feature_id	feature_type	parent_gene	label_name	start	end	strand	length_bp	region	pi	variable_sites	indel_sites	conserved_left_bp	conserved_right_bp	primer_available	species_resolution	unique_haplotype_count	species_specific_haplotype_ratio	interspecific_divergence	alignment_reliability	markerseek_score
atpA_part1	gene	atpA	atpA	1	1417	-1	1417	LSC	0.047753	99	0	4	84	no	1.000000	3	1.000000	0.047753	1.000000	74.300000
IGS_001	igs	atpA|atpD	atpA-atpD	1418	1462	0	45	LSC	0.000000	0	0	119	39	no	0.000000	1	0.000000	0.000000	1.000000	21.700000
atpD	gene	atpD	atpD	1463	2026	-1	564	LSC	0.049645	42	0	164	137	yes	1.000000	3	1.000000	0.049645	1.000000	84.900000
atpF	gene	atpF	atpF	2023	2562	-1	540	LSC	0.030864	25	0	7	16	no	1.000000	3	1.000000	0.030864	1.000000	62.700000
IGS_003	igs	atpF|atpG	atpF-atpG	2563	2624	0	62	LSC	0.021505	2	0	12	39	no	1.000000	3	1.000000	0.021505	1.000000	52.100000
atpG	gene	atpG	atpG	2625	3095	-1	471	LSC	0.028309	20	0	13	7	no	1.000000	3	1.000000	0.028309	1.000000	59.600000
IGS_004	igs	atpG|atpH	atpG-atpH	3096	3281	0	186	LSC	0.069892	19	1	26	9	no	1.000000	3	1.000000	0.070202	1.000000	73.800000
atpH	gene	atpH	atpH	3282	3530	-1	249	LSC	0.016064	6	0	9	6	no	1.000000	3	1.000000	0.016064	1.000000	48.200000
IGS_005	igs	atpH|atpI	atpH-atpI	3531	3599	0	69	LSC	0.038647	4	0	32	12	no	1.000000	3	1.000000	0.038647	1.000000	63.000000
atpI	gene	atpI	atpI	3600	4328	-1	729	LSC	0.020576	22	0	7	57	no	1.000000	3	1.000000	0.020576	1.000000	57.300000
IGS_006	igs	atpI|psaB	atpI-psaB	4329	4741	0	413	LSC	0.223039	130	9	83	0	no	1.000000	3	1.000000	0.222675	0.987893	77.100000
psaB	gene	psaB	psaB	4742	6943	-1	2202	LSC	0.054496	177	0	5	42	no	1.000000	3	1.000000	0.054496	1.000000	75.200000
IGS_007	igs	psaB|psaA	psaB-psaA	6944	7055	0	112	LSC	0.101190	17	0	59	3	no	1.000000	3	1.000000	0.101190	1.000000	72.700000
psaA	gene	psaA	psaA	7056	9314	-1	2259	LSC	0.045005	151	0	8	59	no	1.000000	3	1.000000	0.045005	1.000000	71.400000
IGS_008	igs	psaA|psaJ	psaA-psaJ	9315	9584	0	270	LSC	0.128109	46	29	62	3	no	1.000000	3	1.000000	0.121684	0.992593	77.700000
psaJ	gene	psaJ	psaJ	9585	9710	-1	126	LSC	0.079365	15	0	0	4	no	1.000000	3	1.000000	0.079365	1.000000	72.500000
IGS_009	igs	psaJ|psaF	psaJ-psaF	9711	9766	0	56	LSC	0.041667	3	3	9	12	no	1.000000	3	1.000000	0.030773	1.000000	69.300000
psaF	gene	psaF	psaF	9767	10324	-1	558	LSC	0.071685	58	0	42	34	yes	1.000000	3	1.000000	0.071685	1.000000	80.400000
IGS_010	igs	psaF|psbI	psaF-psbI	10325	10553	0	229	LSC	0.145560	45	32	14	6	no	1.000000	3	1.000000	0.135984	1.000000	77.700000
psbI	gene	psbI	psbI	10554	10670	-1	117	LSC	0.037037	6	0	1	47	no	1.000000	3	1.000000	0.037037	1.000000	60.700000
IGS_011	igs	psbI|ycf41	psbI-ycf41	10671	10786	0	116	LSC	0.054598	9	0	44	4	no	1.000000	3	1.000000	0.054598	1.000000	70.000000
ycf41	gene	ycf41	ycf41	10787	11095	-1	309	LSC	0.151025	67	1	5	4	no	1.000000	3	1.000000	0.151417	1.000000	73.400000
IGS_012	igs	ycf41|ycf39	ycf41-ycf39	11096	11101	0	6	LSC	0.277778	2	1	3	0	no	1.000000	3	1.000000	NA	1.000000	77.000000
ycf39	gene	ycf39	ycf39	11102	12061	-1	960	LSC	0.076389	107	0	0	0	no	1.000000	3	1.000000	0.076389	1.000000	78.800000
IGS_013	igs	ycf39|cbbX	ycf39-cbbX	12062	12084	0	23	LSC	0.202899	7	0	20	0	no	0.333333	2	0.500000	0.202899	1.000000	60.000000
cbbX	gene	cbbX	cbbX	12085	12957	-1	873	LSC	0.067965	87	0	0	4	no	1.000000	3	1.000000	0.067965	1.000000	78.700000
IGS_014	igs	cbbX|psaL	cbbX-psaL	12958	13073	0	116	LSC	0.160920	27	4	9	3	no	1.000000	3	1.000000	0.159380	1.000000	76.700000
psaL	gene	psaL	psaL	13074	13523	-1	450	LSC	0.054074	36	0	6	40	no	1.000000	3	1.000000	0.054074	1.000000	73.600000
IGS_015	igs	psaL|petL	psaL-petL	13524	13682	0	159	LSC	0.012579	3	0	59	17	no	1.000000	3	1.000000	0.012579	1.000000	46.800000
petL	gene	petL	petL	13683	13778	1	96	LSC	0.013889	2	0	9	1	no	0.333333	2	0.500000	0.013889	1.000000	33.900000
IGS_016	igs	petL|ycf4	petL-ycf4	13779	13798	0	20	LSC	0.133333	4	0	24	9	no	1.000000	3	1.000000	0.133333	1.000000	73.200000
ycf4	gene	ycf4	ycf4	13799	14344	1	546	LSC	0.060440	49	0	1	0	no	1.000000	3	1.000000	0.060440	1.000000	76.300000
IGS_017	igs	ycf4|OOD24_pgt001	ycf4-OOD24_pgt001	14345	14389	0	45	LSC	0.103704	7	0	14	152	no	1.000000	3	1.000000	0.103704	1.000000	73.600000
OOD24_pgt001	tRNA	OOD24_pgt001	OOD24_pgt001	14390	14460	1	71	LSC	0.000000	0	0	5	81	no	0.000000	1	0.000000	0.000000	1.000000	19.100000
IGS_018	igs	OOD24_pgt001|psbE	OOD24_pgt001-psbE	14461	14518	0	58	LSC	0.000000	0	0	76	23	no	0.000000	1	0.000000	0.000000	1.000000	20.500000
psbE	gene	psbE	psbE	14519	14773	1	255	LSC	0.039216	15	0	134	78	no	1.000000	3	1.000000	0.039216	1.000000	68.300000
IGS_019	igs	psbE|psbF	psbE-psbF	14774	14786	0	13	LSC	0.000000	0	0	36	65	no	0.000000	1	0.000000	NA	1.000000	21.400000
psbF	gene	psbF	psbF	14787	14918	1	132	LSC	0.015152	3	0	49	7	no	0.333333	2	0.500000	0.015152	1.000000	35.200000
IGS_020	igs	psbF|psbL	psbF-psbL	14919	14953	0	35	LSC	0.057143	3	0	33	74	no	0.333333	2	0.500000	0.057143	1.000000	60.700000
psbL	gene	psbL	psbL	14954	15070	1	117	LSC	0.011396	2	1	16	10	no	1.000000	3	1.000000	0.011445	1.000000	46.500000
IGS_021	igs	psbL|psbJ	psbL-psbJ	15071	15093	0	23	LSC	0.057971	2	0	20	50	no	1.000000	3	1.000000	0.057971	1.000000	72.400000
psbJ	gene	psbJ	psbJ	15094	15213	1	120	LSC	0.033333	6	0	6	0	no	1.000000	3	1.000000	0.033333	1.000000	58.700000
IGS_022	igs	psbJ|ycf90	psbJ-ycf90	15214	15277	0	64	LSC	0.270833	24	1	33	3	no	1.000000	3	1.000000	0.263558	1.000000	74.500000
ycf90	gene	ycf90	ycf90	15278	16555	-1	1278	LSC	0.093114	174	0	1	2	no	1.000000	3	1.000000	0.093114	1.000000	78.800000
IGS_023	igs	ycf90|OOD24_pgt002	ycf90-OOD24_pgt002	16556	16689	0	134	LSC	0.171642	33	4	5	76	no	1.000000	3	1.000000	0.170647	1.000000	76.300000
OOD24_pgt002	tRNA	OOD24_pgt002	OOD24_pgt002	16690	16762	-1	73	LSC	0.000000	0	0	0	3	no	0.000000	1	0.000000	0.000000	1.000000	18.800000
IGS_024	igs	OOD24_pgt002|OOD24_pgt003	OOD24_pgt002-OOD24_pgt003	16763	16788	0	26	LSC	0.141026	5	0	73	74	no	1.000000	3	1.000000	0.141026	1.000000	78.000000
OOD24_pgt003	tRNA	OOD24_pgt003	OOD24_pgt003	16789	16860	-1	72	LSC	0.000000	0	0	2	2	no	0.000000	1	0.000000	0.000000	1.000000	18.900000
IGS_025	igs	OOD24_pgt003|psbZ	OOD24_pgt003-psbZ	16861	16981	0	121	LSC	0.121212	21	9	74	9	no	1.000000	3	1.000000	0.129181	1.000000	78.700000
psbZ	gene	psbZ	psbZ	16982	17167	-1	186	LSC	0.019713	5	0	1	43	no	1.000000	3	1.000000	0.019713	1.000000	49.800000
IGS_026	igs	psbZ|ycf12	psbZ-ycf12	17168	17224	0	57	LSC	0.064327	5	0	103	6	no	1.000000	3	1.000000	0.064327	1.000000	71.400000
ycf12	gene	ycf12	ycf12	17225	17329	-1	105	LSC	0.012698	2	0	0	25	no	1.000000	3	1.000000	0.012698	1.000000	45.600000
IGS_027	igs	ycf12|OOD24_pgt004	ycf12-OOD24_pgt004	17330	17539	0	210	LSC	0.033333	10	0	44	67	no	1.000000	3	1.000000	0.033333	1.000000	61.800000
OOD24_pgt004	tRNA	OOD24_pgt004	OOD24_pgt004	17540	17611	1	72	LSC	0.009259	1	0	0	1	no	0.333333	2	0.500000	0.009259	1.000000	30.900000
IGS_028	igs	OOD24_pgt004|psbC	OOD24_pgt004-psbC	17612	17750	0	139	LSC	0.179856	36	1	4	30	no	1.000000	3	1.000000	0.180655	1.000000	73.600000
psbC	gene	psbC	psbC	17751	19196	-1	1446	LSC	0.032964	71	0	9	49	no	1.000000	3	1.000000	0.032964	1.000000	65.400000
psbD	gene	psbD	psbD	19114	20169	-1	1056	LSC	0.027146	42	0	108	3	no	1.000000	3	1.000000	0.027146	1.000000	61.200000
IGS_030	igs	psbD|psaI	psbD-psaI	20170	20388	0	219	LSC	0.090343	27	16	116	12	no	1.000000	3	1.000000	0.091110	0.977169	78.400000
psaI	gene	psaI	psaI	20389	20499	-1	111	LSC	0.012012	2	0	32	8	no	0.333333	2	0.500000	0.012012	1.000000	33.300000
IGS_031	igs	psaI|psbK	psaI-psbK	20500	20691	0	192	LSC	0.020833	6	0	86	12	no	1.000000	3	1.000000	0.020833	1.000000	51.700000
psbK	gene	psbK	psbK	20692	20826	1	135	LSC	0.029630	6	0	6	14	no	1.000000	3	1.000000	0.029630	1.000000	56.800000
IGS_032	igs	psbK|petG	psbK-petG	20827	20931	0	105	LSC	0.031746	5	0	15	74	no	1.000000	3	1.000000	0.031746	1.000000	58.900000
petG	gene	petG	petG	20932	21045	1	114	LSC	0.011696	2	0	14	7	no	1.000000	3	1.000000	0.011696	1.000000	45.500000
IGS_033	igs	petG|OOD24_pgt005	petG-OOD24_pgt005	21046	21211	0	166	LSC	0.204819	48	1	36	73	no	1.000000	3	1.000000	0.205769	1.000000	75.900000
OOD24_pgt005	tRNA	OOD24_pgt005	OOD24_pgt005	21212	21283	1	72	LSC	0.000000	0	0	0	1	no	0.000000	1	0.000000	0.000000	1.000000	18.800000
IGS_034	igs	OOD24_pgt005|orf125a	OOD24_pgt005-orf125a	21284	22409	0	1126	LSC	0.309091	81	1043	72	7	yes	1.000000	3	1.000000	0.374148	0.195382	65.700000
orf125a	gene	orf125a	orf125a	22410	22787	1	378	LSC	0.231922	102	284	2	0	no	1.000000	3	1.000000	0.347199	1.000000	74.100000
IGS_035	igs	orf125a|OOD24_pgt006	orf125a-OOD24_pgt006	22788	23072	0	285	LSC	0.410053	118	194	0	77	no	1.000000	3	1.000000	0.422806	0.884211	71.100000
OOD24_pgt006	tRNA	OOD24_pgt006	OOD24_pgt006	23073	23145	-1	73	LSC	0.000000	0	0	1	4	no	0.000000	1	0.000000	0.000000	1.000000	18.800000
IGS_036	igs	OOD24_pgt006|OOD24_pgt007	OOD24_pgt006-OOD24_pgt007	23146	23158	0	13	LSC	0.051282	1	0	74	77	no	0.333333	2	0.500000	NA	1.000000	62.700000
OOD24_pgt007	tRNA	OOD24_pgt007	OOD24_pgt007	23159	23230	-1	72	LSC	0.000000	0	0	8	5	no	0.000000	1	0.000000	0.000000	1.000000	19.100000
IGS_037	igs	OOD24_pgt007|OOD24_pgt008	OOD24_pgt007-OOD24_pgt008	23231	23366	0	136	LSC	0.144608	28	2	80	86	yes	1.000000	3	1.000000	0.146291	1.000000	80.200000
OOD24_pgt008	tRNA	OOD24_pgt008	OOD24_pgt008	23367	23448	1	82	LSC	0.000000	0	0	1	4	no	0.000000	1	0.000000	0.000000	1.000000	18.800000
IGS_038	igs	OOD24_pgt008|ycf33	OOD24_pgt008-ycf33	23449	23465	0	17	LSC	0.274510	7	0	83	6	no	1.000000	3	1.000000	NA	1.000000	73.000000
ycf33	gene	ycf33	ycf33	23466	23660	-1	195	LSC	0.129915	35	0	0	2	no	1.000000	3	1.000000	0.129915	1.000000	72.500000
IGS_039	igs	ycf33|OOD24_pgt009	ycf33-OOD24_pgt009	23661	23805	0	145	LSC	0.098851	21	1	11	88	no	1.000000	3	1.000000	0.099457	1.000000	74.100000
OOD24_pgt009	tRNA	OOD24_pgt009	OOD24_pgt009	23806	23878	1	73	LSC	0.000000	0	0	13	15	no	0.000000	1	0.000000	0.000000	1.000000	19.700000
IGS_040	igs	OOD24_pgt009|OOD24_pgt010	OOD24_pgt009-OOD24_pgt010	23879	23910	0	32	LSC	0.020833	1	5	86	54	no	0.333333	2	0.500000	0.024691	1.000000	47.000000
OOD24_pgt010	tRNA	OOD24_pgt010	OOD24_pgt010	23911	23997	1	87	LSC	0.007663	1	0	16	33	no	0.333333	2	0.500000	0.007663	1.000000	31.100000
IGS_041	igs	OOD24_pgt010|OOD24_pgt011	OOD24_pgt010-OOD24_pgt011	23998	24068	0	71	LSC	0.117371	12	2	32	74	no	1.000000	3	1.000000	0.120501	1.000000	78.100000
OOD24_pgt011	tRNA	OOD24_pgt011	OOD24_pgt011	24069	24142	1	74	LSC	0.000000	0	0	3	0	no	0.000000	1	0.000000	0.000000	1.000000	18.800000
IGS_042	igs	OOD24_pgt011|petM	OOD24_pgt011-petM	24143	24237	0	95	LSC	0.196491	27	0	77	9	no	1.000000	3	1.000000	0.196491	1.000000	73.200000
petM	gene	petM	petM	24238	24366	-1	129	LSC	0.041344	8	0	20	13	no	1.000000	3	1.000000	0.041344	1.000000	64.800000
IGS_043	igs	petM|petN	petM-petN	24367	24410	0	44	LSC	0.015152	1	0	50	30	no	0.333333	2	0.500000	0.015152	1.000000	36.900000
petN	gene	petN	petN	24411	24500	-1	90	LSC	0.007407	1	0	30	45	no	0.333333	2	0.500000	0.007407	1.000000	32.000000
IGS_044	igs	petN|psbH	petN-psbH	24501	24585	0	85	LSC	0.039216	5	0	59	30	no	1.000000	3	1.000000	0.039216	1.000000	64.800000
psbH	gene	psbH	psbH	24586	24789	-1	204	LSC	0.013072	4	0	5	129	no	1.000000	3	1.000000	0.013072	1.000000	46.200000
IGS_045	igs	psbH|psbN	psbH-psbN	24790	24873	0	84	LSC	0.000000	0	0	94	45	no	0.000000	1	0.000000	0.000000	1.000000	22.100000
psbN	gene	psbN	psbN	24874	25005	1	132	LSC	0.030303	6	1	178	13	no	1.000000	3	1.000000	0.030496	1.000000	58.700000
IGS_046	igs	psbN|psbT	psbN-psbT	25006	25028	0	23	LSC	0.028986	1	0	15	9	no	0.333333	2	0.500000	0.028986	1.000000	44.200000
psbT	gene	psbT	psbT	25029	25127	-1	99	LSC	0.020202	3	0	9	48	no	1.000000	3	1.000000	0.020202	1.000000	51.100000
IGS_047	igs	psbT|psbB	psbT-psbB	25128	25187	0	60	LSC	0.050000	4	2	42	3	no	1.000000	3	1.000000	0.039840	1.000000	72.400000
psbB	gene	psbB	psbB	25188	26717	-1	1530	LSC	0.037255	85	0	0	54	no	1.000000	3	1.000000	0.037255	1.000000	67.400000
IGS_048	igs	psbB|rps14	psbB-rps14	26718	26999	0	282	LSC	0.051008	21	20	62	11	no	1.000000	3	1.000000	0.051647	0.996454	75.600000
rps14	gene	rps14	rps14	27000	27302	1	303	LSC	0.071507	32	0	28	5	no	1.000000	3	1.000000	0.071507	1.000000	72.900000
IGS_049	igs	rps14|psaM	rps14-psaM	27303	27451	0	149	LSC	0.031320	7	0	18	23	no	1.000000	3	1.000000	0.031320	1.000000	58.800000
psaM	gene	psaM	psaM	27452	27544	1	93	LSC	0.035842	5	0	26	3	no	1.000000	3	1.000000	0.035842	1.000000	60.600000
IGS_050	igs	psaM|chlI	psaM-chlI	27545	27624	0	80	LSC	0.084388	10	2	48	8	no	1.000000	3	1.000000	0.085308	0.987500	75.700000
chlI	gene	chlI	chlI	27625	28686	1	1062	LSC	0.058067	90	3	1	4	no	1.000000	3	1.000000	0.058200	1.000000	77.200000
IGS_051	igs	chlI|secG	chlI-secG	28687	28722	0	36	LSC	0.064815	3	10	3	9	no	1.000000	3	1.000000	0.056980	1.000000	74.000000
secG	gene	secG	secG	28723	28935	1	213	LSC	0.101721	32	3	1	9	no	1.000000	3	1.000000	0.102906	1.000000	74.200000
IGS_052	igs	secG|petD	secG-petD	28936	29015	0	80	LSC	0.204167	23	16	8	9	no	1.000000	3	1.000000	0.212500	1.000000	77.300000
petD	gene	petD	petD	29016	29498	-1	483	LSC	0.053830	37	0	1	35	no	1.000000	3	1.000000	0.053830	1.000000	73.500000
IGS_053	igs	petD|petB	petD-petB	29499	29572	0	74	LSC	0.024876	2	12	74	42	no	1.000000	3	1.000000	0.026079	0.905405	57.600000
petB	gene	petB	petB	29573	30220	-1	648	LSC	0.048868	46	0	9	6	no	1.000000	3	1.000000	0.048868	1.000000	75.100000
IGS_054	igs	petB|OOD24_pgt012	petB-OOD24_pgt012	30221	30280	0	60	LSC	0.088889	8	0	26	33	no	1.000000	3	1.000000	0.088889	1.000000	74.400000
OOD24_pgt012	tRNA	OOD24_pgt012	OOD24_pgt012	30281	30368	-1	88	LSC	0.007576	1	0	6	31	no	0.333333	2	0.500000	0.007576	1.000000	30.300000
IGS_055	igs	OOD24_pgt012|psaD	OOD24_pgt012-psaD	30369	30403	0	35	LSC	0.047619	2	0	54	12	no	1.000000	3	1.000000	0.047619	1.000000	67.000000
psaD	gene	psaD	psaD	30404	30823	-1	420	LSC	0.072222	45	0	2	40	no	1.000000	3	1.000000	0.072222	1.000000	75.100000
IGS_056	igs	psaD|OOD24_pgt013	psaD-OOD24_pgt013	30824	30906	0	83	LSC	0.024096	3	0	32	75	no	1.000000	3	1.000000	0.024096	1.000000	55.300000
OOD24_pgt013	tRNA	OOD24_pgt013	OOD24_pgt013	30907	30980	-1	74	LSC	0.000000	0	0	12	1	no	0.000000	1	0.000000	0.000000	1.000000	18.800000
IGS_057	igs	OOD24_pgt013|rpl12	OOD24_pgt013-rpl12	30981	31134	0	154	LSC	0.136364	29	12	86	5	no	1.000000	3	1.000000	0.131059	1.000000	78.300000
rpl12	gene	rpl12	rpl12	31135	31518	-1	384	LSC	0.060764	35	0	2	7	no	1.000000	3	1.000000	0.060764	1.000000	73.300000
IGS_058	igs	rpl12|rpl1	rpl12-rpl1	31519	31580	0	62	LSC	0.102151	9	0	14	3	no	1.000000	3	1.000000	0.102151	1.000000	72.700000
rpl1	gene	rpl1	rpl1	31581	32273	-1	693	LSC	0.071669	73	0	0	6	no	1.000000	3	1.000000	0.071669	1.000000	78.800000
IGS_059	igs	rpl1|rpl11	rpl1-rpl11	32274	32314	0	41	LSC	0.048780	3	0	5	6	no	1.000000	3	1.000000	0.048780	1.000000	69.000000
rpl11	gene	rpl11	rpl11	32315	32740	-1	426	LSC	0.051643	31	0	31	22	no	1.000000	3	1.000000	0.051643	1.000000	73.400000
IGS_060	igs	rpl11|OOD24_pgt014	rpl11-OOD24_pgt014	32741	32887	0	147	LSC	0.045351	10	2	20	76	no	1.000000	3	1.000000	0.045914	1.000000	69.500000
OOD24_pgt014	tRNA	OOD24_pgt014	OOD24_pgt014	32888	32960	-1	73	LSC	0.000000	0	0	8	3	no	0.000000	1	0.000000	0.000000	1.000000	19.000000
IGS_061	igs	OOD24_pgt014|dnaB	OOD24_pgt014-dnaB	32961	33033	0	73	LSC	0.095890	9	0	81	3	no	1.000000	3	1.000000	0.095890	1.000000	72.700000
dnaB	gene	dnaB	dnaB	33034	34398	1	1365	LSC	0.097924	194	6	0	2	no	1.000000	3	1.000000	0.097763	1.000000	79.300000
IGS_062	igs	dnaB|OOD24_pgt015	dnaB-OOD24_pgt015	34399	34418	0	20	LSC	0.166667	5	0	0	75	no	1.000000	3	1.000000	0.166667	1.000000	72.500000
OOD24_pgt015	tRNA	OOD24_pgt015	OOD24_pgt015	34419	34491	-1	73	LSC	0.000000	0	0	3	2	no	0.000000	1	0.000000	0.000000	1.000000	18.900000
IGS_063	igs	OOD24_pgt015|ffs	OOD24_pgt015-ffs	34492	34597	0	106	LSC	0.163522	26	0	76	4	no	1.000000	3	1.000000	0.163522	1.000000	72.800000
ffs	gene	ffs	ffs	34598	34699	1	102	LSC	0.052288	8	0	0	1	no	1.000000	3	1.000000	0.052288	1.000000	69.800000
IGS_064	igs	ffs|psbX	ffs-psbX	34700	34879	0	180	LSC	0.074074	19	0	6	52	no	1.000000	3	1.000000	0.074074	1.000000	73.000000
psbX	gene	psbX	psbX	34880	35050	1	171	LSC	0.027290	7	0	21	3	no	1.000000	3	1.000000	0.027290	1.000000	55.100000
IGS_065	igs	psbX|ycf66	psbX-ycf66	35051	35187	0	137	LSC	0.092457	18	11	21	20	no	1.000000	3	1.000000	0.087186	1.000000	79.400000
ycf66	gene	ycf66	ycf66	35188	35490	1	303	LSC	0.035204	16	0	27	12	no	1.000000	3	1.000000	0.035204	1.000000	60.900000
IGS_066	igs	ycf66|psbV	ycf66-psbV	35491	35545	0	55	LSC	0.048485	4	1	10	30	no	1.000000	3	1.000000	0.049270	1.000000	71.200000
psbV	gene	psbV	psbV	35546	36037	1	492	LSC	0.042683	31	0	5	3	no	1.000000	3	1.000000	0.042683	1.000000	68.800000
IGS_067	igs	psbV|OOD24_pgt016	psbV-OOD24_pgt016	36038	36143	0	106	LSC	0.097484	15	0	9	46	no	1.000000	3	1.000000	0.097484	1.000000	73.200000
OOD24_pgt016	tRNA	OOD24_pgt016	OOD24_pgt016	36144	36216	1	73	LSC	0.009132	1	0	8	8	no	0.333333	2	0.500000	0.009132	1.000000	31.400000
IGS_068	igs	OOD24_pgt016|ssrA	OOD24_pgt016-ssrA	36217	36240	0	24	LSC	0.055556	2	0	26	26	no	1.000000	3	1.000000	0.055556	1.000000	72.400000
ssrA	gene	ssrA	ssrA	36241	36582	1	342	LSC	0.069201	35	1	1	3	no	1.000000	3	1.000000	0.069312	1.000000	73.800000
IGS_069	igs	ssrA|OOD24_pgt017	ssrA-OOD24_pgt017	36583	36587	0	5	LSC	0.133333	1	0	14	88	no	0.333333	2	0.500000	NA	1.000000	61.100000
OOD24_pgt017	tRNA	OOD24_pgt017	OOD24_pgt017	36588	36672	1	85	LSC	0.000000	0	0	1	3	no	0.000000	1	0.000000	0.000000	1.000000	18.800000
IGS_070	igs	OOD24_pgt017|rpl19	OOD24_pgt017-rpl19	36673	36761	0	89	LSC	0.029963	4	0	86	26	no	1.000000	3	1.000000	0.029963	1.000000	58.600000
rpl19	gene	rpl19	rpl19	36762	37124	1	363	LSC	0.051423	28	0	19	6	no	1.000000	3	1.000000	0.051423	1.000000	71.400000
IGS_071	igs	rpl19|petF	rpl19-petF	37125	37248	0	124	LSC	0.032258	6	0	0	38	no	1.000000	3	1.000000	0.032258	1.000000	58.100000
petF	gene	petF	petF	37249	37548	1	300	LSC	0.035556	16	0	36	62	no	1.000000	3	1.000000	0.035556	1.000000	62.900000
IGS_072	igs	petF|petA	petF-petA	37549	37619	0	71	LSC	0.018779	2	0	27	6	no	0.333333	2	0.500000	0.018779	1.000000	37.400000
petA	gene	petA	petA	37620	38564	-1	945	LSC	0.055379	77	0	4	44	no	1.000000	3	1.000000	0.055379	1.000000	76.700000
IGS_073	igs	petA|tatC	petA-tatC	38565	38609	0	45	LSC	0.014815	1	0	72	54	no	0.333333	2	0.500000	0.014815	1.000000	38.500000
tatC	gene	tatC	tatC	38610	39350	-1	741	LSC	0.035088	38	0	0	0	no	1.000000	3	1.000000	0.035088	1.000000	65.900000
IGS_074	igs	tatC|atpE	tatC-atpE	39351	39477	0	127	LSC	0.141333	26	3	3	27	no	1.000000	3	1.000000	0.136882	0.984252	75.100000
atpE	gene	atpE	atpE	39478	39879	-1	402	LSC	0.048093	29	0	26	3	no	1.000000	3	1.000000	0.048093	1.000000	70.500000
IGS_075	igs	atpE|atpB	atpE-atpB	39880	39891	0	12	LSC	0.055556	1	0	29	24	no	0.333333	2	0.500000	NA	1.000000	59.700000
atpB	gene	atpB	atpB	39892	41319	-1	1428	LSC	0.026844	57	0	8	72	no	1.000000	3	1.000000	0.026844	1.000000	61.400000
IGS_076	igs	atpB|ycf3	atpB-ycf3	41320	41479	0	160	LSC	0.045833	11	0	50	1	no	1.000000	3	1.000000	0.045833	1.000000	66.800000
ycf3	gene	ycf3	ycf3	41480	41986	-1	507	LSC	0.060487	44	0	1	29	no	1.000000	3	1.000000	0.060487	1.000000	75.200000
IGS_077	igs	ycf3|rps18	ycf3-rps18	41987	42067	0	81	LSC	0.024691	3	0	56	27	no	0.333333	2	0.500000	0.024691	1.000000	42.800000
rps18	gene	rps18	rps18	42068	42286	-1	219	LSC	0.039574	13	0	42	9	no	1.000000	3	1.000000	0.039574	1.000000	63.400000
IGS_078	igs	rps18|rpl33	rps18-rpl33	42287	42289	0	3	LSC	0.000000	0	0	21	6	no	0.000000	1	0.000000	NA	1.000000	19.200000
rpl33	gene	rpl33	rpl33	42290	42484	-1	195	LSC	0.076923	22	0	24	7	no	1.000000	3	1.000000	0.076923	1.000000	73.000000
IGS_079	igs	rpl33|rps20	rpl33-rps20	42485	42678	0	194	LSC	0.037801	11	0	10	23	no	1.000000	3	1.000000	0.037801	1.000000	62.300000
rps20	gene	rps20	rps20	42679	42960	1	282	LSC	0.073286	31	0	13	0	no	1.000000	3	1.000000	0.073286	1.000000	72.500000
IGS_080	igs	rps20|rpoB	rps20-rpoB	42961	43090	0	130	LSC	0.215385	40	7	3	5	no	1.000000	3	1.000000	0.220033	1.000000	78.400000
rpoB	gene	rpoB	rpoB	43091	47320	1	4230	LSC	0.078251	482	0	0	29	no	1.000000	3	1.000000	0.078251	1.000000	73.700000
IGS_081	igs	rpoB|rpoC1	rpoB-rpoC1	47321	47326	0	6	LSC	0.000000	0	0	33	23	no	0.000000	1	0.000000	NA	1.000000	20.500000
rpoC1	gene	rpoC1	rpoC1	47327	49423	1	2097	LSC	0.084088	258	0	39	29	no	1.000000	3	1.000000	0.084088	1.000000	79.700000
IGS_082	igs	rpoC1|rpoC2	rpoC1-rpoC2	49424	49445	0	22	LSC	0.000000	0	0	9	7	no	0.000000	1	0.000000	0.000000	1.000000	19.300000
rpoC2	gene	rpoC2	rpoC2	49446	53696	1	4251	LSC	0.098408	610	15	31	10	no	1.000000	3	1.000000	0.098046	1.000000	74.800000
IGS_083	igs	rpoC2|rps2	rpoC2-rps2	53697	53778	0	82	LSC	0.065041	8	0	7	38	no	1.000000	3	1.000000	0.065041	1.000000	72.700000
rps2	gene	rps2	rps2	53779	54468	1	690	LSC	0.069767	71	2	23	24	yes	1.000000	3	1.000000	0.069767	0.997101	80.700000
IGS_084	igs	rps2|rbcS	rps2-rbcS	54469	55496	0	1028	LSC	0.142857	33	880	6	12	no	1.000000	3	1.000000	0.140837	0.170233	60.300000
rbcS	gene	rbcS	rbcS	55497	55919	-1	423	LSC	0.017336	11	0	3	14	no	1.000000	3	1.000000	0.017336	1.000000	51.300000
IGS_085	igs	rbcS|rbcL	rbcS-rbcL	55920	55953	0	34	LSC	0.039216	2	0	59	4	no	1.000000	3	1.000000	0.039216	1.000000	62.800000
rbcL	gene	rbcL	rbcL	55954	57426	-1	1473	LSC	0.018104	39	0	5	52	no	1.000000	3	1.000000	0.018104	1.000000	55.600000
IGS_086	igs	rbcL|sufB	rbcL-sufB	57427	57714	0	288	LSC	0.108796	45	0	108	14	no	1.000000	3	1.000000	0.108796	1.000000	73.600000
sufB	gene	sufB	sufB	57715	59175	1	1461	LSC	0.091718	194	0	6	4	no	1.000000	3	1.000000	0.091718	1.000000	79.000000
sufC	gene	sufC	sufC	59175	59933	1	759	LSC	0.083882	92	0	19	3	no	1.000000	3	1.000000	0.083882	1.000000	79.000000
IGS_088	igs	sufC|ftsH	sufC-ftsH	59934	59990	0	57	LSC	0.292398	24	4	4	18	no	1.000000	3	1.000000	0.296305	1.000000	78.300000
ftsH	gene	ftsH	ftsH	59991	61862	-1	1872	LSC	0.077279	214	0	0	3	no	1.000000	3	1.000000	0.077279	1.000000	78.000000
IGS_089	igs	ftsH|psaE	ftsH-psaE	61863	62024	0	162	LSC	0.172840	39	5	10	8	no	1.000000	3	1.000000	0.172593	1.000000	76.600000
psaE	gene	psaE	psaE	62025	62216	1	192	LSC	0.071181	20	3	3	1	no	1.000000	3	1.000000	0.071980	1.000000	74.400000
IGS_090	igs	psaE|bas1	psaE-bas1	62217	62355	0	139	LSC	0.139089	25	42	9	6	no	1.000000	3	1.000000	0.137704	1.000000	76.100000
bas1	gene	bas1	bas1	62356	62967	1	612	LSC	0.065904	59	0	1	30	no	1.000000	3	1.000000	0.065904	1.000000	78.400000
IGS_091	igs	bas1|rpl35	bas1-rpl35	62968	62973	0	6	LSC	0.000000	0	0	23	24	no	0.000000	1	0.000000	NA	1.000000	20.500000
rpl35	gene	rpl35	rpl35	62974	63168	1	195	LSC	0.051282	15	0	29	42	no	1.000000	3	1.000000	0.051282	1.000000	71.800000
IGS_092	igs	rpl35|rpl20	rpl35-rpl20	63169	63180	0	12	LSC	0.000000	0	0	20	30	no	0.000000	1	0.000000	NA	1.000000	20.200000
rpl20	gene	rpl20	rpl20	63181	63522	1	342	LSC	0.048733	25	0	32	1	no	1.000000	3	1.000000	0.048733	1.000000	69.500000
IGS_093	igs	rpl20|ycf45	rpl20-ycf45	63523	63622	0	100	LSC	0.133333	20	0	0	11	no	1.000000	3	1.000000	0.133333	1.000000	72.500000
ycf45	gene	ycf45	ycf45	63623	64984	1	1362	LSC	0.097161	194	0	0	0	no	1.000000	3	1.000000	0.097161	1.000000	78.800000
IGS_094	igs	ycf45|OOD24_pgt018	ycf45-OOD24_pgt018	64985	65232	0	248	IRb	0.106183	39	1	6	74	no	1.000000	3	1.000000	0.103816	1.000000	73.400000
OOD24_pgt018	tRNA	OOD24_pgt018	OOD24_pgt018	65233	65306	1	74	IRb	0.000000	0	0	0	0	no	0.000000	1	0.000000	0.000000	1.000000	18.800000
IGS_095	igs	OOD24_pgt018|ycf89	OOD24_pgt018-ycf89	65307	65512	0	206	IRb	0.094309	28	14	74	3	no	1.000000	3	1.000000	0.096452	0.995146	78.200000
ycf89	gene	ycf89	ycf89	65513	66580	1	1068	IRb	0.073658	117	0	38	3	no	1.000000	3	1.000000	0.073658	1.000000	79.000000
IGS_096	igs	ycf89|rrs	ycf89-rrs	66581	66945	0	365	IRb	0.149772	79	18	0	117	no	1.000000	3	1.000000	0.154388	1.000000	79.500000
rrs	rRNA	rrs	rrs	66946	68442	1	1497	IRb	0.001336	3	0	4	30	no	1.000000	3	1.000000	0.001336	1.000000	44.900000
IGS_097	igs	rrs|OOD24_pgt019	rrs-OOD24_pgt019	68443	68482	0	40	IRb	0.041667	2	0	300	151	no	1.000000	3	1.000000	0.041667	1.000000	73.800000
OOD24_pgt019	tRNA	OOD24_pgt019	OOD24_pgt019	68483	68556	1	74	IRb	0.000000	0	0	8	77	no	0.000000	1	0.000000	0.000000	1.000000	19.400000
IGS_098	igs	OOD24_pgt019|OOD24_pgt020	OOD24_pgt019-OOD24_pgt020	68557	68558	0	2	IRb	0.000000	0	0	82	75	no	0.000000	1	0.000000	NA	1.000000	24.400000
OOD24_pgt020	tRNA	OOD24_pgt020	OOD24_pgt020	68559	68631	1	73	IRb	0.000000	0	0	84	2	no	0.000000	1	0.000000	0.000000	1.000000	18.900000
IGS_099	igs	OOD24_pgt020|rrl	OOD24_pgt020-rrl	68632	68678	0	47	IRb	0.092199	6	0	157	65	no	1.000000	3	1.000000	0.092199	1.000000	77.400000
rrl	rRNA	rrl	rrl	68679	71577	1	2899	IRb	0.003449	15	0	8	10	no	1.000000	3	1.000000	0.003449	1.000000	43.600000
IGS_100	igs	rrl|rrf	rrl-rrf	71578	71631	0	54	IRb	0.123457	10	0	7	23	no	1.000000	3	1.000000	0.123457	1.000000	73.000000
rrf	rRNA	rrf	rrf	71632	71758	1	127	IRb	0.005249	1	0	13	11	no	0.333333	2	0.500000	0.005249	1.000000	29.200000
IGS_101	igs	rrf|psbY	rrf-psbY	71759	72064	0	306	IRb	0.149888	62	32	103	75	yes	1.000000	3	1.000000	0.153622	0.973856	82.800000
psbY	gene	psbY	psbY	72065	72175	1	111	IRb	0.006006	1	0	72	8	no	0.333333	2	0.500000	0.006006	1.000000	29.400000
IGS_102	igs	psbY|psaC	psbY-psaC	72176	72286	0	111	SSC	0.078788	13	2	35	29	no	1.000000	3	1.000000	0.079316	0.990991	76.500000
psaC	gene	psaC	psaC	72287	72532	1	246	SSC	0.058266	21	0	4	7	no	1.000000	3	1.000000	0.058266	1.000000	71.000000
IGS_103	igs	psaC|ccsA	psaC-ccsA	72533	72586	0	54	SSC	0.013072	1	5	12	6	no	1.000000	3	1.000000	0.013605	0.944444	50.200000
ccsA	gene	ccsA	ccsA	72587	73525	-1	939	SSC	0.070998	97	0	46	3	no	1.000000	3	1.000000	0.070998	1.000000	79.000000
IGS_104	igs	ccsA|rps6	ccsA-rps6	73526	73724	0	199	SSC	0.077052	22	6	66	13	no	1.000000	3	1.000000	0.071682	1.000000	76.900000
rps6	gene	rps6	rps6	73725	74021	1	297	SSC	0.040404	18	0	9	5	no	1.000000	3	1.000000	0.040404	1.000000	63.600000
IGS_105	igs	rps6|OOD24_pgt021	rps6-OOD24_pgt021	74022	74101	0	80	SSC	0.066667	8	0	6	76	no	1.000000	3	1.000000	0.066667	1.000000	73.000000
OOD24_pgt021	tRNA	OOD24_pgt021	OOD24_pgt021	74102	74173	1	72	SSC	0.000000	0	1	1	4	no	0.333333	2	0.500000	0.000000	0.986111	26.300000
IGS_106	igs	OOD24_pgt021|thiG	OOD24_pgt021-thiG	74174	74195	0	22	SSC	0.136364	4	0	73	3	no	1.000000	3	1.000000	0.136364	1.000000	72.700000
thiG	gene	thiG	thiG	74196	75002	1	807	SSC	0.088806	103	0	0	1	no	1.000000	3	1.000000	0.088806	1.000000	78.800000
IGS_107	igs	thiG|ycf35	thiG-ycf35	75003	76139	0	1137	SSC	0.425121	554	621	3	8	yes	1.000000	3	1.000000	0.399892	0.970976	78.900000
ycf35	gene	ycf35	ycf35	76140	76532	-1	393	SSC	0.058524	34	0	3	4	no	1.000000	3	1.000000	0.058524	1.000000	73.000000
IGS_108	igs	ycf35|rps16	ycf35-rps16	76533	76806	0	274	SSC	0.221411	82	80	8	9	no	1.000000	3	1.000000	0.242105	1.000000	76.300000
rps16	gene	rps16	rps16	76807	77043	-1	237	SSC	0.077356	27	0	3	7	no	1.000000	3	1.000000	0.077356	1.000000	72.700000
IGS_109	igs	rps16|rps4	rps16-rps4	77044	77084	0	41	SSC	0.032520	2	0	9	6	no	1.000000	3	1.000000	0.032520	1.000000	58.700000
rps4	gene	rps4	rps4	77085	77699	-1	615	SSC	0.069377	63	0	24	6	no	1.000000	3	1.000000	0.069377	1.000000	79.200000
IGS_110	igs	rps4|OOD24_pgt022	rps4-OOD24_pgt022	77700	77762	0	63	SSC	0.058201	5	1	14	5	no	1.000000	3	1.000000	0.048131	1.000000	72.100000
OOD24_pgt022	tRNA	OOD24_pgt022	OOD24_pgt022	77763	77835	-1	73	SSC	0.018265	2	0	27	2	no	1.000000	3	1.000000	0.018265	1.000000	49.300000
thiS	gene	thiS	thiS	77790	78128	1	339	SSC	0.129794	62	0	21	7	no	1.000000	3	1.000000	0.129794	1.000000	73.800000
IGS_112	igs	thiS|syfB	thiS-syfB	78129	78169	0	41	SSC	0.211382	13	0	9	0	no	1.000000	3	1.000000	0.211382	1.000000	72.500000
syfB	gene	syfB	syfB	78170	80296	-1	2127	SSC	0.126156	390	0	1	19	no	1.000000	3	1.000000	0.126156	1.000000	77.500000
IGS_113	igs	syfB|psb28	syfB-psb28	80297	80326	0	30	SSC	0.022222	1	9	12	6	no	0.333333	2	0.500000	0.031746	1.000000	42.700000
psb28	gene	psb28	psb28	80327	80674	-1	348	SSC	0.090038	46	0	10	6	no	1.000000	3	1.000000	0.090038	1.000000	74.000000
IGS_114	igs	psb28|OOD24_pgt023	psb28-OOD24_pgt023	80675	80785	0	111	SSC	0.120120	20	2	4	73	no	1.000000	3	1.000000	0.122159	1.000000	74.900000
OOD24_pgt023	tRNA	OOD24_pgt023	OOD24_pgt023	80786	80857	-1	72	SSC	0.000000	0	0	2	1	no	0.000000	1	0.000000	0.000000	1.000000	18.800000
IGS_115	igs	OOD24_pgt023|OOD24_pgt024	OOD24_pgt023-OOD24_pgt024	80858	80906	0	49	SSC	0.136054	9	0	74	78	no	1.000000	3	1.000000	0.136054	1.000000	78.000000
OOD24_pgt024	tRNA	OOD24_pgt024	OOD24_pgt024	80907	80980	-1	74	SSC	0.000000	0	0	17	4	no	0.000000	1	0.000000	0.000000	1.000000	19.100000
IGS_116	igs	OOD24_pgt024|groEL	OOD24_pgt024-groEL	80981	81151	0	171	SSC	0.081871	21	0	91	14	no	1.000000	3	1.000000	0.081871	1.000000	73.600000
groEL	gene	groEL	groEL	81152	82753	1	1602	SSC	0.079276	184	0	12	12	no	1.000000	3	1.000000	0.079276	1.000000	79.400000
IGS_117	igs	groEL|dnaK	groEL-dnaK	82754	82781	0	28	SSC	0.130952	5	0	16	32	no	1.000000	3	1.000000	0.130952	1.000000	73.700000
dnaK	gene	dnaK	dnaK	82782	84617	-1	1836	SSC	0.068809	185	0	0	21	no	1.000000	3	1.000000	0.068809	1.000000	78.000000
IGS_118	igs	dnaK|rpl3	dnaK-rpl3	84618	84849	0	232	SSC	0.113506	38	11	38	86	yes	1.000000	3	1.000000	0.117797	1.000000	80.800000
rpl3	gene	rpl3	rpl3	84850	85488	1	639	SSC	0.056338	52	0	37	49	no	1.000000	3	1.000000	0.056338	1.000000	79.200000
IGS_119	igs	rpl3|rpl4	rpl3-rpl4	85489	85528	0	40	SSC	0.000000	0	0	23	9	no	0.000000	1	0.000000	0.000000	1.000000	19.400000
rpl4	gene	rpl4	rpl4	85529	86176	1	648	SSC	0.072016	69	0	63	0	no	1.000000	3	1.000000	0.072016	1.000000	78.800000
rpl23	gene	rpl23	rpl23	86166	86477	1	312	SSC	0.037393	17	0	13	78	no	1.000000	3	1.000000	0.037393	1.000000	62.400000
IGS_121	igs	rpl23|rpl2	rpl23-rpl2	86478	86505	0	28	SSC	0.000000	0	1	36	50	no	0.333333	2	0.500000	0.000000	1.000000	31.800000
rpl2	gene	rpl2	rpl2	86506	87333	1	828	SSC	0.071256	88	0	64	14	no	1.000000	3	1.000000	0.071256	1.000000	79.800000
IGS_122	igs	rpl2|rps19	rpl2-rps19	87334	87375	0	42	SSC	0.079365	5	6	12	23	no	0.333333	2	0.500000	0.092593	1.000000	65.700000
rps19	gene	rps19	rps19	87376	87654	1	279	SSC	0.040621	17	0	0	33	no	1.000000	3	1.000000	0.040621	1.000000	63.400000
IGS_123	igs	rps19|ycf88	rps19-ycf88	87655	87667	0	13	SSC	0.000000	0	0	33	20	no	0.000000	1	0.000000	NA	1.000000	20.200000
ycf88	gene	ycf88	ycf88	87668	88156	1	489	SSC	0.034083	25	0	46	3	no	1.000000	3	1.000000	0.034083	1.000000	63.400000
IGS_124	igs	ycf88|rpl22	ycf88-rpl22	88157	88298	0	142	SSC	0.082160	17	1	51	29	no	1.000000	3	1.000000	0.082626	1.000000	75.500000
rpl22	gene	rpl22	rpl22	88299	88646	1	348	SSC	0.051724	26	0	12	8	no	1.000000	3	1.000000	0.051724	1.000000	70.900000
IGS_125	igs	rpl22|rps3	rpl22-rps3	88647	88674	0	28	SSC	0.023810	1	0	7	5	no	0.333333	2	0.500000	0.023810	1.000000	40.600000
rps3	gene	rps3	rps3	88675	89319	1	645	SSC	0.060465	57	0	19	77	no	1.000000	3	1.000000	0.060465	1.000000	78.700000
IGS_126	igs	rps3|rpl16	rps3-rpl16	89320	89370	0	51	SSC	0.000000	0	1	8	26	no	0.333333	2	0.500000	0.000000	1.000000	27.800000
rpl16	gene	rpl16	rpl16	89371	89787	1	417	SSC	0.041567	25	0	59	1	no	1.000000	3	1.000000	0.041567	1.000000	66.200000
IGS_127	igs	rpl16|rpl29	rpl16-rpl29	89788	89791	0	4	SSC	0.166667	1	0	39	30	no	0.333333	2	0.500000	NA	1.000000	62.300000
rpl29	gene	rpl29	rpl29	89792	90031	1	240	SSC	0.033333	12	0	2	66	no	1.000000	3	1.000000	0.033333	1.000000	58.900000
IGS_128	igs	rpl29|rps17	rpl29-rps17	90032	90083	0	52	SSC	0.000000	0	0	7	14	no	0.000000	1	0.000000	0.000000	1.000000	19.300000
rps17	gene	rps17	rps17	90084	90338	1	255	SSC	0.054902	21	0	59	7	no	1.000000	3	1.000000	0.054902	1.000000	70.800000
IGS_129	igs	rps17|rpl14	rps17-rpl14	90339	90349	0	11	SSC	0.060606	1	0	38	17	no	0.333333	2	0.500000	NA	1.000000	60.100000
rpl14	gene	rpl14	rpl14	90350	90715	1	366	SSC	0.047359	26	0	3	11	no	1.000000	3	1.000000	0.047359	1.000000	69.300000
rpl24	gene	rpl24	rpl24	90716	90964	1	249	SSC	0.038822	14	0	5	46	no	1.000000	3	1.000000	0.038822	1.000000	62.400000
IGS_131	igs	rpl24|rpl5	rpl24-rpl5	90965	90965	0	1	SSC	0.000000	0	0	60	45	no	0.000000	1	0.000000	NA	1.000000	22.100000
rpl5	gene	rpl5	rpl5	90966	91682	1	717	SSC	0.056718	60	1	61	2	no	1.000000	3	1.000000	0.056781	1.000000	77.000000
IGS_132	igs	rpl5|rps8	rpl5-rps8	91683	91695	0	13	SSC	0.333333	6	3	18	16	no	1.000000	3	1.000000	NA	1.000000	77.500000
rps8	gene	rps8	rps8	91696	92115	1	420	SSC	0.081746	51	0	0	13	no	1.000000	3	1.000000	0.081746	1.000000	75.000000
IGS_133	igs	rps8|rpl6	rps8-rpl6	92116	92133	0	18	SSC	0.037037	1	0	10	8	no	0.333333	2	0.500000	NA	1.000000	49.200000
rpl6	gene	rpl6	rpl6	92134	92670	1	537	SSC	0.075729	60	0	4	9	no	1.000000	3	1.000000	0.075729	1.000000	77.700000
rpl18	gene	rpl18	rpl18	92564	93130	1	567	SSC	0.073486	62	2	3	6	no	1.000000	3	1.000000	0.073701	1.000000	78.700000
IGS_135	igs	rpl18|rps5	rpl18-rps5	93131	93170	0	40	SSC	0.033333	2	0	12	26	no	0.333333	2	0.500000	0.033333	1.000000	47.200000
rps5	gene	rps5	rps5	93171	93707	1	537	SSC	0.081316	63	0	26	4	no	1.000000	3	1.000000	0.081316	1.000000	77.700000
IGS_136	igs	rps5|secY	rps5-secY	93708	93734	0	27	SSC	0.074074	3	0	12	2	no	0.333333	2	0.500000	0.074074	1.000000	60.100000
secY	gene	secY	secY	93735	94994	1	1260	SSC	0.070635	128	0	13	5	no	1.000000	3	1.000000	0.070635	1.000000	79.100000
IGS_137	igs	secY|rpl36	secY-rpl36	94995	95021	0	27	SSC	0.074074	3	0	3	74	no	0.333333	2	0.500000	0.074074	1.000000	60.200000
rpl36	gene	rpl36	rpl36	95022	95135	1	114	SSC	0.023392	4	0	13	68	no	1.000000	3	1.000000	0.023392	1.000000	53.400000
IGS_138	igs	rpl36|rps13	rpl36-rps13	95136	95156	0	21	SSC	0.000000	0	0	3	47	no	0.000000	1	0.000000	0.000000	1.000000	19.000000
rps13	gene	rps13	rps13	95157	95528	1	372	SSC	0.056452	30	0	24	17	no	1.000000	3	1.000000	0.056452	1.000000	72.900000
IGS_139	igs	rps13|rps11	rps13-rps11	95529	95549	0	21	SSC	0.031746	1	0	9	29	no	0.333333	2	0.500000	0.031746	1.000000	45.900000
rps11	gene	rps11	rps11	95550	95942	1	393	SSC	0.053435	29	0	3	13	no	1.000000	3	1.000000	0.053435	1.000000	71.400000
IGS_140	igs	rps11|rpoA	rps11-rpoA	95943	95968	0	26	SSC	0.025641	1	0	45	5	no	0.333333	2	0.500000	0.025641	1.000000	41.700000
rpoA	gene	rpoA	rpoA	95969	96904	1	936	SSC	0.054131	74	0	12	1	no	1.000000	3	1.000000	0.054131	1.000000	76.200000
IGS_141	igs	rpoA|rpl13	rpoA-rpl13	96905	96969	0	65	SSC	0.041026	4	0	4	29	no	1.000000	3	1.000000	0.041026	1.000000	64.000000
rpl13	gene	rpl13	rpl13	96970	97428	1	459	SSC	0.046478	31	0	13	3	no	1.000000	3	1.000000	0.046478	1.000000	70.400000
IGS_142	igs	rpl13|rps9	rpl13-rps9	97429	97490	0	62	SSC	0.091398	8	0	0	26	no	1.000000	3	1.000000	0.091398	1.000000	72.500000
rps9	gene	rps9	rps9	97491	97907	1	417	SSC	0.052758	33	0	11	30	no	1.000000	3	1.000000	0.052758	1.000000	73.200000
IGS_143	igs	rps9|rpl31	rps9-rpl31	97908	97920	0	13	SSC	0.000000	0	0	36	17	no	0.000000	1	0.000000	NA	1.000000	20.000000
rpl31	gene	rpl31	rpl31	97921	98145	1	225	SSC	0.048889	16	0	49	25	no	1.000000	3	1.000000	0.048889	1.000000	70.300000
IGS_144	igs	rpl31|rps12	rpl31-rps12	98146	98162	0	17	SSC	0.000000	0	0	16	8	no	0.000000	1	0.000000	NA	1.000000	19.400000
rps12	gene	rps12	rps12	98163	98543	1	381	SSC	0.071741	39	0	33	12	no	1.000000	3	1.000000	0.071741	1.000000	75.100000
IGS_145	igs	rps12|rps7	rps12-rps7	98544	98569	0	26	SSC	0.051282	2	0	36	35	no	1.000000	3	1.000000	0.051282	1.000000	72.200000
rps7	gene	rps7	rps7	98570	99040	1	471	SSC	0.055202	38	0	11	3	no	1.000000	3	1.000000	0.055202	1.000000	73.900000
IGS_146	igs	rps7|tufA	rps7-tufA	99041	99116	0	76	SSC	0.078947	9	0	12	26	no	1.000000	3	1.000000	0.078947	1.000000	73.400000
tufA	gene	tufA	tufA	99117	100346	1	1230	SSC	0.057453	104	0	6	20	no	1.000000	3	1.000000	0.057453	1.000000	77.300000
IGS_147	igs	tufA|rps10	tufA-rps10	100347	100358	0	12	SSC	0.000000	0	0	24	8	no	0.000000	1	0.000000	NA	1.000000	19.400000
rps10	gene	rps10	rps10	100359	100682	1	324	SSC	0.048354	23	0	36	26	no	1.000000	3	1.000000	0.048354	1.000000	70.600000
IGS_148	igs	rps10|OOD24_pgt025	rps10-OOD24_pgt025	100683	100924	0	242	SSC	0.307922	88	67	51	87	no	1.000000	3	1.000000	0.268563	0.921488	77.900000
OOD24_pgt025	tRNA	OOD24_pgt025	OOD24_pgt025	100925	101010	-1	86	SSC	0.000000	0	0	0	1	no	0.000000	1	0.000000	0.000000	1.000000	18.800000
IGS_149	igs	OOD24_pgt025|OOD24_pgt026	OOD24_pgt025-OOD24_pgt026	101011	101107	0	97	SSC	0.236111	33	4	86	76	yes	1.000000	3	1.000000	0.242272	0.989691	82.700000
OOD24_pgt026	tRNA	OOD24_pgt026	OOD24_pgt026	101108	101178	-1	71	SSC	0.000000	0	0	3	5	no	0.000000	1	0.000000	0.000000	1.000000	19.000000
IGS_150	igs	OOD24_pgt026|clpC	OOD24_pgt026-clpC	101179	101314	0	136	SSC	0.129902	24	30	74	71	yes	1.000000	3	1.000000	0.138087	1.000000	81.800000
clpC	gene	clpC	clpC	101315	104080	1	2766	SSC	0.069294	281	0	15	0	no	1.000000	3	1.000000	0.069294	1.000000	76.100000
IGS_151	igs	clpC|psbA	clpC-psbA	104081	105189	0	1109	SSC	0.450887	560	540	9	87	yes	1.000000	3	1.000000	0.416448	0.948602	79.400000
psbA	gene	psbA	psbA	105190	106272	-1	1083	SSC	0.009849	16	0	9	6	no	1.000000	3	1.000000	0.009849	1.000000	50.500000
IGS_152	igs	psbA|ccs1	psbA-ccs1	106273	106358	0	86	SSC	0.054264	7	0	98	11	no	1.000000	3	1.000000	0.054264	1.000000	71.000000
ccs1	gene	ccs1	ccs1	106359	107624	-1	1266	SSC	0.076883	143	0	18	1	no	1.000000	3	1.000000	0.076883	1.000000	78.800000
IGS_153	igs	ccs1|ycf46	ccs1-ycf46	107625	107636	0	12	SSC	0.111111	2	0	23	12	no	1.000000	3	1.000000	NA	1.000000	73.400000
ycf46	gene	ycf46	ycf46	107637	109127	-1	1491	SSC	0.080259	172	0	8	3	no	1.000000	3	1.000000	0.080259	1.000000	79.000000
IGS_154	igs	ycf46|rpl34	ycf46-rpl34	109128	109239	0	112	SSC	0.041667	7	0	30	6	no	1.000000	3	1.000000	0.041667	1.000000	64.500000
rpl34	gene	rpl34	rpl34	109240	109386	-1	147	SSC	0.088435	17	0	2	4	no	1.000000	3	1.000000	0.088435	1.000000	72.600000
IGS_155	igs	rpl34|secA	rpl34-secA	109387	109411	0	25	SSC	0.026667	1	0	8	6	no	0.333333	2	0.500000	0.026667	1.000000	42.500000
secA	gene	secA	secA	109412	112054	-1	2643	SSC	0.071131	277	0	20	0	no	1.000000	3	1.000000	0.071131	1.000000	76.400000
IGS_156	igs	secA|rpl27	secA-rpl27	112055	112075	0	21	SSC	0.126984	4	0	23	15	no	1.000000	3	1.000000	0.126984	1.000000	73.600000
rpl27	gene	rpl27	rpl27	112076	112327	-1	252	SSC	0.063492	24	0	1	14	no	1.000000	3	1.000000	0.063492	1.000000	72.000000
IGS_157	igs	rpl27|rpl21	rpl27-rpl21	112328	112355	0	28	SSC	0.107143	4	6	11	11	no	1.000000	3	1.000000	0.099567	1.000000	77.300000
rpl21	gene	rpl21	rpl21	112356	112673	-1	318	SSC	0.066038	31	0	1	3	no	1.000000	3	1.000000	0.066038	1.000000	72.600000
IGS_158	igs	rpl21|rbcR	rpl21-rbcR	112674	112752	0	79	SSC	0.016878	2	0	20	24	no	0.333333	2	0.500000	0.016878	1.000000	37.300000
rbcR	gene	rbcR	rbcR	112753	113676	-1	924	SSC	0.080087	107	0	34	31	yes	1.000000	3	1.000000	0.080087	1.000000	81.100000
IGS_159	igs	rbcR|OOD24_pgt027	rbcR-OOD24_pgt027	113677	113721	0	45	SSC	0.044444	3	16	5	93	no	1.000000	3	1.000000	0.064879	1.000000	68.800000
OOD24_pgt027	tRNA	OOD24_pgt027	OOD24_pgt027	113722	113803	-1	82	SSC	0.000000	0	0	7	11	no	0.000000	1	0.000000	0.000000	1.000000	19.300000
IGS_160	igs	OOD24_pgt027|rpl32	OOD24_pgt027-rpl32	113804	113870	0	67	SSC	0.069652	6	12	89	12	no	1.000000	3	1.000000	0.056264	1.000000	76.500000
rpl32	gene	rpl32	rpl32	113871	114038	-1	168	SSC	0.027778	7	0	33	17	no	1.000000	3	1.000000	0.027778	1.000000	56.500000
IGS_161	igs	rpl32|psbY	rpl32-psbY	114039	114145	0	107	SSC	0.068536	11	3	20	35	no	1.000000	3	1.000000	0.069794	1.000000	77.200000
psbY	gene	psbY	psbY	114146	114256	-1	111	IRa	0.006006	1	0	8	72	no	0.333333	2	0.500000	0.006006	1.000000	29.400000
IGS_162	igs	psbY|rrf	psbY-rrf	114257	114562	0	306	IRa	0.153244	63	34	75	103	yes	1.000000	3	1.000000	0.150889	0.973856	82.700000
rrf	rRNA	rrf	rrf	114563	114689	-1	127	IRa	0.005249	1	0	11	13	no	0.333333	2	0.500000	0.005249	1.000000	29.200000
IGS_163	igs	rrf|rrl	rrf-rrl	114690	114743	0	54	IRa	0.123457	10	0	23	7	no	1.000000	3	1.000000	0.123457	1.000000	73.000000
rrl	rRNA	rrl	rrl	114744	117642	-1	2899	IRa	0.003449	15	0	10	8	no	1.000000	3	1.000000	0.003449	1.000000	43.600000
IGS_164	igs	rrl|OOD24_pgt028	rrl-OOD24_pgt028	117643	117689	0	47	IRa	0.092199	6	0	65	157	no	1.000000	3	1.000000	0.092199	1.000000	77.400000
OOD24_pgt028	tRNA	OOD24_pgt028	OOD24_pgt028	117690	117762	-1	73	IRa	0.000000	0	0	2	84	no	0.000000	1	0.000000	0.000000	1.000000	18.900000
IGS_165	igs	OOD24_pgt028|OOD24_pgt029	OOD24_pgt028-OOD24_pgt029	117763	117764	0	2	IRa	0.000000	0	0	75	82	no	0.000000	1	0.000000	NA	1.000000	24.400000
OOD24_pgt029	tRNA	OOD24_pgt029	OOD24_pgt029	117765	117838	-1	74	IRa	0.000000	0	0	77	8	no	0.000000	1	0.000000	0.000000	1.000000	19.400000
IGS_166	igs	OOD24_pgt029|rrs	OOD24_pgt029-rrs	117839	117878	0	40	IRa	0.041667	2	0	151	300	no	1.000000	3	1.000000	0.041667	1.000000	73.800000
rrs	rRNA	rrs	rrs	117879	119375	-1	1497	IRa	0.001336	3	0	30	4	no	1.000000	3	1.000000	0.001336	1.000000	44.900000
IGS_167	igs	rrs|ycf89	rrs-ycf89	119376	119740	0	365	IRa	0.149772	79	18	117	7	no	1.000000	3	1.000000	0.154388	1.000000	80.000000
ycf89	gene	ycf89	ycf89	119741	120808	-1	1068	IRa	0.073034	116	0	3	38	no	1.000000	3	1.000000	0.073034	1.000000	79.000000
IGS_168	igs	ycf89|OOD24_pgt030	ycf89-OOD24_pgt030	120809	121014	0	206	IRa	0.094309	28	14	3	74	no	1.000000	3	1.000000	0.096452	0.995146	78.200000
OOD24_pgt030	tRNA	OOD24_pgt030	OOD24_pgt030	121015	121088	-1	74	IRa	0.000000	0	0	0	0	no	0.000000	1	0.000000	0.000000	1.000000	18.800000
IGS_169	igs	OOD24_pgt030|atpA	OOD24_pgt030-atpA	121089	121239	0	151	IRa	0.139073	31	1	74	9	no	1.000000	3	1.000000	0.135379	1.000000	73.900000
atpA_part2	gene	atpA	atpA	121240	121340	-1	101	IRa	0.052805	8	0	4	0	no	1.000000	3	1.000000	0.052805	1.000000	69.900000