primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score rps16-trnQ-UUG_p1 rps16-trnQ-UUG 1 AAGTCGCACGTTGCTTTCTA GAGGTTCGAATCCTTCCGTC 20 20 45.0 55.0 58.1 58.1 8.1 16.9 0.215425 6462 8199 1806-1811 1.000000 79.2 rps16-trnQ-UUG_p2 rps16-trnQ-UUG 2 TCATGTCCTTCAAGTCGCAC GAGGTTCGAATCCTTCCGTC 20 20 50.0 55.0 58.2 58.1 0.0 16.9 0.280333 6462 8199 1817-1822 1.000000 78.7 rps16-trnQ-UUG_p3 rps16-trnQ-UUG 3 CGGTGGGTGTAAGAATCCAC GAGGTTCGAATCCTTCCGTC 20 20 55.0 55.0 58.3 58.1 0.0 16.9 0.341938 6462 8199 1843-1848 1.000000 78.2 rps16-trnQ-UUG_p4 rps16-trnQ-UUG 4 AACGGTGGGTGTAAGAATCC GAGGTTCGAATCCTTCCGTC 20 20 50.0 55.0 57.5 58.1 0.0 16.9 0.560843 6462 8199 1845-1850 1.000000 76.4 rps16-trnQ-UUG_p5 rps16-trnQ-UUG 5 ACGGTGGGTGTAAGAATCCA GAGGTTCGAATCCTTCCGTC 20 20 50.0 55.0 58.6 58.1 0.0 16.9 0.722000 6462 8199 1844-1849 1.000000 75.1 trnR-UCU-atpA_p1 trnR-UCU-atpA 1 AGCCTTCCAAGCTAACGATG TTCCACCAAGACATTCACCG 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.138962 11217 11584 805-813 1.000000 80.3 trnR-UCU-atpA_p2 trnR-UCU-atpA 2 AGCCTTCCAAGCTAACGATG GCTTATCCGGGGGATGTTTT 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.097204 11217 11584 1380-1388 1.000000 80.1 trnR-UCU-atpA_p3 trnR-UCU-atpA 3 AGCCTTCCAAGCTAACGATG GATCCCTCCAAACAAGCACA 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.120138 11217 11584 1449-1457 1.000000 79.9 trnR-UCU-atpA_p4 trnR-UCU-atpA 4 AGCCTTCCAAGCTAACGATG TGATCCCTCCAAACAAGCAC 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.120138 11217 11584 1450-1458 1.000000 79.9 trnR-UCU-atpA_p5 trnR-UCU-atpA 5 CCTAGCCTTCCAAGCTAACG GCTTATCCGGGGGATGTTTT 20 20 55.0 50.0 58.1 57.9 0.0 0.0 0.126040 11217 11584 1383-1391 1.000000 79.9 rpoB-trnC-GCA_p1 rpoB-trnC-GCA 1 CTCTCATTTCCACCCCCAAG GCGTCTTTTGTTGATGAGGC 20 20 55.0 50.0 57.9 58.0 0.0 0.0 0.165686 28548 29742 1302-1308 1.000000 79.6 rpoB-trnC-GCA_p2 rpoB-trnC-GCA 2 CTCTCATTTCCACCCCCAAG CCGGATTTGAACTGGGGAAA 20 20 55.0 50.0 57.9 58.1 0.0 0.0 0.216917 28548 29742 1277-1283 1.000000 79.2 rpoB-trnC-GCA_p3 rpoB-trnC-GCA 3 TCTCTCATTTCCACCCCCAA GCGTCTTTTGTTGATGAGGC 20 20 50.0 50.0 58.2 58.0 0.0 0.0 0.276994 28548 29742 1303-1309 1.000000 78.7 rpoB-trnC-GCA_p4 rpoB-trnC-GCA 4 TTCTCTCATTTCCACCCCCA GCGTCTTTTGTTGATGAGGC 20 20 50.0 50.0 58.2 58.0 0.0 0.0 0.276994 28548 29742 1304-1310 1.000000 78.7 rpoB-trnC-GCA_p5 rpoB-trnC-GCA 5 TCTCTCATTTCCACCCCCAA CCGGATTTGAACTGGGGAAA 20 20 50.0 50.0 58.2 58.1 0.0 0.0 0.328225 28548 29742 1278-1284 1.000000 78.3 psbM-trnD-GUC_p1 psbM-trnD-GUC 1 AAAAAGGCGGTAGGAACGAG TTCAATTGGTCAGAGCACCG 20 20 50.0 50.0 58.2 58.5 0.0 5.4 0.672731 31976 33049 1203-1203 1.000000 85.9 psbM-trnD-GUC_p2 psbM-trnD-GUC 2 GCGGTAGGAACGAGAATGAA TTCAATTGGTCAGAGCACCG 20 20 50.0 50.0 57.7 58.5 0.0 5.4 0.766292 31976 33049 1197-1197 1.000000 85.2 psbM-trnD-GUC_p3 psbM-trnD-GUC 3 ACGAGAATGAACAGTGCAGT TTCAATTGGTCAGAGCACCG 20 20 45.0 50.0 57.5 58.5 0.0 5.4 1.010598 31976 33049 1188-1188 1.000000 83.3 psbM-trnD-GUC_p4 psbM-trnD-GUC 4 AAAAAGGCGGTAGGAACGAG GTTCAATTGGTCAGAGCACC 20 20 50.0 50.0 58.2 57.0 0.0 5.4 1.192884 31976 33049 1204-1204 1.000000 81.7 psbM-trnD-GUC_p5 psbM-trnD-GUC 5 AAGGCGGTAGGAACGAGAAT TTCAATTGGTCAGAGCACCG 20 20 50.0 50.0 58.8 58.5 0.0 5.4 1.284903 31976 33049 1200-1200 1.000000 81.0 trnE-UUC-trnT-GGU_p1 trnE-UUC-trnT-GGU 1 CGTAGTACTCTACCCCCAGG GAACCGATGACTTACGCCTT 20 20 60.0 50.0 58.0 58.0 0.0 0.0 0.027516 33652 34566 1048-1053 1.000000 80.8 trnE-UUC-trnT-GGU_p2 trnE-UUC-trnT-GGU 2 CGTAGTACTCTACCCCCAGG CCATGGCGTTACTCTACCAC 20 20 60.0 55.0 58.0 58.1 0.0 0.0 0.085613 33652 34566 1027-1032 1.000000 80.4 trnE-UUC-trnT-GGU_p3 trnE-UUC-trnT-GGU 3 CGTAGTACTCTACCCCCAGG TGGCGTTACTCTACCACTGA 20 20 60.0 50.0 58.0 58.1 0.0 0.0 0.107768 33652 34566 1024-1029 1.000000 80.2 trnE-UUC-trnT-GGU_p4 trnE-UUC-trnT-GGU 4 CGTAGTACTCTACCCCCAGG CCGATGACTTACGCCTTACC 20 20 60.0 55.0 58.0 58.2 0.0 0.0 0.172449 33652 34566 1045-1050 1.000000 79.7 trnE-UUC-trnT-GGU_p5 trnE-UUC-trnT-GGU 5 GCTGCCTCCTTGAAAGAGAG GAACCGATGACTTACGCCTT 20 20 55.0 50.0 58.3 58.0 0.0 0.0 0.269359 33652 34566 1013-1018 1.000000 78.9 trnT-GGU-psbD_p1 trnT-GGU-psbD 1 GTGGTAGAGTAACGCCATGG ACAAAAACGAAACGGTCCCT 20 20 55.0 45.0 58.1 58.2 7.6 0.0 0.310137 34639 36155 1667-1667 1.000000 78.3 trnT-GGU-psbD_p2 trnT-GGU-psbD 2 GTGGTAGAGTAACGCCATGG GACCGGACCAACCTACAAAA 20 20 55.0 50.0 58.1 57.7 7.6 9.5 0.323334 34639 36155 1681-1681 1.000000 78.2 trnT-GGU-psbD_p3 trnT-GGU-psbD 3 TCAGTGGTAGAGTAACGCCA ACAAAAACGAAACGGTCCCT 20 20 50.0 45.0 58.1 58.2 0.0 0.0 0.332292 34639 36155 1670-1670 1.000000 78.2 trnT-GGU-psbD_p4 trnT-GGU-psbD 4 TCAGTGGTAGAGTAACGCCA GACCGGACCAACCTACAAAA 20 20 50.0 50.0 58.1 57.7 0.0 9.5 0.345488 34639 36155 1684-1684 1.000000 78.0 trnT-GGU-psbD_p5 trnT-GGU-psbD 5 GTGGTAGAGTAACGCCATGG TAGACCGGACCAACCTACAA 20 20 55.0 50.0 58.1 57.7 7.6 9.5 0.371563 34639 36155 1683-1683 1.000000 77.8 psaA_p1 psaA 1 AGCTAAGCCTTGGCTAAACC GCGGGTCTCTTTGTATGTGT 20 20 50.0 50.0 57.9 57.9 14.2 0.0 0.225034 43086 45338 2359-2359 1.000000 78.3 psaA_p2 psaA 2 GCTAAGCCTTGGCTAAACCT GCGGGTCTCTTTGTATGTGT 20 20 50.0 50.0 57.9 57.9 15.1 0.0 0.225034 43086 45338 2358-2358 1.000000 78.3 psaA_p3 psaA 3 AATACGACGAGTAGTGGGGT GCGGGTCTCTTTGTATGTGT 20 20 50.0 50.0 57.9 57.9 0.0 0.0 0.229551 43086 45338 2383-2383 1.000000 78.3 psaA_p4 psaA 4 GTAGTGGGGTCCTGAGCTAA GCGGGTCTCTTTGTATGTGT 20 20 55.0 50.0 58.1 57.9 0.0 0.0 0.232780 43086 45338 2373-2373 1.000000 78.2 psaA_p5 psaA 5 GCTAAGCCTTGGCTAAACCT TTGGCGGGTCTCTTTGTATG 20 20 50.0 50.0 57.9 57.9 15.1 0.0 0.238222 43086 45338 2361-2361 1.000000 78.2 rps4_p1 rps4 1 GAGGCCAAAATTGTCCGAAC ACTTTACTGGATTTCGCTTCA 20 21 50.0 38.1 57.7 55.5 5.0 0.0 3.815822 48867 49472 731-731 1.000000 49.8 rps4_p2 rps4 2 GGAGGCCAAAATTGTCCGAA ACTTTACTGGATTTCGCTTCA 20 21 50.0 38.1 58.7 55.5 5.0 0.0 4.215025 48867 49472 732-732 1.000000 46.6 rps4_p3 rps4 3 GAGGCCAAAATTGTCCGAAC ACTTTACTGGATTTCGCTTCAT 20 22 50.0 36.4 57.7 56.1 5.0 0.0 4.270533 48867 49472 731-731 1.000000 46.2 rps4_p4 rps4 4 CCAAAATTGTCCGAACCCTTG ACTTTACTGGATTTCGCTTCA 21 21 47.6 38.1 58.0 55.5 0.0 0.0 4.493412 48867 49472 727-727 1.000000 44.4 rps4_p5 rps4 5 GCCAAAATTGTCCGAACCCT ACTTTACTGGATTTCGCTTCA 20 21 50.0 38.1 59.0 55.5 0.0 0.0 4.501946 48867 49472 728-728 1.000000 44.3 trnT-UGU-trnL-UAA_p1 trnT-UGU-trnL-UAA 1 GCGATGCTCTAACCTCTGAG CCGTAGCGTCTACCGATTTC 20 20 55.0 55.0 57.9 58.2 0.0 10.2 0.381189 49896 50549 604-716 1.000000 81.4 trnT-UGU-trnL-UAA_p2 trnT-UGU-trnL-UAA 2 GGAATCGAACCGATGACCAT CCGTAGCGTCTACCGATTTC 20 20 50.0 55.0 57.8 58.2 15.5 10.2 0.488942 49896 50549 636-748 1.000000 80.5 trnT-UGU-trnL-UAA_p3 trnT-UGU-trnL-UAA 3 GCGATGCTCTAACCTCTGAG CGTCTACCGATTTCGCCATA 20 20 55.0 50.0 57.9 57.6 0.0 0.0 0.543526 49896 50549 598-710 1.000000 80.1 trnT-UGU-trnL-UAA_p4 trnT-UGU-trnL-UAA 4 GCGATGCTCTAACCTCTGAG GGTTTCCATACCAAGGCTCA 20 20 55.0 50.0 57.9 57.5 0.0 0.0 0.640147 49896 50549 636-748 1.000000 79.3 trnT-UGU-trnL-UAA_p5 trnT-UGU-trnL-UAA 5 GGAATCGAACCGATGACCAT CGTCTACCGATTTCGCCATA 20 20 50.0 50.0 57.8 57.6 15.5 0.0 0.651279 49896 50549 630-742 1.000000 79.2 trnF-GAA-ndhJ_p1 trnF-GAA-ndhJ 1 CCTCGTGTCACCAGTTCAAA CCTGAAAGTTGGGTGGGATG 20 20 50.0 55.0 58.1 58.5 0.0 0.0 0.502692 51522 52249 736-840 1.000000 80.3 trnF-GAA-ndhJ_p2 trnF-GAA-ndhJ 2 CCTCGTGTCACCAGTTCAAA CTGAAAGTTGGGTGGGATGG 20 20 50.0 55.0 58.1 58.5 0.0 0.0 0.502692 51522 52249 735-839 1.000000 80.3 trnF-GAA-ndhJ_p3 trnF-GAA-ndhJ 3 CCTCGTGTCACCAGTTCAAA TAATCATCCCCGCCTAAAGC 20 20 50.0 50.0 58.1 57.4 0.0 0.0 0.613374 51522 52249 767-871 1.000000 79.4 trnF-GAA-ndhJ_p4 trnF-GAA-ndhJ 4 CCTCGTGTCACCAGTTCAAA AATGCCTGAAAGTTGGGTGG 20 20 50.0 50.0 58.1 58.7 0.0 0.0 0.710815 51522 52249 740-844 1.000000 78.6 trnF-GAA-ndhJ_p5 trnF-GAA-ndhJ 5 TCGGGATAGCTCAGTTGGTA CTGAAAGTTGGGTGGGATGG 20 20 50.0 55.0 57.6 58.5 0.0 0.0 0.898205 51522 52249 773-877 1.000000 77.1 rpl16_p1 rpl16 1 CTCAAACAAAGACCGCTTTCC AGACTAAGAAATGACAAATCGGTC 21 24 47.6 37.5 58.0 57.0 0.0 0.0 5.969910 83516 85007 1625-1627 1.000000 40.5 rpl16_p2 rpl16 2 CTCAAACAAAGACCGCTTTCC GACTAAGAAATGACAAATCGGTCT 21 24 47.6 37.5 58.0 57.0 0.0 0.0 5.969910 83516 85007 1624-1626 1.000000 40.5 rpl16_p3 rpl16 3 CTCAAACAAAGACCGCTTTCC ACTAAGAAATGACAAATCGGTCT 21 23 47.6 34.8 58.0 55.9 0.0 0.0 6.054825 83516 85007 1623-1625 1.000000 40.5 rpl16_p4 rpl16 4 CTCAAACAAAGACCGCTTTCC AGACTAAGAAATGACAAATCGGT 21 23 47.6 34.8 58.0 55.9 0.0 0.0 6.054825 83516 85007 1625-1627 1.000000 40.5 rpl16_p5 rpl16 5 TCATCTCAAACAAAGACCGCT GACTAAGAAATGACAAATCGGTCT 21 24 42.9 37.5 57.9 57.0 0.0 0.0 6.095829 83516 85007 1628-1630 1.000000 40.5 trnR-ACG-trnN-GUU_p1 trnR-ACG-trnN-GUU 1 CAGAGGATTAGAGCACGTGG CCGTTGTTCCTCAGTAGCTC 20 20 55.0 55.0 57.8 58.0 18.9 0.0 0.218238 110676 111292 759-759 1.000000 78.8 trnR-ACG-trnN-GUU_p2 trnR-ACG-trnN-GUU 2 GAACAGATCCAGTGGAGACG CCGTTGTTCCTCAGTAGCTC 20 20 55.0 55.0 57.7 58.0 18.7 0.0 0.288158 110676 111292 796-796 1.000000 78.2 trnR-ACG-trnN-GUU_p3 trnR-ACG-trnN-GUU 3 CAGAGGATTAGAGCACGTGG TGGTCGTAGGTTCGAATCCT 20 20 55.0 50.0 57.8 58.2 18.9 18.9 0.372539 110676 111292 710-710 1.000000 77.6 trnR-ACG-trnN-GUU_p4 trnR-ACG-trnN-GUU 4 CAGAGGATTAGAGCACGTGG CTGGTCGTAGGTTCGAATCC 20 20 55.0 55.0 57.8 57.8 18.9 4.4 0.421214 110676 111292 711-711 1.000000 77.2 trnR-ACG-trnN-GUU_p5 trnR-ACG-trnN-GUU 5 GAACAGATCCAGTGGAGACG TGGTCGTAGGTTCGAATCCT 20 20 55.0 50.0 57.7 58.2 18.7 18.9 0.442458 110676 111292 747-747 1.000000 77.0 ndhF-rpl32_p1 ndhF-rpl32 1 TGTTGCCGTCGGAAAAAGTA AAAAGCTTTCAACGCTGCTC 20 20 45.0 45.0 58.0 57.9 17.5 13.1 0.174633 115117 115753 829-832 1.000000 79.7 ndhF-rpl32_p2 ndhF-rpl32 2 TGTTGCCGTCGGAAAAAGTA CGCCCTTTGCTTTTCCAAAT 20 20 45.0 45.0 58.0 57.8 17.5 0.0 0.217498 115117 115753 807-810 1.000000 79.3 ndhF-rpl32_p3 ndhF-rpl32 3 TTTGTTGCCGTCGGAAAAAG AAAAGCTTTCAACGCTGCTC 20 20 45.0 45.0 57.8 57.9 17.5 13.1 0.321756 115117 115753 831-834 1.000000 78.5 ndhF-rpl32_p4 ndhF-rpl32 4 TTTGTTGCCGTCGGAAAAAG CGCCCTTTGCTTTTCCAAAT 20 20 45.0 45.0 57.8 57.8 17.5 0.0 0.364621 115117 115753 809-812 1.000000 78.2 ndhF-rpl32_p5 ndhF-rpl32 5 TGTTGCCGTCGGAAAAAGTA GCGAAAAAGCTTTCAACGCT 20 20 45.0 45.0 58.0 58.5 17.5 30.9 0.572067 115117 115753 833-836 1.000000 76.5 rpl32-trnL-UAG_p1 rpl32-trnL-UAG 1 GAGCAGCGTTGAAAGCTTTT AGCGTGTCTACCGATTTCAC 20 20 45.0 50.0 57.9 58.0 14.0 0.0 0.133292 115916 117101 1301-1302 1.000000 80.2 rpl32-trnL-UAG_p2 rpl32-trnL-UAG 2 GAGCAGCGTTGAAAGCTTTT CAGCGTGTCTACCGATTTCA 20 20 45.0 50.0 57.9 58.0 14.0 0.0 0.134662 115916 117101 1302-1303 1.000000 80.2 rpl32-trnL-UAG_p3 rpl32-trnL-UAG 3 GAGCAGCGTTGAAAGCTTTT CCCTTTTCTGACGAAGCGTA 20 20 45.0 50.0 57.9 57.9 14.0 0.0 0.200008 115916 117101 1597-1600 1.000000 79.8 rpl32-trnL-UAG_p4 rpl32-trnL-UAG 4 GAGCAGCGTTGAAAGCTTTT AATACAAAATGCCATGCCGC 20 20 45.0 45.0 57.9 58.1 14.0 0.0 0.186836 115916 117101 1366-1367 1.000000 79.7 rpl32-trnL-UAG_p5 rpl32-trnL-UAG 5 GAGCAGCGTTGAAAGCTTTT GGGGACTAAGAGTGGGGATT 20 20 45.0 55.0 57.9 58.1 14.0 0.0 0.230762 115916 117101 1859-1862 1.000000 79.5 ccsA_p1 ccsA 1 GTGAAATCGGTAGACACGCT CAGTTGACAAGGTCGAAGCT 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.136750 117298 118269 1358-1361 1.000000 79.7 ccsA_p2 ccsA 2 TGAAATCGGTAGACACGCTG CAGTTGACAAGGTCGAAGCT 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.138121 117298 118269 1357-1360 1.000000 79.7 ccsA_p3 ccsA 3 GTGAAATCGGTAGACACGCT TCAGTTGACAAGGTCGAAGC 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.141965 117298 118269 1359-1362 1.000000 79.7 ccsA_p4 ccsA 4 TGAAATCGGTAGACACGCTG TCAGTTGACAAGGTCGAAGC 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.143336 117298 118269 1358-1361 1.000000 79.7 ccsA_p5 ccsA 5 GAGAAAGCCGCTATGGTGAA CAGTTGACAAGGTCGAAGCT 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.153095 117298 118269 1373-1376 1.000000 79.6 ycf1_p1 ycf1 1 TCGATCTTCATCTTCTGACT TCTAGTGAGAACGTTTGGACA 20 21 40.0 42.9 53.2 56.6 0.0 0.5 7.139852 130581 130700 246-246 1.000000 42.3 ycf1_p2 ycf1 2 TCGATCTTCATCTTCTGACTT TCTAGTGAGAACGTTTGGACA 21 21 38.1 42.9 54.1 56.6 0.0 0.5 7.234794 130581 130700 246-246 1.000000 42.3 ycf1_p3 ycf1 3 TTCGATCTTCATCTTCTGACT TCTAGTGAGAACGTTTGGACA 21 21 38.1 42.9 54.1 56.6 0.0 0.5 7.234794 130581 130700 247-247 1.000000 42.3 ycf1_p4 ycf1 4 TCGATCTTCATCTTCTGACT AGTGAGAACGTTTGGACAAA 20 20 40.0 40.0 53.2 55.4 0.0 0.5 7.326517 130581 130700 243-243 1.000000 42.3 ycf1_p5 ycf1 5 TTCGATCTTCATCTTCTGACTT TCTAGTGAGAACGTTTGGACA 22 21 36.4 42.9 55.0 56.6 0.0 0.5 7.411544 130581 130700 247-247 1.000000 42.3 trnN-GUU-trnR-ACG_p1 trnN-GUU-trnR-ACG 1 CCGTTGTTCCTCAGTAGCTC CAGAGGATTAGAGCACGTGG 20 20 55.0 55.0 58.0 57.8 0.0 18.9 0.218238 132747 133363 759-759 1.000000 78.8 trnN-GUU-trnR-ACG_p2 trnN-GUU-trnR-ACG 2 CCGTTGTTCCTCAGTAGCTC GAACAGATCCAGTGGAGACG 20 20 55.0 55.0 58.0 57.7 0.0 18.7 0.288158 132747 133363 796-796 1.000000 78.2 trnN-GUU-trnR-ACG_p3 trnN-GUU-trnR-ACG 3 TGGTCGTAGGTTCGAATCCT CAGAGGATTAGAGCACGTGG 20 20 50.0 55.0 58.2 57.8 18.9 18.9 0.372539 132747 133363 710-710 1.000000 77.6 trnN-GUU-trnR-ACG_p4 trnN-GUU-trnR-ACG 4 CTGGTCGTAGGTTCGAATCC CAGAGGATTAGAGCACGTGG 20 20 55.0 55.0 57.8 57.8 4.4 18.9 0.421214 132747 133363 711-711 1.000000 77.2 trnN-GUU-trnR-ACG_p5 trnN-GUU-trnR-ACG 5 TGGTCGTAGGTTCGAATCCT GAACAGATCCAGTGGAGACG 20 20 50.0 55.0 58.2 57.7 18.9 18.7 0.442458 132747 133363 747-747 1.000000 77.0