Hotspot

trnK-UUU-rps16

LSC · 4180-4869 · 690 bp

Back to Haloxylon

Pi 0.00145
MarkerSeek score 59.90
Primer available yes
Label trnK-UUU-rps16

Feature Metadata

label_name
trnK-UUU-rps16
feature_type
igs
region
LSC
length_bp
690
variable_sites
1
pi
0.00145
unique_haplotype_count
2
primer_available
yes
alignment_reliability
1.00
markerseek_score
59.90

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID fwd_seq rev_seq fwd_gc rev_gc fwd_tm rev_tm amplicon_size cross_species_success_rate primer_score
trnK-UUU-rps16_p1 AAAGCCGAGTACTCTACCGT TGCTCAACCTACCGAAACTG 50.0 50.0 58.2 57.8 780-782 bp 1.0 77.6
trnK-UUU-rps16_p2 AAGCCGAGTACTCTACCGTT TGCTCAACCTACCGAAACTG 50.0 50.0 58.2 57.8 779-781 bp 1.0 77.6
trnK-UUU-rps16_p3 AAAGCCGAGTACTCTACCGT GCTCAACCTACCGAAACTGT 50.0 50.0 58.2 57.8 779-781 bp 1.0 77.6
trnK-UUU-rps16_p4 AAGCCGAGTACTCTACCGTT GCTCAACCTACCGAAACTGT 50.0 50.0 58.2 57.8 778-780 bp 1.0 77.6
trnK-UUU-rps16_p5 AAGCCGAGTACTCTACCGTT GTGCTCAACCTACCGAAACT 50.0 50.0 58.2 57.8 780-782 bp 1.0 77.6