primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score rps16-trnQ-UUG_p1 rps16-trnQ-UUG 1 AACGGATCGTGTCCTTCAAG GAAATGAAAATGGGGCGTGG 20 20 50.0 50.0 57.9 58.0 7.8 0.0 0.089038 6179 7792 1762-1857 1.000000 87.5 rps16-trnQ-UUG_p2 rps16-trnQ-UUG 2 AAAGGGCGTTTCCTTGTTCT GAAATGAAAATGGGGCGTGG 20 20 45.0 50.0 57.9 58.0 0.0 0.0 0.076117 6179 7792 2230-2315 1.000000 87.3 rps16-trnQ-UUG_p3 rps16-trnQ-UUG 3 TTGAGCGGTCTTTAAACCCC GAAATGAAAATGGGGCGTGG 20 20 50.0 50.0 58.1 58.0 16.6 0.0 0.108506 6179 7792 2320-2405 1.000000 87.0 rps16-trnQ-UUG_p4 rps16-trnQ-UUG 4 AAAGGGCGTTTCCTTGTTCT CGAAAACTTACGGCAGCTTG 20 20 45.0 50.0 57.9 58.0 0.0 0.0 0.116894 6179 7792 2735-2820 1.000000 85.9 rps16-trnQ-UUG_p5 rps16-trnQ-UUG 5 CTACTCGAGCTTCATCGTGG GAAATGAAAATGGGGCGTGG 20 20 55.0 50.0 57.9 58.0 13.6 0.0 0.121226 6179 7792 1895-1912 0.500000 59.5 trnG-trnR-UCU_p1 trnG-trnR-UCU 1 CTAACGATGCGGGTTCGATT TGTCCTATCCATTAGACAATG 20 21 50.0 38.1 58.4 52.4 0.0 0.0 7.001259 10563 10819 314-335 1.000000 48.4 trnG-trnR-UCU_p2 trnG-trnR-UCU 2 TAACGATGCGGGTTCGATTC TGTCCTATCCATTAGACAATG 20 21 50.0 38.1 58.4 52.4 0.0 0.0 7.005652 10563 10819 313-334 1.000000 48.4 trnG-trnR-UCU_p3 trnG-trnR-UCU 3 AGCCTTCCAAGCTAACGATG TGTCCTATCCATTAGACAATG 20 21 50.0 38.1 58.0 52.4 0.0 0.0 6.598602 10563 10819 325-346 1.000000 48.3 trnG-trnR-UCU_p4 trnG-trnR-UCU 4 CCTAGCCTTCCAAGCTAACG TGTCCTATCCATTAGACAATG 20 21 55.0 38.1 58.1 52.4 0.0 0.0 6.627438 10563 10819 328-349 1.000000 48.3 trnG-trnR-UCU_p5 trnG-trnR-UCU 5 CCCTAGCCTTCCAAGCTAAC TGTCCTATCCATTAGACAATG 20 21 55.0 38.1 57.7 52.4 0.0 0.0 6.902452 10563 10819 329-350 1.000000 48.2 atpF-atpH_p1 atpF-atpH 1 ATTAAACCCGAAACTCCCGG GGACTGGTTGTTGCATTAGC 20 20 50.0 50.0 57.9 57.4 0.0 0.0 0.755081 13859 14227 486-528 1.000000 78.2 atpF-atpH_p2 atpF-atpH 2 CCAGTAGCCCAAAGAAACGA GGACTGGTTGTTGCATTAGC 20 20 50.0 50.0 57.8 57.4 0.0 0.0 0.815680 13859 14227 459-501 1.000000 78.0 atpF-atpH_p3 atpF-atpH 3 ATTAAACCCGAAACTCCCGG CGGAGGGAAAAATACGAGGT 20 20 50.0 50.0 57.9 57.3 0.0 0.0 0.804163 13859 14227 551-593 1.000000 77.3 atpF-atpH_p4 atpF-atpH 4 ATTAAACCCGAAACTCCCGG GCGGAGGGAAAAATACGAGG 20 20 50.0 55.0 57.9 58.7 0.0 0.0 0.821586 13859 14227 552-594 1.000000 77.2 atpF-atpH_p5 atpF-atpH 5 ATTAAACCCGAAACTCCCGG GGCGGAGGGAAAAATACGAG 20 20 50.0 55.0 57.9 58.7 0.0 0.0 0.821586 13859 14227 553-595 1.000000 77.2 rpoB-trnC-GCA_p1 rpoB-trnC-GCA 1 CTTCATTTCCATCCCGTAGCA AAAAGGATTTGCAGTCCCCC 21 20 47.6 50.0 58.1 58.4 0.0 14.6 1.437558 27817 29058 1279-1308 1.000000 75.6 rpoB-trnC-GCA_p2 rpoB-trnC-GCA 2 TTCATTTCCATCCCGTAGCA AAAAGGATTTGCAGTCCCCC 20 20 45.0 50.0 56.9 58.4 0.0 14.6 1.446590 27817 29058 1278-1307 1.000000 75.5 rpoB-trnC-GCA_p3 rpoB-trnC-GCA 3 TTCCTTCATTTCCATCCCGT AAAAGGATTTGCAGTCCCCC 20 20 45.0 50.0 56.8 58.4 0.0 14.6 1.549445 27817 29058 1282-1311 1.000000 74.7 rpoB-trnC-GCA_p4 rpoB-trnC-GCA 4 TCATTTCCATCCCGTAGCAT AAAAGGATTTGCAGTCCCCC 20 20 45.0 50.0 56.7 58.4 0.0 14.6 1.678353 27817 29058 1277-1306 1.000000 73.7 rpoB-trnC-GCA_p5 rpoB-trnC-GCA 5 TTCATTTCCATCCCGTAGCAT AAAAGGATTTGCAGTCCCCC 21 20 42.9 50.0 57.4 58.4 0.0 14.6 1.931569 27817 29058 1278-1307 1.000000 71.7 trnE-UUC-trnT-GGU_p1 trnE-UUC-trnT-GGU 1 TTTCGTAGTACCCTACCCCC GAACCGATGACTTACGCCTT 20 20 55.0 50.0 57.8 58.0 0.0 0.0 0.165150 32361 33164 916-971 1.000000 85.5 trnE-UUC-trnT-GGU_p2 trnE-UUC-trnT-GGU 2 TTTCGTAGTACCCTACCCCC CCATGGCGTTACTCTACCAC 20 20 55.0 55.0 57.8 58.1 0.0 0.0 0.223247 32361 33164 895-950 1.000000 85.2 trnE-UUC-trnT-GGU_p3 trnE-UUC-trnT-GGU 3 TTTCGTAGTACCCTACCCCC TGGCGTTACTCTACCACTGA 20 20 55.0 50.0 57.8 58.1 0.0 0.0 0.245401 32361 33164 892-947 1.000000 85.0 trnE-UUC-trnT-GGU_p4 trnE-UUC-trnT-GGU 4 GCTGCCTCCTTGAAAGAGAG GAACCGATGACTTACGCCTT 20 20 55.0 50.0 58.3 58.0 0.0 0.0 0.269359 32361 33164 878-933 1.000000 85.0 trnE-UUC-trnT-GGU_p5 trnE-UUC-trnT-GGU 5 TGTCCTGAACCACTAGACGA GAACCGATGACTTACGCCTT 20 20 50.0 50.0 57.7 58.0 0.0 0.0 0.287509 32361 33164 857-912 1.000000 85.0 trnT-GGU-psbD_p1 trnT-GGU-psbD 1 GGCGTAAGTCATCGGTTCAA TTTACCAAGGGCTATAGTCA 20 20 50.0 40.0 58.3 53.0 0.0 6.7 5.273069 33237 34755 1565-1590 1.000000 46.9 trnT-GGU-psbD_p2 trnT-GGU-psbD 2 GTGGTAGAGTAACGCCATGG TTTACCAAGGGCTATAGTCA 20 20 55.0 40.0 58.1 53.0 7.6 6.7 5.054330 33237 34755 1588-1613 1.000000 46.8 trnT-GGU-psbD_p3 trnT-GGU-psbD 3 GTGGTAGAGTAACGCCATGG TTACCAAGGGCTATAGTCAT 20 20 55.0 40.0 58.1 52.8 7.6 6.7 5.305690 33237 34755 1587-1612 1.000000 46.8 trnT-GGU-psbD_p4 trnT-GGU-psbD 4 TCAGTGGTAGAGTAACGCCA TTTACCAAGGGCTATAGTCA 20 20 50.0 40.0 58.1 53.0 0.0 6.7 5.076485 33237 34755 1591-1616 1.000000 46.7 trnT-GGU-psbD_p5 trnT-GGU-psbD 5 GGCCCTTTTAACTCAGTGGT TTTACCAAGGGCTATAGTCA 20 20 50.0 40.0 57.7 53.0 0.0 6.7 5.278240 33237 34755 1603-1628 1.000000 46.7 trnT-UGU-trnL-UAA_p1 trnT-UGU-trnL-UAA 1 TCTTTGGAAAAGGGGGAACG ACCAATTTCGCCATATCCCC 20 20 50.0 50.0 58.0 58.0 0.2 0.0 0.014917 48684 49686 1172-1184 1.000000 91.2 trnT-UGU-trnL-UAA_p2 trnT-UGU-trnL-UAA 2 TCTTTGGAAAAGGGGGAACG TAGCGTCTACCAATTTCGCC 20 20 50.0 50.0 58.0 58.1 0.2 0.0 0.079726 48684 49686 1180-1192 1.000000 90.6 trnT-UGU-trnL-UAA_p3 trnT-UGU-trnL-UAA 3 CCTGTTGATCCCTTGGCTTT ACCAATTTCGCCATATCCCC 20 20 50.0 50.0 58.1 58.0 0.0 0.0 0.075756 48684 49686 1656-1669 1.000000 88.6 trnT-UGU-trnL-UAA_p4 trnT-UGU-trnL-UAA 4 TTAACTAATTGGCGGGCTCC ACCAATTTCGCCATATCCCC 20 20 50.0 50.0 58.0 58.0 2.4 0.0 0.051626 48684 49686 1752-1765 1.000000 88.4 trnT-UGU-trnL-UAA_p5 trnT-UGU-trnL-UAA 5 CGAAGCCATACCCAATCGAA ACCAATTTCGCCATATCCCC 20 20 50.0 50.0 58.1 58.0 0.0 0.0 0.056519 48684 49686 1723-1736 1.000000 88.4 cemA-petA_p1 cemA-petA 1 AAATCGCGTATCTCCGTCAC GCGATACGGAAATGGATCGA 20 20 50.0 50.0 58.2 57.9 5.8 12.2 0.223942 64134 64367 341-355 1.000000 85.0 cemA-petA_p2 cemA-petA 2 AAATCGCGTATCTCCGTCAC AGCGATACGGAAATGGATCG 20 20 50.0 50.0 58.2 57.9 5.8 4.1 0.229609 64134 64367 342-356 1.000000 84.9 cemA-petA_p3 cemA-petA 3 AAATCGCGTATCTCCGTCAC GCACTTGAAATGGATGTCCG 20 20 50.0 50.0 58.2 57.5 5.8 0.0 0.713250 64134 64367 381-395 1.000000 80.7 cemA-petA_p4 cemA-petA 4 GCGTATCTCCGTCACTTGTA GCGATACGGAAATGGATCGA 20 20 50.0 50.0 57.2 57.9 0.0 12.2 0.898712 64134 64367 336-350 1.000000 79.6 cemA-petA_p5 cemA-petA 5 GCGTATCTCCGTCACTTGTA AGCGATACGGAAATGGATCG 20 20 50.0 50.0 57.2 57.9 0.0 4.1 0.904379 64134 64367 337-351 1.000000 79.6 petA-psbJ_p1 petA-psbJ 1 CCATTACGTGTTCAAGGCCT ATTCCGGATTGGGTTCATCC 20 20 50.0 50.0 58.2 57.6 0.0 4.1 0.543756 65331 66379 1180-1192 1.000000 80.4 petA-psbJ_p2 petA-psbJ 2 TCCATTACGTGTTCAAGGCC ATTCCGGATTGGGTTCATCC 20 20 50.0 50.0 58.2 57.6 0.0 4.1 0.548898 65331 66379 1181-1193 1.000000 80.3 petA-psbJ_p3 petA-psbJ 3 GCATCTGTTGTTTTGGCACA ATTCCGGATTGGGTTCATCC 20 20 45.0 50.0 57.8 57.6 0.0 4.1 0.586979 65331 66379 1147-1159 1.000000 80.2 petA-psbJ_p4 petA-psbJ 4 AGCATCTGTTGTTTTGGCAC ATTCCGGATTGGGTTCATCC 20 20 45.0 50.0 57.5 57.6 0.0 4.1 0.879177 65331 66379 1148-1160 1.000000 77.8 petA-psbJ_p5 petA-psbJ 5 ACGTGTTCAAGGCCTTTTGT ATTCCGGATTGGGTTCATCC 20 20 45.0 50.0 58.5 57.6 17.6 4.1 0.894921 65331 66379 1175-1187 1.000000 77.6 psbT-psbN_p1 psbT-psbN 1 TCGAGAACCGCCTAAAGTTC TCGAGGAACATGGGGACTAA 20 20 50.0 50.0 57.6 57.8 0.0 0.0 0.600220 76841 76900 120-120 1.000000 77.9 psbT-psbN_p2 psbT-psbN 2 TCGAGAACCGCCTAAAGTTC TTCGAGGAACATGGGGACTA 20 20 50.0 50.0 57.6 57.8 0.0 0.0 0.600220 76841 76900 121-121 1.000000 77.8 psbT-psbN_p3 psbT-psbN 3 TCGAGAACCGCCTAAAGTTC CATTCGAGGAACATGGGGAC 20 20 50.0 55.0 57.6 58.3 0.0 0.0 0.690520 76841 76900 123-123 1.000000 77.1 psbT-psbN_p4 psbT-psbN 4 GAGAACCGCCTAAAGTTCCA TCGAGGAACATGGGGACTAA 20 20 50.0 50.0 57.5 57.8 0.0 0.0 0.708847 76841 76900 118-118 1.000000 77.0 psbT-psbN_p5 psbT-psbN 5 TCGAGAACCGCCTAAAGTTC GGGTACGCCTTATATACCGC 20 20 50.0 55.0 57.6 57.7 0.0 0.0 0.643202 76841 76900 175-175 1.000000 76.7 rps8-rpl14_p1 rps8-rpl14 1 AGCAATAGTGTCCCTACCCA GCCCGAGAATTGAGACAGTT 20 20 50.0 50.0 57.7 57.9 0.0 0.0 0.364500 83133 83321 273-280 1.000000 82.3 rps8-rpl14_p2 rps8-rpl14 2 AGCAATAGTGTCCCTACCCA TCATTGGCTCCCGAGGTATT 20 20 50.0 50.0 57.7 58.5 0.0 0.0 0.756755 83133 83321 234-241 1.000000 80.0 rps8-rpl14_p3 rps8-rpl14 3 AGCAATAGTGTCCCTACCCA TTCATTGGCTCCCGAGGTAT 20 20 50.0 50.0 57.7 58.5 0.0 0.0 0.756755 83133 83321 235-242 1.000000 80.0 rps8-rpl14_p4 rps8-rpl14 4 CAGCAATAGTGTCCCTACCC GCCCGAGAATTGAGACAGTT 20 20 55.0 50.0 57.4 57.9 0.0 0.0 0.722668 83133 83321 274-281 1.000000 79.4 rps8-rpl14_p5 rps8-rpl14 5 AGCAATAGTGTCCCTACCCA TAGTTTCATTGGCTCCCGAG 20 20 50.0 50.0 57.7 57.3 0.0 0.0 0.955304 83133 83321 239-246 1.000000 78.3 ndhF_p1 ndhF 1 ACGAAGGGGACTAAACAGGA TGACCTATTGTGACTTCGTGA 20 21 50.0 42.9 58.0 56.7 0.0 0.0 2.317332 112898 115144 2741-2753 0.500000 42.0 ndhF_p2 ndhF 2 GCAGAATACCGTCACCCATT TGACCTATTGTGACTTCGTGA 20 21 50.0 42.9 58.0 56.7 0.0 0.0 2.335912 112898 115144 2830-2842 0.500000 41.9 ndhF_p3 ndhF 3 ACAGGAACAAGAGGGATCCA TGACCTATTGTGACTTCGTGA 20 21 50.0 42.9 58.0 56.7 15.2 0.0 2.342318 112898 115144 2727-2739 0.500000 41.8 ndhF_p4 ndhF 4 AAGAGGGATCCACCGAAGAA TGACCTATTGTGACTTCGTGA 20 21 50.0 42.9 58.0 56.7 15.2 0.0 2.344904 112898 115144 2719-2731 0.500000 41.8 ndhF_p5 ndhF 5 GAGGATCCGGACAAAATCGA ATCGAGGAAAGAATACGCCT 20 20 50.0 45.0 57.4 56.4 6.1 0.0 2.168845 112898 115144 2990-2990 0.250000 32.6 ndhF-rpl32_p1 ndhF-rpl32 1 AAAAGCCCACATACGACGAA TAGATTGGGTTGAAAGCGGG 20 20 45.0 50.0 57.8 57.9 0.0 0.0 0.295634 115145 115815 1468-1629 1.000000 83.1 ndhF-rpl32_p2 ndhF-rpl32 2 CAGGCCGTGTAAACCAAAAC TAGATTGGGTTGAAAGCGGG 20 20 50.0 50.0 57.9 57.9 0.0 0.0 0.251151 115145 115815 1850-2011 1.000000 82.7 ndhF-rpl32_p3 ndhF-rpl32 3 ACAGGCCGTGTAAACCAAAA TAGATTGGGTTGAAAGCGGG 20 20 45.0 50.0 58.2 57.9 6.1 0.0 0.357553 115145 115815 1851-2012 1.000000 81.9 ndhF-rpl32_p4 ndhF-rpl32 4 AAAAGAAGAAGTCCCGCTCC TAGATTGGGTTGAAAGCGGG 20 20 50.0 50.0 57.8 57.9 0.0 0.0 0.309315 115145 115815 1428-1428 0.500000 58.2 ndhF-rpl32_p5 ndhF-rpl32 5 AAGAAGAAGTCCCGCTCCTA TAGATTGGGTTGAAAGCGGG 20 20 50.0 50.0 57.8 57.9 0.0 0.0 0.356088 115145 115815 1426-1426 0.500000 57.8 rpl32-trnL-UAG_p1 rpl32-trnL-UAG 1 GGGAAATCTCTTTCAAGCGG GACGGAATGGAAATCGGGAA 20 20 50.0 50.0 56.8 58.0 1.0 0.0 1.246254 115978 116898 1126-1126 0.250000 40.0 rpl32-trnL-UAG_p2 rpl32-trnL-UAG 2 GGGAAATCTCTTTCAAGCGG ATGACGGAATGGAAATCGGG 20 20 50.0 50.0 56.8 58.0 1.0 0.0 1.246255 115978 116898 1128-1128 0.250000 40.0 rpl32-trnL-UAG_p3 rpl32-trnL-UAG 3 AGGGAAATCTCTTTCAAGCGG GACGGAATGGAAATCGGGAA 21 20 47.6 50.0 58.3 58.0 1.0 0.0 1.316463 115978 116898 1127-1127 0.250000 39.5 rpl32-trnL-UAG_p4 rpl32-trnL-UAG 4 AGGGAAATCTCTTTCAAGCGG ATGACGGAATGGAAATCGGG 21 20 47.6 50.0 58.3 58.0 1.0 0.0 1.316464 115978 116898 1129-1129 0.250000 39.5 rpl32-trnL-UAG_p5 rpl32-trnL-UAG 5 GGGAAATCTCTTTCAAGCGGA GACGGAATGGAAATCGGGAA 21 20 47.6 50.0 58.3 58.0 1.0 0.0 1.321138 115978 116898 1126-1126 0.250000 39.4 ndhG-ndhI_p1 ndhG-ndhI 1 GCTACAGCGATTGCACCTAT AACAAACAGTACGAGCTGCA 20 20 50.0 45.0 58.1 58.1 7.9 1.0 0.180816 121462 121836 1350-1363 1.000000 82.9 ndhG-ndhI_p2 ndhG-ndhI 2 GCTACAGCGATTGCACCTAT ACAAACAGTACGAGCTGCAA 20 20 50.0 45.0 58.1 58.1 7.9 1.0 0.180816 121462 121836 1349-1362 1.000000 82.9 ndhG-ndhI_p3 ndhG-ndhI 3 GCTACAGCGATTGCACCTAT CAAGGCTGAGAATGGACCAA 20 20 50.0 50.0 58.1 57.8 7.9 0.0 0.333942 121462 121836 1588-1601 1.000000 81.4 ndhG-ndhI_p4 ndhG-ndhI 4 GCTACAGCGATTGCACCTAT AAGGCTGAGAATGGACCAAC 20 20 50.0 50.0 58.1 57.8 7.9 0.0 0.335496 121462 121836 1599-1600 0.500000 57.6 ndhG-ndhI_p5 ndhG-ndhI 5 GCTACAGCGATTGCACCTAT TTTGTGGCAATTGCGTTGAA 20 20 50.0 40.0 58.1 57.7 7.9 23.5 0.428913 121462 121836 1083-1084 0.500000 56.9 ycf1_p1 ycf1 1 ATCCGCGCTTTCTCTTTTCT ACGAAGGGGACTAAACAGGA 20 20 45.0 50.0 57.9 58.0 5.6 0.0 0.120412 130525 130644 1568-1586 1.000000 85.7 ycf1_p2 ycf1 2 TCCGCGCTTTCTCTTTTCTT ACGAAGGGGACTAAACAGGA 20 20 45.0 50.0 58.1 58.0 5.6 0.0 0.140854 130525 130644 1567-1585 1.000000 85.6 ycf1_p3 ycf1 3 ATCCGCGCTTTCTCTTTTCT ACAGGAACAAGAGGGATCCA 20 20 45.0 50.0 57.9 58.0 5.6 15.2 0.145397 130525 130644 1554-1572 1.000000 85.6 ycf1_p4 ycf1 4 ATCCGCGCTTTCTCTTTTCT AAGAGGGATCCACCGAAGAA 20 20 45.0 50.0 57.9 58.0 5.6 15.2 0.147983 130525 130644 1546-1564 1.000000 85.6 ycf1_p5 ycf1 5 GCTACTTCTATCCGCGCTTT ACGAAGGGGACTAAACAGGA 20 20 50.0 50.0 58.1 58.0 5.6 0.0 0.165581 130525 130644 1577-1595 1.000000 85.4