0.000000 1 0.000000 0.000000 1.000000 21.500000 trnM tRNA trnM trnM 153943 154017 1 75 IRa 0.000000 0 0 131 32 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_143 igs trnM|rpl23 trnM-rpl23 154018 154181 0 164 IRa 0.008130 2 0 206 300 no 0.333333 2 0.500000 0.008130 1.000000 45.200000 rpl23 gene rpl23 rpl23 154182 154463 1 282 IRa 0.000000 0 0 5 296 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_144 igs rpl23|rpl2 rpl23-rpl2 154464 154481 0 18 IRa 0.000000 0 0 287 278 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 154482 155974 1 1493 IRa 0.002679 6 0 300 78 no 0.333333 2 0.500000 0.002679 1.000000 38.800000 IGS_145 igs rpl2|rps19 rpl2-rps19 155975 156040 0 66 IRa 0.000000 0 0 111 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 rps19 gene rps19 rps19 156041 156319 1 279 IRa 0.002389 1 0 177 78 yes 0.333333 2 0.500000 0.002389 1.000000 32.400000 IGS_146 igs rps19|trnH rps19-trnH 156320 87 0 319 IRa 0.040650 15 115 266 181 no 1.000000 3 1.000000 0.049020 0.771160 72.900000