Hotspot

rpl22-rps19

LSC · 87726-87791 · 66 bp

Back to Hedlundia

Pi 0.0202

MarkerSeek score 58.90

Primer available yes

Label rpl22-rps19

Feature Metadata

label_name: rpl22-rps19
feature_type: igs
region: LSC
length_bp: 66
variable_sites: 3
pi: 0.0202
unique_haplotype_count: 3
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 58.90

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
rpl22-rps19_p1	CGCCCACGAATTTGATCAAT	TCTAAATTTCCGGGGGCATG	45.0	50.0	57.2	57.9	211-226 bp	1.0	77.8
rpl22-rps19_p2	CGCCCACGAATTTGATCAAT	CTCTAAATTTCCGGGGGCAT	45.0	50.0	57.2	57.6	212-227 bp	1.0	75.4
rpl22-rps19_p3	CGCCCACGAATTTGATCAATT	TCTAAATTTCCGGGGGCATG	42.9	50.0	57.9	57.9	211-226 bp	1.0	75.4
rpl22-rps19_p4	CGCCCACGAATTTGATCAAT	ACGGATCGTATGGTAGGACA	45.0	50.0	57.2	57.6	255-270 bp	1.0	75.3
rpl22-rps19_p5	CCGCCCACGAATTTGATCAA	TCTAAATTTCCGGGGGCATG	50.0	50.0	59.2	57.9	212-227 bp	1.0	75.0