feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score psbA gene psbA psbA 146 1207 -1 1062 LSC 0.001883 6 0 13 15 no 0.428571 5 0.600000 0.001883 1.000000 35.600000 IGS_001 igs psbA|trnK-UUU psbA-trnK-UUU 1208 1476 0 269 LSC 0.006859 5 188 89 188 no 0.714286 6 0.833333 0.006366 0.988848 47.000000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1477 1511 -1 35 LSC 0.000000 0 35 60 153 no 0.142857 2 0.500000 0.000000 1.000000 27.700000 matK gene matK matK 1753 3258 -1 1506 LSC 0.012022 43 498 22 22 no 1.000000 7 1.000000 0.012086 1.000000 59.100000 IGS_004 igs matK|trnK-UUU matK-trnK-UUU 3259 3987 0 729 LSC 0.016173 36 280 4 37 no 0.714286 6 0.833333 0.020038 1.000000 56.400000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 3988 4024 -1 37 LSC 0.000000 0 0 86 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_005 igs trnK-UUU|rps16 trnK-UUU-rps16 4025 4418 0 394 LSC 0.036476 31 379 123 2 no 1.000000 7 1.000000 0.042181 0.944162 65.200000 rps16 gene rps16 rps16 4419 5499 -1 1081 LSC 0.011308 27 848 25 6 no 1.000000 7 1.000000 0.009959 0.998150 54.200000 IGS_006 igs rps16|psbK rps16-psbK 5500 5816 0 317 LSC 0.014331 12 188 91 10 no 1.000000 7 1.000000 0.015940 1.000000 52.000000 psbK gene psbK psbK 5817 5999 1 183 LSC 0.009368 4 0 58 42 no 0.428571 5 0.600000 0.009368 1.000000 36.900000 IGS_007 igs psbK|psbI psbK-psbI 6000 6425 0 426 LSC 0.010060 10 10 114 89 no 0.714286 6 0.833333 0.010246 1.000000 51.500000 psbI gene psbI psbI 6426 6536 1 111 LSC 0.005148 1 0 52 7 no 0.000000 2 0.000000 0.005148 1.000000 22.700000 IGS_008 igs psbI|trnS-GCU psbI-trnS-GCU 6537 6679 0 143 LSC 0.014652 7 78 21 148 no 0.571429 5 0.800000 0.023310 1.000000 47.600000 trnS-GCU tRNA trnS-GCU trnS-GCU 6680 6767 -1 88 LSC 0.000000 0 0 15 60 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_009 igs trnS-GCU|trnG-UCC trnS-GCU-trnG-UCC 6768 7426 0 659 LSC 0.016768 28 336 103 68 no 1.000000 7 1.000000 0.013170 0.987860 64.000000 trnG-UCC_part1 tRNA trnG-UCC trnG-UCC 7427 7449 1 23 LSC 0.000000 0 0 8 45 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 trnG-UCC_part2 tRNA trnG-UCC trnG-UCC 8168 8184 1 17 LSC 0.000000 0 0 10 0 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_012 igs trnG-UCC|trnR-UCU trnG-UCC-trnR-UCU 8185 8349 0 165 LSC 0.031746 13 149 27 72 no 0.714286 6 0.833333 0.022222 1.000000 60.500000 trnR-UCU tRNA trnR-UCU trnR-UCU 8350 8421 1 72 LSC 0.000000 0 72 25 0 no 0.142857 2 0.500000 0.000000 1.000000 23.200000 IGS_013 igs trnR-UCU|atpA trnR-UCU-atpA 8422 8580 0 159 LSC 0.053908 25 8 97 18 yes 1.000000 7 1.000000 0.054930 0.987421 79.500000 atpA gene atpA atpA 8581 10104 -1 1524 LSC 0.005562 22 31 1 0 no 1.000000 7 1.000000 0.005603 1.000000 50.500000 IGS_014 igs atpA|atpF atpA-atpF 10105 10170 0 66 LSC 0.025974 6 0 12 94 no 0.285714 3 0.666667 0.025974 1.000000 48.100000 atpF gene atpF atpF 10171 11484 -1 1314 LSC 0.006378 22 27 57 53 no 1.000000 7 1.000000 0.006414 1.000000 55.200000 IGS_015 igs atpF|atpH atpF-atpH 11485 11959 0 475 LSC 0.016090 24 48 91 26 no 1.000000 7 1.000000 0.016453 1.000000 62.400000 atpH gene atpH atpH 11960 12205 -1 246 LSC 0.025552 22 1 7 5 no 0.142857 2 0.500000 0.025656 1.000000 45.000000 IGS_016 igs atpH|atpI atpH-atpI 12206 13343 0 1138 LSC 0.017449 63 18 0 300 no 1.000000 7 1.000000 0.017564 0.992091 60.200000 atpI gene atpI atpI 13344 14087 -1 744 LSC 0.003264 5 92 125 49 no 0.714286 6 0.833333 0.003236 1.000000 50.100000 IGS_017 igs atpI|rps2 atpI-rps2 14088 14213 0 126 LSC 0.006047 2 0 65 145 no 0.285714 3 0.666667 0.006047 1.000000 33.700000 rps2 gene rps2 rps2 14214 14435 -1 222 LSC 0.005706 3 218 59 16 no 0.428571 5 0.600000 0.004891 1.000000 33.500000 IGS_018 igs rps2|rpoC2 rps2-rpoC2 14436 14643 0 208 LSC 0.010760 4 174 4 19 no 0.714286 6 0.833333 0.012223 0.990385 39.600000 rpoC2 gene rpoC2 rpoC2 14644 15753 -1 1110 LSC 0.009215 29 524 17 0 no 1.000000 7 1.000000 0.009614 1.000000 54.200000 IGS_019 igs rpoC2|rpoC1 rpoC2-rpoC1 15754 16639 0 886 LSC 0.016839 37 883 1 47 no 1.000000 7 1.000000 0.030011 1.000000 56.600000 rpoC1 gene rpoC1 rpoC1 16640 17810 -1 1171 LSC 0.010237 25 1171 46 0 no 1.000000 7 1.000000 0.008735 0.996584 51.000000 IGS_020 igs rpoC1|rpoB rpoC1-rpoB 17811 17916 0 106 LSC 0.050764 18 73 2 16 no 0.285714 3 0.666667 0.123785 1.000000 62.400000 rpoB gene rpoB rpoB 17917 17988 -1 72 LSC 0.026984 6 58 6 88 no 0.571429 5 0.800000 0.007407 1.000000 52.500000 IGS_021 igs rpoB|trnC-GCA rpoB-trnC-GCA 17989 18926 0 938 LSC 0.044974 70 594 16 84 no 1.000000 7 1.000000 0.023776 0.556503 69.000000 trnC-GCA tRNA trnC-GCA trnC-GCA 18927 18997 1 71 LSC 0.000000 0 71 25 13 no 0.142857 2 0.500000 0.000000 1.000000 24.200000 IGS_022 igs trnC-GCA|petN trnC-GCA-petN 18998 19921 0 924 LSC 0.027076 65 484 96 105 yes 1.000000 7 1.000000 0.022498 0.966450 74.000000 petN gene petN petN 19922 20011 1 90 LSC 0.000000 0 0 18 15 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_023 igs petN|psbM petN-psbM 20012 20772 0 761 LSC 0.009762 17 6 108 188 no 0.714286 6 0.833333 0.009785 1.000000 54.600000 psbM gene psbM psbM 20773 20877 -1 105 LSC 0.000000 0 0 117 83 no 0.000000 1 0.000000 0.000000 1.000000 25.000000 IGS_024 igs psbM|trnS-UGA psbM-trnS-UGA 20878 22207 0 1330 LSC 0.022947 77 497 222 0 no 1.000000 7 1.000000 0.021902 0.898496 62.000000 trnS-UGA tRNA trnS-UGA trnS-UGA 22208 22219 -1 12 LSC 0.071429 3 0 4 0 no 0.142857 2 0.500000 NA 1.000000 56.400000 IGS_025 igs trnS-UGA|psbZ trnS-UGA-psbZ 22220 22399 0 180 LSC 0.006614 4 2 2 49 no 0.571429 5 0.800000 0.006095 1.000000 36.700000 psbZ gene psbZ psbZ 22400 22588 1 189 LSC 0.002520 1 0 173 29 no 0.000000 2 0.000000 0.002520 1.000000 22.700000 IGS_026 igs psbZ|rps14 psbZ-rps14 22589 23014 0 426 LSC 0.022010 20 197 139 27 no 1.000000 7 1.000000 0.023706 0.992958 60.200000 rps14 gene rps14 rps14 23015 23317 -1 303 LSC 0.005029 4 0 42 65 no 0.428571 4 0.750000 0.005029 1.000000 33.900000 IGS_027 igs rps14|psaB rps14-psaB 23318 23435 0 118 LSC 0.009685 3 0 79 300 no 0.285714 4 0.500000 0.009685 1.000000 37.600000 psaB gene psaB psaB 23436 25640 -1 2205 LSC 0.003434 21 0 16 292 no 1.000000 7 1.000000 0.003434 1.000000 46.200000 IGS_028 igs psaB|psaA psaB-psaA 25641 25665 0 25 LSC 0.000000 0 0 155 267 no 0.000000 1 0.000000 0.000000 1.000000 30.400000 psaA gene psaA psaA 25666 27918 -1 2253 LSC 0.001987 9 1 180 59 no 0.714286 6 0.833333 0.001987 1.000000 42.700000 IGS_029 igs psaA|ycf3 psaA-ycf3 27919 28464 0 546 LSC 0.002512 4 300 224 100 no 1.000000 7 1.000000 0.002196 0.994505 53.200000 ycf3 gene ycf3 ycf3 28465 29748 -1 1284 LSC 0.004480 16 49 300 18 no 1.000000 7 1.000000 0.004210 1.000000 53.200000 IGS_030 igs ycf3|trnS-GGA ycf3-trnS-GGA 29749 30085 0 337 LSC 0.003561 2 337 34 88 no 1.000000 7 1.000000 0.003238 0.982196 43.200000 trnS-GGA tRNA trnS-GGA trnS-GGA 30086 30172 1 87 LSC 0.000000 0 87 34 1 no 0.285714 4 0.500000 0.000000 0.735632 20.900000 IGS_031 igs trnS-GGA|rps4 trnS-GGA-rps4 30173 30218 0 46 LSC 0.130435 14 39 121 300 yes 0.571429 5 0.800000 0.118331 1.000000 73.500000 rps4 gene rps4 rps4 30219 30560 -1 342 LSC 0.000000 0 190 16 42 no 0.142857 2 0.500000 0.000000 1.000000 27.300000 IGS_032 igs rps4|trnL-UAA rps4-trnL-UAA 30561 31128 0 568 LSC 0.014009 16 123 300 280 no 0.714286 6 0.833333 0.011451 0.933099 65.500000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 31129 31206 1 78 LSC 0.000000 0 5 59 202 no 0.000000 2 0.000000 0.000000 0.935897 27.200000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 31689 31738 1 50 LSC 0.005714 1 0 134 8 no 0.142857 2 0.500000 0.005714 1.000000 27.100000 IGS_035 igs trnL-UAA|ndhJ trnL-UAA-ndhJ 31739 32619 0 881 LSC 0.019918 47 73 0 291 no 1.000000 7 1.000000 0.017491 0.990919 64.900000 ndhJ gene ndhJ ndhJ 32620 33096 -1 477 LSC 0.002995 4 0 12 23 no 0.285714 4 0.500000 0.002995 1.000000 31.100000 IGS_036 igs ndhJ|ndhK ndhJ-ndhK 33097 33233 0 137 LSC 0.012513 3 0 37 14 no 0.000000 2 0.000000 0.012513 1.000000 28.200000 ndhK gene ndhK ndhK 33234 33917 -1 684 LSC 0.005848 9 0 41 27 no 0.714286 6 0.833333 0.005848 1.000000 44.700000 IGS_037 igs ndhK|ndhC ndhK-ndhC 33918 33977 0 60 LSC 0.004762 1 5 64 15 no 0.142857 3 0.333333 0.005195 0.916667 30.100000 ndhC gene ndhC ndhC 33978 34340 -1 363 LSC 0.009445 7 27 32 91 no 0.714286 6 0.833333 0.009351 1.000000 48.400000 IGS_038 igs ndhC|trnV-UAC ndhC-trnV-UAC 34341 35493 0 1153 LSC 0.023483 66 580 12 47 no 1.000000 7 1.000000 0.021649 0.991327 65.700000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 35494 35528 -1 35 LSC 0.000000 0 0 18 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 36113 36151 -1 39 LSC 0.000000 0 0 51 10 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_041 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 36152 36218 0 67 LSC 0.153660 24 46 90 0 no 0.714286 6 0.833333 0.157647 1.000000 67.100000 trnM-CAU tRNA trnM-CAU trnM-CAU 36219 36247 1 29 LSC 0.325287 18 29 1 5 no 0.714286 6 0.833333 0.331034 0.965517 66.800000 IGS_042 igs trnM-CAU|atpE trnM-CAU-atpE 36248 36456 0 209 LSC 0.012987 8 45 2 4 no 1.000000 7 1.000000 0.012357 1.000000 53.600000 atpE gene atpE atpE 36457 36858 -1 402 LSC 0.002843 4 0 8 52 no 0.428571 4 0.750000 0.002843 1.000000 32.000000 atpB gene atpB atpB 36855 38351 -1 1497 LSC 0.003308 13 0 272 23 no 0.714286 6 0.833333 0.003308 1.000000 42.700000 IGS_044 igs atpB|rbcL atpB-rbcL 38352 39065 0 714 LSC 0.011171 21 233 31 67 no 1.000000 7 1.000000 0.012815 0.973389 57.000000 rbcL gene rbcL rbcL 39066 40493 1 1428 LSC 0.002668 10 0 37 13 no 0.714286 6 0.833333 0.002668 1.000000 41.400000 IGS_045 igs rbcL|accD rbcL-accD 40494 41093 0 600 LSC 0.025186 36 549 123 24 no 1.000000 7 1.000000 0.014161 0.966667 64.000000 accD gene accD accD 41094 41489 1 396 LSC 0.009500 10 82 17 114 no 1.000000 7 1.000000 0.009290 0.997475 53.500000 IGS_046 igs accD|psaI accD-psaI 41490 42994 0 1505 LSC 0.004854 15 649 3 79 no 1.000000 7 1.000000 0.005086 1.000000 51.700000 psaI gene psaI psaI 42995 43105 1 111 LSC 0.004290 1 0 61 8 no 0.000000 2 0.000000 0.004290 1.000000 22.400000 IGS_047 igs psaI|ycf4 psaI-ycf4 43106 43539 0 434 LSC 0.015032 18 1 31 119 no 1.000000 7 1.000000 0.015042 1.000000 54.800000 ycf4 gene ycf4 ycf4 43540 44094 1 555 LSC 0.006017 8 1 19 3 no 1.000000 7 1.000000 0.006017 0.998198 47.700000 IGS_048 igs ycf4|cemA ycf4-cemA 44095 44968 0 874 LSC 0.010826 30 423 31 83 no 1.000000 7 1.000000 0.013854 0.919908 57.200000 cemA gene cemA cemA 44969 45658 1 690 LSC 0.005383 10 0 63 5 no 0.571429 5 0.800000 0.005383 1.000000 40.300000 IGS_049 igs cemA|petA cemA-petA 45659 45863 0 205 LSC 0.006504 3 0 75 161 no 0.285714 4 0.500000 0.006504 1.000000 34.500000 petA gene petA petA 45864 46832 1 969 LSC 0.002949 7 0 38 37 no 0.714286 6 0.833333 0.002949 1.000000 43.400000 IGS_050 igs petA|psbJ petA-psbJ 46833 47227 0 395 LSC 0.040628 36 90 300 286 yes 0.714286 6 0.833333 0.020095 0.992405 83.100000 psbJ gene psbJ psbJ 47228 47350 -1 123 LSC 0.000000 0 0 26 163 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_051 igs psbJ|psbL psbJ-psbL 47351 47468 0 118 LSC 0.000000 0 0 149 45 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 psbL gene psbL psbL 47469 47585 -1 117 LSC 0.004070 1 0 267 65 no 0.000000 2 0.000000 0.004070 1.000000 26.500000 IGS_052 igs psbL|psbF psbL-psbF 47586 47607 0 22 LSC 0.000000 0 0 71 43 no 0.000000 1 0.000000 0.000000 1.000000 22.000000 psbF gene psbF psbF 47608 47727 -1 120 LSC 0.004762 1 0 93 23 no 0.000000 2 0.000000 0.004762 1.000000 23.700000 IGS_053 igs psbF|psbE psbF-psbE 47728 47736 0 9 LSC 0.000000 0 0 76 14 no 0.000000 1 0.000000 NA 1.000000 19.800000 psbE gene psbE psbE 47737 47988 -1 252 LSC 0.020408 18 2 85 1 no 0.285714 3 0.666667 0.020564 1.000000 43.300000 IGS_054 igs psbE|petL psbE-petL 47989 48926 0 938 LSC 0.015758 42 45 23 4 no 1.000000 7 1.000000 0.015578 1.000000 62.500000 petL gene petL petL 48927 49022 1 96 LSC 0.004960 1 0 0 103 no 0.000000 2 0.000000 0.004960 1.000000 22.300000 IGS_055 igs petL|petG petL-petG 49023 49195 0 173 LSC 0.007707 3 0 91 123 no 0.142857 4 0.250000 0.007707 1.000000 33.900000 petG gene petG petG 49196 49309 1 114 LSC 0.000000 0 0 27 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_056 igs petG|trnW-CCA petG-trnW-CCA 49310 49456 0 147 LSC 0.021380 9 29 141 1 no 0.714286 6 0.833333 0.022574 1.000000 54.900000 trnW-CCA tRNA trnW-CCA trnW-CCA 49457 49471 -1 15 LSC 0.114286 6 0 0 0 no 0.142857 2 0.500000 NA 1.000000 56.400000 IGS_057 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 49472 49582 0 111 LSC 0.144779 49 79 0 1 no 0.428571 4 0.750000 0.126136 0.981982 64.200000 trnP-UGG tRNA trnP-UGG trnP-UGG 49583 49664 -1 82 LSC 0.134039 38 4 2 0 no 0.285714 3 0.666667 0.134898 0.987805 64.600000 IGS_058 igs trnP-UGG|psaJ trnP-UGG-psaJ 49665 50018 0 354 LSC 0.064241 46 109 5 26 yes 1.000000 7 1.000000 0.057504 0.867232 73.400000 psaJ gene psaJ psaJ 50019 50147 1 129 LSC 0.005906 2 0 36 61 no 0.142857 3 0.333333 0.005906 1.000000 28.700000 IGS_059 igs psaJ|rpl33 psaJ-rpl33 50148 50580 0 433 LSC 0.016892 22 7 68 7 no 1.000000 7 1.000000 0.016343 1.000000 56.700000 rpl33 gene rpl33 rpl33 50581 50781 1 201 LSC 0.014167 7 185 0 15 no 0.428571 5 0.600000 0.011609 1.000000 39.700000 IGS_060 igs rpl33|rps18 rpl33-rps18 50782 50963 0 182 LSC 0.018681 8 182 41 35 no 0.714286 6 0.833333 0.018776 0.994505 50.300000 rps18 gene rps18 rps18 50964 51269 1 306 LSC 0.001089 1 306 35 30 no 0.285714 3 0.666667 0.001089 1.000000 29.200000 IGS_061 igs rps18|rpl20 rps18-rpl20 51270 51544 0 275 LSC 0.012848 7 275 270 8 no 0.428571 5 0.600000 0.012848 1.000000 38.100000 rpl20 gene rpl20 rpl20 51545 51898 -1 354 LSC 0.005650 4 354 108 138 no 1.000000 7 1.000000 0.005650 1.000000 52.500000 IGS_062 igs rpl20|clpP rpl20-clpP 51899 52682 0 784 LSC 0.004346 6 784 225 68 no 0.714286 6 0.833333 0.004348 0.978316 47.400000 clpP gene clpP clpP 52683 53045 -1 363 LSC 0.007241 7 68 42 2 no 0.714286 6 0.833333 0.006621 1.000000 44.200000 IGS_063 igs clpP|psbB clpP-psbB 53046 53787 0 742 LSC 0.022139 49 497 0 221 no 1.000000 7 1.000000 0.032390 0.998652 63.000000 psbB gene psbB psbB 53788 55314 1 1527 LSC 0.002557 11 1 216 54 no 0.714286 6 0.833333 0.002558 1.000000 44.500000 IGS_064 igs psbB|psbT psbB-psbT 55315 55509 0 195 LSC 0.008889 4 11 210 111 no 0.714286 6 0.833333 0.008033 1.000000 52.900000 psbT gene psbT psbT 55510 55611 1 102 LSC 0.000000 0 1 80 9 no 0.000000 2 0.000000 0.000000 1.000000 20.500000 IGS_065 igs psbT|psbN psbT-psbN 55612 55648 0 37 LSC 0.036036 4 9 182 128 yes 0.571429 5 0.800000 0.041000 1.000000 71.900000 psbN gene psbN psbN 55649 55780 -1 132 LSC 0.003608 1 126 9 7 no 0.000000 2 0.000000 0.000000 1.000000 21.800000 IGS_066 igs psbN|psbH psbN-psbH 55781 55882 0 102 LSC 0.011765 3 99 3 14 no 0.285714 4 0.500000 0.011765 1.000000 33.300000 psbH gene psbH psbH 55883 56107 1 225 LSC 0.040974 29 71 30 156 no 0.714286 6 0.833333 0.047130 1.000000 69.700000 IGS_067 igs psbH|petB psbH-petB 56108 56226 0 119 LSC 0.000000 0 0 29 37 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 petB gene petB petB 56227 57530 1 1304 LSC 0.008056 30 5 148 31 no 1.000000 7 1.000000 0.007932 1.000000 53.000000 IGS_068 igs petB|petD petB-petD 57531 57732 0 202 LSC 0.008958 5 1 37 37 no 0.714286 6 0.833333 0.008976 1.000000 42.600000 petD gene petD petD 57733 58949 1 1217 LSC 0.035754 124 30 16 3 yes 1.000000 7 1.000000 0.035852 0.990961 75.200000 IGS_069 igs petD|rpoA petD-rpoA 58950 59149 0 200 LSC 0.008095 4 1 0 81 no 0.428571 5 0.600000 0.008107 1.000000 33.500000 rpoA gene rpoA rpoA 59150 60181 -1 1032 LSC 0.005644 14 4 66 138 no 1.000000 7 1.000000 0.005408 0.999031 53.400000 IGS_070 igs rpoA|rps11 rpoA-rps11 60182 60246 0 65 LSC 0.000000 0 0 76 73 no 0.000000 1 0.000000 0.000000 1.000000 24.200000 rps11 gene rps11 rps11 60247 60663 -1 417 LSC 0.001827 2 0 141 65 no 0.142857 3 0.333333 0.001827 1.000000 30.200000 IGS_071 igs rps11|rpl36 rps11-rpl36 60664 60785 0 122 LSC 0.002342 1 0 107 137 no 0.142857 2 0.500000 0.002342 1.000000 31.500000 rpl36 gene rpl36 rpl36 60786 60899 -1 114 LSC 0.000000 0 0 56 23 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 IGS_072 igs rpl36|infA rpl36-infA 60900 61025 0 126 LSC 0.033258 10 6 170 77 no 0.714286 6 0.833333 0.034845 0.952381 67.100000 infA gene infA infA 61026 61343 -1 318 LSC 0.014675 12 0 4 26 no 0.714286 6 0.833333 0.014675 1.000000 44.100000 IGS_073 igs infA|rps8 infA-rps8 61344 61384 0 41 LSC 0.013937 2 0 24 165 no 0.142857 2 0.500000 0.013937 1.000000 35.600000 rps8 gene rps8 rps8 61385 61783 -1 399 LSC 0.002626 2 0 13 51 no 0.142857 3 0.333333 0.002626 1.000000 26.300000 IGS_074 igs rps8|rpl16 rps8-rpl16 61784 62103 0 320 LSC 0.011375 10 89 181 111 no 1.000000 7 1.000000 0.011234 0.996875 60.200000 rpl16 gene rpl16 rpl16 62104 63554 -1 1451 LSC 0.008428 29 315 67 51 no 1.000000 7 1.000000 0.007369 0.993797 58.700000 IGS_075 igs rpl16|rps3 rpl16-rps3 63555 63711 0 157 LSC 0.005460 2 2 74 40 no 0.571429 5 0.800000 0.005493 1.000000 38.000000 rps3 gene rps3 rps3 63712 64368 -1 657 LSC 0.007248 13 0 81 8 no 0.714286 6 0.833333 0.007248 1.000000 44.700000 rpl22 gene rpl22 rpl22 64353 64892 -1 540 LSC 0.028307 50 0 7 22 no 1.000000 7 1.000000 0.028307 1.000000 67.300000 IGS_077 igs rpl22|rps19 rpl22-rps19 64893 64949 0 57 LSC 0.005013 1 0 3 144 no 0.142857 2 0.500000 0.005013 1.000000 26.100000 rps19 gene rps19 rps19 64950 65228 -1 279 LSC 0.002048 1 0 34 113 no 0.000000 2 0.000000 0.002048 1.000000 22.700000 IGS_078 igs rps19|rpl2 rps19-rpl2 65229 65312 0 84 LSC 0.000000 0 2 134 29 no 0.142857 3 0.333333 0.000000 0.976190 25.800000 rpl2 gene rpl2 rpl2 65313 66796 -1 1484 IRb 0.003209 14 0 218 107 no 1.000000 7 1.000000 0.003209 1.000000 54.400000 IGS_079 igs rpl2|rpl23 rpl2-rpl23 66797 66814 0 18 IRb 0.000000 0 0 1 89 no 0.000000 1 0.000000 NA 1.000000 18.800000 rpl23 gene rpl23 rpl23 66815 67096 -1 282 IRb 0.004390 3 0 19 64 no 0.142857 3 0.333333 0.004390 1.000000 26.200000 IGS_080 igs rpl23|trnI-CAU rpl23-trnI-CAU 67097 67261 0 165 IRb 0.004040 2 119 70 16 no 0.571429 5 0.800000 0.003303 1.000000 35.900000 trnI-CAU tRNA trnI-CAU trnI-CAU 67262 67335 -1 74 IRb 0.020270 3 74 33 0 no 0.142857 3 0.333333 0.020270 1.000000 35.600000 IGS_081 igs trnI-CAU|ycf2 trnI-CAU-ycf2 67336 69744 0 2409 IRb 0.078027 457 2033 43 43 yes 1.000000 7 1.000000 0.086328 0.995019 80.000000 ycf2 gene ycf2 ycf2 69745 70818 1 1074 IRb 0.012729 35 955 19 95 no 0.714286 6 0.833333 0.017734 1.000000 50.000000 IGS_082 igs ycf2|ndhB ycf2-ndhB 70819 71112 0 294 IRb 0.030191 27 268 11 52 no 0.571429 5 0.800000 0.038260 1.000000 55.700000 ndhB gene ndhB ndhB 71113 72645 -1 1533 IRb 0.007741 26 1510 71 300 no 0.714286 6 0.833333 0.007068 1.000000 51.100000 IGS_083 igs ndhB|rps7 ndhB-rps7 72646 72975 0 330 IRb 0.000000 0 330 92 300 no 0.142857 2 0.500000 0.000000 1.000000 30.700000 rps7 gene rps7 rps7 72976 73443 -1 468 IRb 0.000000 0 468 300 167 no 0.142857 2 0.500000 0.000000 1.000000 39.200000 IGS_084 igs rps7|trnV-GAC rps7-trnV-GAC 73444 75928 0 2485 IRb 0.076773 285 2485 300 0 yes 1.000000 7 1.000000 0.021668 0.803219 74.200000 trnV-GAC tRNA trnV-GAC trnV-GAC 75929 75934 1 6 IRb 0.400000 4 6 1 3 no 0.285714 4 0.500000 NA 1.000000 59.200000 IGS_085 igs trnV-GAC|rrn16 trnV-GAC-rrn16 75935 76109 0 175 IRb 0.077381 30 79 2 300 no 0.428571 5 0.600000 0.036484 0.960000 62.900000 rrn16 rRNA rrn16 rrn16 76110 77600 1 1491 IRb 0.031043 161 9 101 300 no 0.142857 3 0.333333 0.031230 1.000000 62.500000 IGS_086 igs rrn16|trnI-GAU rrn16-trnI-GAU 77601 77895 0 295 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 77896 77932 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 78883 78917 1 35 IRb 0.000000 0 0 300 21 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 IGS_089 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 78918 78981 0 64 IRb 0.004464 1 0 300 28 no 0.142857 2 0.500000 0.004464 1.000000 27.500000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 78982 79019 1 38 IRb 0.015038 2 0 42 18 no 0.142857 2 0.500000 0.015038 1.000000 36.100000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 79819 79853 1 35 IRb 0.000000 0 0 66 35 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_092 igs trnA-UGC|rrn23 trnA-UGC-rrn23 79854 79999 0 146 IRb 0.001957 1 0 101 297 no 0.142857 2 0.500000 0.001957 1.000000 30.700000 rrn23 rRNA rrn23 rrn23 80000 82809 1 2810 IRb 0.000474 4 0 110 268 no 0.571429 5 0.800000 0.000475 1.000000 41.600000 IGS_093 igs rrn23|rrn4.5 rrn23-rrn4.5 82810 82907 0 98 SSC 0.000000 0 0 300 170 no 0.000000 1 0.000000 0.000000 1.000000 31.500000 rrn4.5 rRNA rrn4.5 rrn4.5 82908 83010 1 103 SSC 0.000000 0 0 300 67 no 0.000000 1 0.000000 0.000000 1.000000 23.800000 IGS_094 igs rrn4.5|rrn5 rrn4.5-rrn5 83011 83234 0 224 SSC 0.036692 24 154 300 4 no 0.428571 4 0.750000 0.048369 1.000000 57.700000 rrn5 rRNA rrn5 rrn5 83235 83355 1 121 SSC 0.044077 16 121 9 54 no 0.285714 3 0.666667 0.062016 1.000000 57.600000 IGS_095 igs rrn5|trnR-ACG rrn5-trnR-ACG 83356 83608 0 253 SSC 0.019763 15 234 66 3 no 0.428571 4 0.750000 0.099907 1.000000 44.500000 trnR-ACG tRNA trnR-ACG trnR-ACG 83609 83682 1 74 SSC 0.088160 19 67 0 0 no 0.285714 3 0.666667 0.119048 1.000000 60.100000 IGS_096 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 83683 84280 0 598 SSC 0.050613 71 598 4 16 yes 1.000000 7 1.000000 0.144662 0.709030 75.400000 trnN-GUU tRNA trnN-GUU trnN-GUU 84281 84327 -1 47 SSC 0.014184 2 47 1 143 no 0.285714 3 0.666667 0.014184 1.000000 37.700000 IGS_097 igs trnN-GUU|ndhF trnN-GUU-ndhF 84328 85338 0 1011 SSC 0.009750 27 610 16 5 no 0.714286 6 0.833333 0.007120 1.000000 49.200000 ndhF gene ndhF ndhF 85339 87570 -1 2232 SSC 0.011171 56 2232 146 10 no 1.000000 7 1.000000 0.010089 0.996864 51.900000 IGS_098 igs ndhF|rpl32 ndhF-rpl32 87571 88455 0 885 SSC 0.024095 54 463 117 71 yes 1.000000 7 1.000000 0.024996 0.992090 71.000000 rpl32 gene rpl32 rpl32 88456 88617 1 162 SSC 0.005291 2 0 85 45 no 0.142857 3 0.333333 0.005291 1.000000 28.700000 IGS_099 igs rpl32|ccsA rpl32-ccsA 88618 89276 0 659 SSC 0.021913 39 155 46 55 no 1.000000 7 1.000000 0.021845 0.998483 69.600000 ccsA gene ccsA ccsA 89277 89387 1 111 SSC 0.012870 3 0 47 35 no 0.142857 3 0.333333 0.012870 1.000000 33.200000 IGS_100 igs ccsA|ndhD ccsA-ndhD 89388 89798 0 411 SSC 0.009918 11 81 31 21 no 0.714286 6 0.833333 0.009763 1.000000 49.000000 ndhD gene ndhD ndhD 89799 91007 -1 1209 SSC 0.008634 24 220 3 22 no 1.000000 7 1.000000 0.008738 1.000000 55.700000 IGS_101 igs ndhD|psaC ndhD-psaC 91008 91162 0 155 SSC 0.016098 6 84 17 129 no 0.714286 6 0.833333 0.015771 1.000000 47.300000 psaC gene psaC psaC 91163 91408 -1 246 SSC 0.002323 2 0 6 12 no 0.142857 2 0.500000 0.002323 1.000000 23.900000 IGS_102 igs psaC|ndhE psaC-ndhE 91409 91671 0 263 SSC 0.010502 6 1 68 19 no 0.714286 6 0.833333 0.010541 0.996198 41.500000 ndhE gene ndhE ndhE 91672 91977 -1 306 SSC 0.006411 5 118 40 43 no 0.714286 6 0.833333 0.006500 1.000000 44.700000 IGS_103 igs ndhE|ndhG ndhE-ndhG 91978 92191 0 214 SSC 0.006898 5 54 89 38 no 0.428571 4 0.750000 0.006753 1.000000 40.800000 ndhG gene ndhG ndhG 92192 92725 -1 534 SSC 0.018049 28 46 9 36 no 1.000000 7 1.000000 0.018621 1.000000 63.600000 IGS_104 igs ndhG|ndhI ndhG-ndhI 92726 93034 0 309 SSC 0.017975 18 47 24 42 no 1.000000 7 1.000000 0.017991 0.977346 59.500000 ndhI gene ndhI ndhI 93035 93460 -1 426 SSC 0.005433 6 146 27 4 no 0.285714 4 0.500000 0.006312 1.000000 36.000000 IGS_105 igs ndhI|ndhA ndhI-ndhA 93461 94242 0 782 SSC 0.012033 24 178 33 48 no 1.000000 7 1.000000 0.012428 1.000000 60.600000 ndhA gene ndhA ndhA 94243 94290 -1 48 SSC 0.000000 0 48 14 0 no 0.142857 2 0.500000 0.000000 1.000000 23.200000 IGS_106 igs ndhA|ndhH ndhA-ndhH 94291 95537 0 1247 SSC 0.010177 34 595 62 1 no 1.000000 7 1.000000 0.010463 0.999198 55.800000 ndhH gene ndhH ndhH 95538 95867 -1 330 SSC 0.001010 1 330 20 9 no 0.428571 4 0.750000 0.001016 1.000000 30.700000 IGS_107 igs ndhH|rps15 ndhH-rps15 95868 95913 0 46 SSC 0.007246 1 10 300 12 no 0.428571 4 0.750000 0.005520 1.000000 38.800000 rps15 gene rps15 rps15 95914 96192 -1 279 SSC 0.008875 7 0 36 9 no 0.571429 5 0.800000 0.008875 1.000000 37.300000 IGS_108 igs rps15|ycf1 rps15-ycf1 96193 97638 0 1446 SSC 0.014513 48 1194 92 47 no 1.000000 7 1.000000 0.012848 0.998617 58.900000 ycf1 gene ycf1 ycf1 97639 98412 -1 774 SSC 0.011782 22 403 93 49 no 0.714286 6 0.833333 0.008949 1.000000 53.700000 IGS_109 igs ycf1|trnN-GUU ycf1-trnN-GUU 98413 98754 0 342 SSC 0.025703 23 293 69 16 no 0.714286 6 0.833333 0.017183 1.000000 55.200000 trnN-GUU tRNA trnN-GUU trnN-GUU 98755 98801 1 47 SSC 0.014184 2 47 143 1 no 0.285714 3 0.666667 0.014184 1.000000 37.700000 IGS_110 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 98802 99399 0 598 SSC 0.050613 71 598 16 4 yes 1.000000 7 1.000000 0.144662 0.709030 75.400000 trnR-ACG tRNA trnR-ACG trnR-ACG 99400 99473 -1 74 SSC 0.088160 19 67 0 0 no 0.285714 3 0.666667 0.119048 1.000000 60.100000 IGS_111 igs trnR-ACG|rrn5 trnR-ACG-rrn5 99474 99726 0 253 SSC 0.024657 20 234 3 66 no 0.428571 4 0.750000 0.137407 1.000000 49.200000 rrn5 rRNA rrn5 rrn5 99727 99847 -1 121 SSC 0.044077 16 121 34 9 no 0.285714 3 0.666667 0.062016 1.000000 57.600000 IGS_112 igs rrn5|rrn4.5 rrn5-rrn4.5 99848 100071 0 224 SSC 0.036692 24 154 4 300 no 0.428571 4 0.750000 0.048369 1.000000 57.700000 rrn4.5 rRNA rrn4.5 rrn4.5 100072 100174 -1 103 SSC 0.000000 0 0 67 300 no 0.000000 1 0.000000 0.000000 1.000000 23.800000 IGS_113 igs rrn4.5|rrn23 rrn4.5-rrn23 100175 100272 0 98 SSC 0.000000 0 0 170 300 no 0.000000 1 0.000000 0.000000 1.000000 31.500000 rrn23 rRNA rrn23 rrn23 100273 103082 -1 2810 IRa 0.000474 4 0 268 110 no 0.571429 5 0.800000 0.000475 1.000000 41.600000 IGS_114 igs rrn23|trnA-UGC rrn23-trnA-UGC 103083 103228 0 146 IRa 0.001957 1 0 297 101 no 0.142857 2 0.500000 0.001957 1.000000 30.700000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 103229 103263 -1 35 IRa 0.000000 0 0 35 66 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 104063 104100 -1 38 IRa 0.015038 2 0 18 42 no 0.142857 2 0.500000 0.015038 1.000000 36.100000 IGS_117 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 104101 104164 0 64 IRa 0.004464 1 0 28 300 no 0.142857 2 0.500000 0.004464 1.000000 27.500000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 104165 104199 -1 35 IRa 0.000000 0 0 21 300 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 105150 105186 -1 37 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_120 igs trnI-GAU|rrn16 trnI-GAU-rrn16 105187 105481 0 295 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16 rRNA rrn16 rrn16 105482 106972 -1 1491 IRa 0.031043 161 9 300 101 no 0.142857 3 0.333333 0.031230 1.000000 62.500000 IGS_121 igs rrn16|trnV-GAC rrn16-trnV-GAC 106973 107147 0 175 IRa 0.077381 30 79 300 2 no 0.428571 5 0.600000 0.036484 0.960000 62.900000 trnV-GAC tRNA trnV-GAC trnV-GAC 107148 107175 -1 28 IRa 0.327381 15 28 3 1 no 0.428571 5 0.600000 0.333333 0.321429 53.400000 IGS_122 igs trnV-GAC|rps7 trnV-GAC-rps7 107176 109638 0 2463 IRa 0.083674 316 2463 0 300 yes 1.000000 7 1.000000 0.025706 0.837596 74.700000 rps7 gene rps7 rps7 109639 110106 1 468 IRa 0.000000 0 468 167 300 no 0.142857 2 0.500000 0.000000 1.000000 39.200000 IGS_123 igs rps7|ndhB rps7-ndhB 110107 110436 0 330 IRa 0.000000 0 330 300 92 no 0.142857 2 0.500000 0.000000 1.000000 30.700000 ndhB gene ndhB ndhB 110437 111969 1 1533 IRa 0.007741 26 1510 300 71 no 0.714286 6 0.833333 0.007068 1.000000 51.100000 IGS_124 igs ndhB|ycf2 ndhB-ycf2 111970 112263 0 294 IRa 0.030191 27 268 52 11 no 0.571429 5 0.800000 0.038260 1.000000 55.700000 ycf2 gene ycf2 ycf2 112264 113337 -1 1074 IRa 0.012729 35 957 95 19 no 0.714286 6 0.833333 0.017744 1.000000 50.000000 IGS_125 igs ycf2|trnI-CAU ycf2-trnI-CAU 113338 115746 0 2409 IRa 0.078175 458 2025 43 43 yes 1.000000 7 1.000000 0.086951 0.995019 80.000000 trnI-CAU tRNA trnI-CAU trnI-CAU 115747 115820 1 74 IRa 0.020270 3 74 0 33 no 0.142857 3 0.333333 0.020270 1.000000 35.600000 IGS_126 igs trnI-CAU|rpl23 trnI-CAU-rpl23 115821 115985 0 165 IRa 0.004040 2 119 16 70 no 0.571429 5 0.800000 0.003303 1.000000 35.900000 rpl23 gene rpl23 rpl23 115986 116267 1 282 IRa 0.004390 3 0 64 19 no 0.142857 3 0.333333 0.004390 1.000000 26.200000 IGS_127 igs rpl23|psbA rpl23-psbA 116268 145 0 1404 IRa 0.010328 30 94 89 147 no 1.000000 7 1.000000 0.007551 0.998575 63.600000