feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score psbA gene psbA psbA 85 1146 -1 1062 LSC 0.002288 15 0 22 110 no 0.333333 14 0.714286 0.002288 1.000000 35.700000 IGS_001 igs psbA|trnK psbA-trnK 1147 1382 0 236 LSC 0.016800 13 21 257 134 no 0.300000 13 0.692308 0.016427 1.000000 55.000000 trnK_part2 tRNA trnK trnK 1383 1407 -1 25 LSC 0.000000 0 0 32 109 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 matK gene matK matK 1678 3213 -1 1536 LSC 0.010554 75 0 2 8 no 0.766667 26 0.884615 0.010554 1.000000 50.300000 IGS_004 igs matK|trnK matK-trnK 3214 3908 0 695 LSC 0.014718 41 76 15 30 no 0.466667 20 0.700000 0.014716 1.000000 54.900000 trnK_part1 tRNA trnK trnK 3909 3947 -1 39 LSC 0.013027 1 0 128 23 no 0.000000 2 0.000000 0.013027 1.000000 29.500000 IGS_005 igs trnK|rps16 trnK-rps16 3948 4493 0 546 LSC 0.028177 58 45 8 150 yes 0.700000 24 0.875000 0.028216 1.000000 68.400000 rps16 gene rps16 rps16 4494 5526 -1 1033 LSC 0.008754 35 3 30 9 no 0.666667 24 0.833333 0.008770 0.997096 46.600000 IGS_006 igs rps16|trnQ rps16-trnQ 5527 6597 0 1071 LSC 0.018840 91 628 62 150 yes 1.000000 30 1.000000 0.018573 0.988796 72.800000 trnQ tRNA trnQ trnQ 6598 6669 -1 72 LSC 0.000000 0 0 7 78 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_007 igs trnQ|psbK trnQ-psbK 6670 7014 0 345 LSC 0.013648 18 7 79 92 no 0.200000 14 0.428571 0.013562 1.000000 44.400000 psbK gene psbK psbK 7015 7167 1 153 LSC 0.005424 6 0 39 6 no 0.133333 7 0.571429 0.005424 1.000000 29.000000 IGS_008 igs psbK|psbI psbK-psbI 7168 7566 0 399 LSC 0.023318 42 58 60 189 yes 0.600000 22 0.818182 0.023558 1.000000 65.300000 psbI gene psbI psbI 7567 7677 1 111 LSC 0.001201 2 0 54 78 no 0.066667 3 0.666667 0.001201 1.000000 26.800000 IGS_009 igs psbI|trnS psbI-trnS 7678 7797 0 120 LSC 0.006418 7 0 165 89 no 0.200000 8 0.750000 0.006418 1.000000 39.400000 trnS tRNA trnS trnS 7798 7885 -1 88 LSC 0.000000 0 0 41 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_010 igs trnS|psbD trnS-psbD 7886 8842 0 957 LSC 0.016910 66 72 129 101 yes 0.733333 25 0.880000 0.016902 1.000000 68.700000 psbD gene psbD psbD 8843 9904 1 1062 LSC 0.004866 18 0 131 99 no 0.266667 13 0.615385 0.004866 1.000000 41.700000 psbC gene psbC psbC 9852 11273 1 1422 LSC 0.003212 21 0 300 0 no 0.266667 13 0.615385 0.003212 1.000000 33.300000 IGS_012 igs psbC|trnS psbC-trnS 11274 11425 0 152 LSC 0.008182 8 1 54 93 no 0.166667 9 0.555556 0.008221 1.000000 36.900000 trnS tRNA trnS trnS 11426 11513 -1 88 LSC 0.000000 0 0 25 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_013 igs trnS|psbZ trnS-psbZ 11514 11869 0 356 LSC 0.015351 19 20 113 193 no 0.266667 14 0.571429 0.015121 0.946629 51.600000 psbZ gene psbZ psbZ 11870 12058 1 189 LSC 0.001058 3 0 49 4 no 0.100000 4 0.750000 0.001058 1.000000 23.400000 IGS_014 igs psbZ|trnG psbZ-trnG 12059 12325 0 267 LSC 0.014869 16 7 238 102 no 0.366667 16 0.687500 0.015015 1.000000 50.600000 IGS_015 igs trnG|trnfM trnG-trnfM 12397 12861 0 465 LSC 0.035799 54 12 97 120 yes 0.500000 20 0.750000 0.036008 0.995699 70.500000 trnfM tRNA trnfM trnfM 12862 12934 -1 73 LSC 0.000000 0 0 3 47 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_016 igs trnfM|trnG trnfM-trnG 12935 13025 0 91 LSC 0.014122 5 9 76 65 no 0.066667 6 0.333333 0.014313 1.000000 44.000000 trnG_part2 tRNA trnG trnG 13026 13073 -1 48 LSC 0.000000 0 0 20 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 trnG_part1 tRNA trnG trnG 13725 13748 -1 24 LSC 0.000000 0 0 34 39 no 0.000000 1 0.000000 0.000000 1.000000 21.300000 IGS_019 igs trnG|trnT trnG-trnT 13749 15387 0 1639 LSC 0.024554 164 1157 58 162 yes 0.933333 29 0.965517 0.024798 0.978646 74.500000 trnT tRNA trnT trnT 15388 15459 1 72 LSC 0.001788 1 0 68 90 no 0.000000 2 0.000000 0.001788 1.000000 26.400000 IGS_020 igs trnT|trnE trnT-trnE 15460 15930 0 471 LSC 0.017133 30 12 140 75 no 0.433333 19 0.684211 0.016861 0.997877 54.800000 trnE tRNA trnE trnE 15931 16003 1 73 LSC 0.000000 0 0 35 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_021 igs trnE|trnY trnE-trnY 16004 16069 0 66 LSC 0.013166 3 0 108 27 no 0.033333 4 0.250000 0.013166 1.000000 33.000000 trnY tRNA trnY trnY 16070 16153 1 84 LSC 0.006048 1 0 25 18 no 0.000000 2 0.000000 0.006048 1.000000 24.300000 IGS_022 igs trnY|trnD trnY-trnD 16154 16502 0 349 LSC 0.022091 33 78 56 93 no 0.500000 19 0.789474 0.022669 0.982808 60.000000 trnD tRNA trnD trnD 16503 16576 1 74 LSC 0.000000 0 0 0 19 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_023 igs trnD|psbM trnD-psbM 16577 17371 0 795 LSC 0.014408 45 23 74 113 no 0.533333 22 0.727273 0.014372 0.978616 56.800000 psbM gene psbM psbM 17372 17476 1 105 LSC 0.000635 1 0 160 8 no 0.033333 2 0.500000 0.000635 1.000000 21.500000 IGS_024 igs psbM|petN psbM-petN 17477 18107 0 631 LSC 0.009327 31 9 265 0 no 0.500000 19 0.789474 0.009392 0.998415 46.300000 petN gene petN petN 18108 18197 -1 90 LSC 0.004419 2 0 65 20 no 0.033333 3 0.333333 0.004419 1.000000 25.600000 IGS_025 igs petN|trnC petN-trnC 18198 19052 0 855 LSC 0.016121 65 15 89 227 no 0.700000 24 0.875000 0.016096 0.998830 63.700000 trnC tRNA trnC trnC 19053 19123 -1 71 LSC 0.000000 0 0 78 156 no 0.000000 1 0.000000 0.000000 1.000000 24.600000 IGS_026 igs trnC|rpoB trnC-rpoB 19124 20237 0 1114 LSC 0.011880 68 19 149 167 yes 0.800000 27 0.888889 0.011972 0.991921 66.000000 rpoB gene rpoB rpoB 20238 23468 1 3231 LSC 0.004388 70 0 52 159 no 0.700000 25 0.840000 0.004388 1.000000 43.200000 IGS_027 igs rpoB|rpoC1 rpoB-rpoC1 23469 23505 0 37 LSC 0.003604 2 0 300 122 no 0.066667 3 0.666667 0.003604 1.000000 37.500000 rpoC1 gene rpoC1 rpoC1 23506 25554 1 2049 LSC 0.005476 51 3 300 10 no 0.666667 24 0.833333 0.005480 1.000000 42.900000 IGS_028 igs rpoC1|rpoC2 rpoC1-rpoC2 25555 25752 0 198 LSC 0.006966 9 0 101 251 no 0.233333 10 0.700000 0.006966 1.000000 39.500000 rpoC2 gene rpoC2 rpoC2 25753 30273 1 4521 LSC 0.006071 133 60 86 61 no 0.833333 27 0.925926 0.006013 1.000000 47.700000 IGS_029 igs rpoC2|rps2 rpoC2-rps2 30274 30553 0 280 LSC 0.010246 16 2 18 8 no 0.400000 16 0.750000 0.010310 0.992857 39.300000 rps2 gene rps2 rps2 30554 31264 1 711 LSC 0.007045 18 0 56 20 no 0.300000 13 0.692308 0.007045 1.000000 38.500000 IGS_030 igs rps2|atpI rps2-atpI 31265 31516 0 252 LSC 0.009588 10 1 1 245 no 0.266667 13 0.615385 0.009590 1.000000 33.600000 atpI gene atpI atpI 31517 32260 1 744 LSC 0.001770 6 0 121 8 no 0.033333 6 0.166667 0.001770 1.000000 28.000000 IGS_031 igs atpI|atpH atpI-atpH 32261 32869 0 609 LSC 0.012313 35 37 33 92 no 0.566667 22 0.772727 0.012463 1.000000 56.800000 atpH gene atpH atpH 32870 33115 1 246 LSC 0.008317 6 0 90 11 no 0.133333 8 0.500000 0.008317 1.000000 28.900000 IGS_032 igs atpH|atpF atpH-atpF 33116 33556 0 441 LSC 0.012488 21 13 108 156 no 0.266667 13 0.615385 0.012466 1.000000 50.000000 atpF gene atpF atpF 33557 34953 1 1397 LSC 0.006905 39 17 59 6 no 0.633333 22 0.863636 0.006948 0.994989 45.300000 IGS_033 igs atpF|atpA atpF-atpA 34954 35045 0 92 LSC 0.021639 5 0 12 176 no 0.033333 5 0.200000 0.021639 1.000000 36.800000 atpA gene atpA atpA 35046 36569 1 1524 LSC 0.006439 39 0 22 40 no 0.433333 19 0.684211 0.006439 1.000000 40.800000 IGS_034 igs atpA|trnR atpA-trnR 36570 36693 0 124 LSC 0.006618 3 1 84 75 no 0.033333 4 0.250000 0.006670 0.991935 31.800000 trnR tRNA trnR trnR 36694 36765 -1 72 LSC 0.000000 0 0 75 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_035 igs trnR|rps14 trnR-rps14 36766 37144 0 379 LSC 0.025851 34 5 147 96 no 0.500000 20 0.750000 0.025870 1.000000 61.500000 rps14 gene rps14 rps14 37145 37456 -1 312 LSC 0.004730 7 0 35 5 no 0.166667 8 0.625000 0.004730 1.000000 27.400000 IGS_036 igs rps14|psaB rps14-psaB 37457 37606 0 150 LSC 0.015709 10 0 94 24 no 0.133333 7 0.571429 0.015709 1.000000 38.500000 psaB gene psaB psaB 37607 39811 -1 2205 LSC 0.003532 33 0 47 190 no 0.466667 19 0.736842 0.003532 1.000000 39.300000 IGS_037 igs psaB|psaA psaB-psaA 39812 39836 0 25 LSC 0.002667 1 0 92 165 no 0.033333 2 0.500000 0.002667 1.000000 32.500000 psaA gene psaA psaA 39837 42089 -1 2253 LSC 0.003190 31 0 117 255 no 0.266667 16 0.500000 0.003190 1.000000 40.400000 IGS_038 igs psaA|ycf3 psaA-ycf3 42090 42696 0 607 LSC 0.010281 37 16 287 60 no 0.666667 24 0.833333 0.009981 0.996705 57.400000 ycf3 gene ycf3 ycf3 42697 44666 -1 1970 LSC 0.004606 43 0 81 76 no 0.500000 19 0.789474 0.004606 1.000000 43.900000 IGS_039 igs ycf3|rps4 ycf3-rps4 44667 45646 0 980 LSC 0.021911 69 69 283 69 yes 0.733333 25 0.880000 0.021619 0.994898 68.400000 rps4 gene rps4 rps4 45647 46252 -1 606 LSC 0.005694 17 0 90 14 no 0.233333 11 0.636364 0.005694 1.000000 36.500000 IGS_040 igs rps4|trnT rps4-trnT 46253 46554 0 302 LSC 0.007262 15 3 73 106 no 0.266667 14 0.571429 0.007313 0.993377 39.800000 trnT tRNA trnT trnT 46555 46627 -1 73 LSC 0.000000 0 0 54 33 no 0.000000 1 0.000000 0.000000 1.000000 21.200000 IGS_041 igs trnT|trnL trnT-trnL 46628 47405 0 778 LSC 0.024567 73 86 127 149 yes 0.700000 25 0.840000 0.023656 0.965296 75.000000 trnL_part1 tRNA trnL trnL 47406 47440 1 35 LSC 0.000000 0 0 75 114 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 trnL_part2 tRNA trnL trnL 47946 47995 1 50 LSC 0.003724 1 0 143 27 no 0.000000 2 0.000000 0.003724 1.000000 25.000000 IGS_044 igs trnL|trnF trnL-trnF 47996 48359 0 364 LSC 0.020312 34 39 193 87 yes 0.933333 29 0.965517 0.020888 0.969780 70.000000 trnF tRNA trnF trnF 48360 48432 1 73 LSC 0.000000 0 0 83 14 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_045 igs trnF|ndhJ trnF-ndhJ 48433 48920 0 488 LSC 0.018932 36 23 156 141 yes 0.533333 21 0.761905 0.018953 1.000000 66.800000 ndhJ gene ndhJ ndhJ 48921 49400 -1 480 LSC 0.003185 8 0 7 94 no 0.166667 9 0.555556 0.003185 1.000000 29.700000 IGS_046 igs ndhJ|ndhK ndhJ-ndhK 49401 49497 0 97 LSC 0.008840 5 0 266 6 no 0.100000 6 0.500000 0.008840 1.000000 31.500000 ndhK gene ndhK ndhK 49498 50238 -1 741 LSC 0.003723 15 0 1 59 no 0.266667 14 0.571429 0.003723 1.000000 34.300000 ndhC gene ndhC ndhC 50229 50591 -1 363 LSC 0.002109 6 0 100 27 no 0.166667 7 0.714286 0.002109 1.000000 28.200000 IGS_048 igs ndhC|trnV ndhC-trnV 50592 51451 0 860 LSC 0.018432 63 181 293 260 yes 0.733333 24 0.916667 0.018571 0.998837 75.900000 trnV_part2 tRNA trnV trnV 51452 51486 -1 35 LSC 0.000000 0 0 28 225 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 trnV_part1 tRNA trnV trnV 52085 52123 -1 39 LSC 0.000000 0 0 38 56 no 0.000000 1 0.000000 0.000000 1.000000 21.600000 IGS_051 igs trnV|trnM trnV-trnM 52124 52304 0 181 LSC 0.024932 13 1 77 102 no 0.233333 12 0.583333 0.025061 0.994475 49.600000 trnM tRNA trnM trnM 52305 52377 1 73 LSC 0.000000 0 0 47 29 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_052 igs trnM|atpE trnM-atpE 52378 52492 0 115 LSC 0.005637 3 0 120 128 no 0.066667 4 0.500000 0.005637 1.000000 34.800000 atpE gene atpE atpE 52493 52906 -1 414 LSC 0.003604 8 0 85 139 no 0.100000 6 0.500000 0.003604 1.000000 33.400000 atpB gene atpB atpB 52903 54399 -1 1497 LSC 0.006393 34 0 217 17 no 0.400000 17 0.705882 0.006393 1.000000 39.500000 IGS_054 igs atpB|rbcL atpB-rbcL 54400 55175 0 776 LSC 0.010410 31 16 23 300 no 0.500000 21 0.714286 0.010607 0.980670 47.800000 rbcL gene rbcL rbcL 55176 56606 1 1431 LSC 0.002811 20 0 45 136 no 0.300000 14 0.642857 0.002811 1.000000 37.000000 IGS_055 igs rbcL|psaI rbcL-psaI 56607 58039 0 1433 LSC 0.015013 102 322 300 221 yes 0.933333 29 0.965517 0.015394 0.973482 78.000000 psaI gene psaI psaI 58040 58150 1 111 LSC 0.000601 1 0 107 110 no 0.033333 2 0.500000 0.000601 1.000000 28.800000 IGS_056 igs psaI|ycf4 psaI-ycf4 58151 58459 0 309 LSC 0.012089 14 39 218 74 no 0.200000 11 0.545455 0.012972 1.000000 44.800000 ycf4 gene ycf4 ycf4 58460 59017 1 558 LSC 0.003102 8 0 21 3 no 0.133333 7 0.571429 0.003102 1.000000 30.000000 IGS_057 igs ycf4|cemA ycf4-cemA 59018 59252 0 235 LSC 0.020973 14 0 224 140 no 0.100000 9 0.333333 0.020973 1.000000 48.000000 cemA gene cemA cemA 59253 59942 1 690 LSC 0.006390 17 0 8 11 no 0.266667 12 0.666667 0.006390 1.000000 36.600000 IGS_058 igs cemA|petA cemA-petA 59943 60166 0 224 LSC 0.014009 9 0 36 92 no 0.133333 8 0.500000 0.014009 1.000000 35.300000 petA gene petA petA 60167 61135 1 969 LSC 0.005507 23 9 52 17 no 0.300000 15 0.600000 0.005423 0.993808 38.300000 IGS_059 igs petA|psbJ petA-psbJ 61136 61963 0 828 LSC 0.012619 58 31 100 59 no 0.600000 23 0.782609 0.012559 0.991546 59.400000 psbJ gene psbJ psbJ 61964 62086 -1 123 LSC 0.006242 3 0 109 224 no 0.033333 4 0.250000 0.006242 1.000000 33.400000 IGS_060 igs psbJ|psbL psbJ-psbL 62087 62211 0 125 LSC 0.000533 1 0 63 99 no 0.033333 2 0.500000 0.000533 1.000000 25.300000 psbL gene psbL psbL 62212 62328 -1 117 LSC 0.003399 2 0 188 300 no 0.033333 3 0.333333 0.003399 1.000000 37.100000 IGS_061 igs psbL|psbF psbL-psbF 62329 62350 0 22 LSC 0.000000 0 0 17 300 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 psbF gene psbF psbF 62351 62470 -1 120 LSC 0.001073 1 0 39 300 no 0.000000 2 0.000000 0.001073 1.000000 23.200000 IGS_062 igs psbF|psbE psbF-psbE 62471 62480 0 10 LSC 0.000000 0 0 159 300 no 0.000000 1 0.000000 NA 1.000000 30.700000 psbE gene psbE psbE 62481 62732 -1 252 LSC 0.000529 2 0 169 141 no 0.066667 3 0.666667 0.000529 1.000000 31.800000 IGS_063 igs psbE|petL psbE-petL 62733 63935 0 1203 LSC 0.015528 76 30 300 119 yes 0.700000 24 0.875000 0.015384 0.999169 64.900000 petL gene petL petL 63936 64031 1 96 LSC 0.000000 0 0 78 23 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 IGS_064 igs petL|petG petL-petG 64032 64204 0 173 LSC 0.011348 10 4 174 128 no 0.166667 9 0.555556 0.011363 1.000000 46.700000 petG gene petG petG 64205 64318 1 114 LSC 0.001129 1 0 65 14 no 0.000000 2 0.000000 0.001129 1.000000 21.400000 IGS_065 igs petG|trnW petG-trnW 64319 64440 0 122 LSC 0.010138 7 0 179 113 no 0.166667 7 0.714286 0.010138 1.000000 42.100000 trnW tRNA trnW trnW 64441 64514 -1 74 LSC 0.000000 0 0 25 39 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_066 igs trnW|trnP trnW-trnP 64515 64653 0 139 LSC 0.007525 5 1 99 130 no 0.100000 6 0.500000 0.007578 0.992806 36.600000 trnP tRNA trnP trnP 64654 64728 -1 75 LSC 0.000000 0 0 28 55 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_067 igs trnP|psaJ trnP-psaJ 64729 65152 0 424 LSC 0.013053 21 153 103 68 no 0.500000 19 0.789474 0.014967 0.988208 52.000000 psaJ gene psaJ psaJ 65153 65281 1 129 LSC 0.005435 2 0 49 12 no 0.033333 3 0.333333 0.005435 1.000000 24.700000 IGS_068 igs psaJ|rpl33 psaJ-rpl33 65282 65737 0 456 LSC 0.019828 42 5 30 79 no 0.466667 20 0.700000 0.019842 1.000000 54.800000 rpl33 gene rpl33 rpl33 65738 65938 1 201 LSC 0.007091 7 0 35 6 no 0.133333 7 0.571429 0.007091 1.000000 29.200000 IGS_069 igs rpl33|rps18 rpl33-rps18 65939 66177 0 239 LSC 0.015678 14 3 69 37 no 0.233333 15 0.466667 0.015713 1.000000 41.800000 rps18 gene rps18 rps18 66178 66690 1 513 LSC 0.005113 10 21 64 121 no 0.200000 11 0.545455 0.005054 1.000000 41.500000 IGS_070 igs rps18|rpl20 rps18-rpl20 66691 66848 0 158 LSC 0.008904 8 2 126 96 no 0.233333 12 0.583333 0.008881 1.000000 42.200000 rpl20 gene rpl20 rpl20 66849 67208 -1 360 LSC 0.004368 8 0 3 31 no 0.133333 8 0.500000 0.004368 1.000000 27.500000 IGS_071 igs rpl20|rps12 rpl20-rps12 67209 67912 0 704 LSC 0.006996 21 24 219 136 no 0.433333 19 0.684211 0.006941 1.000000 54.400000 rps12_part1 gene rps12 rps12 67913 68026 -1 114 LSC 0.003347 3 0 43 22 no 0.033333 4 0.250000 0.003347 1.000000 25.800000 IGS_072 igs rps12|clpP rps12-clpP 68027 68169 0 143 LSC 0.009328 9 6 157 45 no 0.300000 13 0.692308 0.009397 0.965035 43.600000 clpP gene clpP clpP 68170 68820 -1 651 LSC 0.006240 14 0 79 81 no 0.166667 11 0.454545 0.006240 1.000000 39.500000 IGS_073 igs clpP|psbB clpP-psbB 68821 69335 0 515 LSC 0.009378 19 0 143 77 no 0.266667 15 0.533333 0.009378 1.000000 42.800000 psbB gene psbB psbB 69336 70862 1 1527 LSC 0.005090 32 0 232 43 no 0.400000 18 0.666667 0.005090 1.000000 40.600000 IGS_074 igs psbB|psbT psbB-psbT 70863 71025 0 163 LSC 0.007193 4 0 117 134 no 0.033333 4 0.250000 0.007193 1.000000 34.500000 psbT gene psbT psbT 71026 71133 1 108 LSC 0.001809 2 0 6 26 no 0.033333 3 0.333333 0.001809 1.000000 23.000000 IGS_075 igs psbT|psbN psbT-psbN 71134 71182 0 49 LSC 0.022895 3 0 114 156 no 0.000000 3 0.000000 0.022895 1.000000 45.300000 psbN gene psbN psbN 71183 71314 -1 132 LSC 0.000000 0 0 21 24 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 IGS_076 igs psbN|psbH psbN-psbH 71315 71417 0 103 LSC 0.008928 2 0 153 35 no 0.000000 3 0.000000 0.008928 1.000000 27.800000 psbH gene psbH psbH 71418 71639 1 222 LSC 0.002092 3 0 67 17 no 0.066667 4 0.500000 0.002092 1.000000 23.900000 IGS_077 igs psbH|petB psbH-petB 71640 72510 0 871 LSC 0.009088 39 44 186 2 no 0.733333 24 0.916667 0.008819 1.000000 54.800000 petB gene petB petB 72511 73209 1 699 LSC 0.004548 12 5 35 12 no 0.233333 13 0.538462 0.004551 1.000000 35.400000 IGS_078 igs petB|petD petB-petD 73210 73396 0 187 LSC 0.009527 10 0 108 38 no 0.300000 12 0.750000 0.009527 1.000000 38.200000 petD gene petD petD 73397 74622 1 1226 LSC 0.004806 33 15 101 34 no 0.566667 21 0.809524 0.004826 0.999184 45.200000 IGS_079 igs petD|rpoA petD-rpoA 74623 74833 0 211 LSC 0.010525 13 19 69 69 no 0.300000 16 0.562500 0.010782 1.000000 47.800000 rpoA gene rpoA rpoA 74834 75853 -1 1020 LSC 0.009597 37 6 121 3 no 0.366667 17 0.647059 0.009600 1.000000 41.700000 IGS_080 igs rpoA|rps11 rpoA-rps11 75854 75917 0 64 LSC 0.004777 2 0 9 24 no 0.033333 3 0.333333 0.004777 1.000000 26.100000 rps11 gene rps11 rps11 75918 76349 -1 432 LSC 0.008791 13 0 60 4 no 0.100000 9 0.333333 0.008791 1.000000 31.400000 IGS_081 igs rps11|rpl36 rps11-rpl36 76350 76536 0 187 LSC 0.029258 17 79 50 39 no 0.500000 21 0.714286 0.029288 0.973262 60.600000 rpl36 gene rpl36 rpl36 76537 76650 -1 114 LSC 0.007038 2 0 6 48 no 0.000000 3 0.000000 0.007038 1.000000 24.600000 IGS_082 igs rpl36|infA rpl36-infA 76651 76756 0 106 LSC 0.021080 6 4 17 18 no 0.133333 7 0.571429 0.020788 1.000000 43.800000 infA gene infA infA 76757 77098 -1 342 LSC 0.008368 13 18 6 43 no 0.200000 11 0.545455 0.007862 1.000000 38.300000 IGS_083 igs infA|rps8 infA-rps8 77099 77208 0 110 LSC 0.044869 16 0 41 70 no 0.166667 8 0.625000 0.044869 1.000000 57.600000 rps8 gene rps8 rps8 77209 77619 -1 411 LSC 0.005146 7 0 32 32 no 0.100000 6 0.500000 0.005146 1.000000 29.800000 IGS_084 igs rps8|rpl14 rps8-rpl14 77620 77752 0 133 LSC 0.042192 16 0 47 51 no 0.333333 14 0.714286 0.042192 1.000000 60.000000 rpl14 gene rpl14 rpl14 77753 78124 -1 372 LSC 0.009492 12 0 19 77 no 0.166667 10 0.500000 0.009492 1.000000 33.100000 IGS_085 igs rpl14|rpl16 rpl14-rpl16 78125 78253 0 129 LSC 0.007433 5 17 86 144 no 0.166667 8 0.625000 0.005783 0.868217 37.500000 rpl16 gene rpl16 rpl16 78254 79684 -1 1431 LSC 0.012392 68 112 5 23 no 0.900000 28 0.964286 0.011993 0.999301 59.700000 IGS_086 igs rpl16|rps3 rpl16-rps3 79685 79827 0 143 LSC 0.018841 12 29 33 114 no 0.300000 14 0.642857 0.019149 1.000000 51.800000 rps3 gene rps3 rps3 79828 80547 -1 720 LSC 0.010501 29 0 13 26 no 0.466667 19 0.736842 0.010501 1.000000 44.500000 IGS_087 igs rps3|rpl22 rps3-rpl22 80548 80603 0 56 LSC 0.031281 5 0 89 6 no 0.066667 5 0.400000 0.031281 1.000000 45.700000 rpl22 gene rpl22 rpl22 80604 81053 -1 450 LSC 0.007934 14 0 7 27 no 0.266667 15 0.533333 0.007934 1.000000 34.900000 IGS_088 igs rpl22|rps19 rpl22-rps19 81054 81137 0 84 IRb 0.044714 17 8 55 147 no 0.133333 9 0.444444 0.044382 1.000000 64.000000 rps19 gene rps19 rps19 81138 81419 -1 282 IRb 0.003473 4 0 27 19 no 0.066667 5 0.400000 0.003473 1.000000 24.800000 IGS_089 igs rps19|trnH rps19-trnH 81420 81567 0 148 IRb 0.004895 3 17 59 110 no 0.066667 4 0.500000 0.004642 0.885135 32.100000 trnH tRNA trnH trnH 81568 81642 1 75 IRb 0.000000 0 0 128 35 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_090 igs trnH|rpl2 trnH-rpl2 81643 81697 0 55 IRb 0.018600 2 0 203 42 no 0.033333 3 0.333333 0.018600 1.000000 35.400000 rpl2 gene rpl2 rpl2 81698 83182 -1 1485 IRb 0.000916 7 0 12 117 no 0.166667 7 0.714286 0.000916 1.000000 30.000000 IGS_091 igs rpl2|rpl23 rpl2-rpl23 83183 83200 0 18 IRb 0.000000 0 0 161 99 no 0.000000 1 0.000000 NA 1.000000 26.200000 rpl23 gene rpl23 rpl23 83201 83482 -1 282 IRb 0.003318 3 0 179 279 no 0.033333 3 0.333333 0.003318 1.000000 35.600000 IGS_092 igs rpl23|trnI rpl23-trnI 83483 83656 0 174 IRb 0.000000 0 0 143 105 no 0.000000 1 0.000000 0.000000 1.000000 26.600000 IGS_093 igs trnI|trnL trnI-trnL 83730 85721 0 1992 IRb 0.002761 21 167 300 249 no 0.366667 16 0.687500 0.002773 0.996988 54.500000 IGS_094 igs trnL|ndhB trnL-ndhB 85803 86374 0 572 IRb 0.001625 5 12 101 209 no 0.066667 7 0.285714 0.001423 1.000000 37.600000 ndhB gene ndhB ndhB 86375 88619 -1 2245 IRb 0.001463 10 0 293 300 no 0.166667 9 0.555556 0.001463 1.000000 42.800000 IGS_095 igs ndhB|rps7 ndhB-rps7 88620 88918 0 299 IRb 0.000223 1 7 300 300 no 0.033333 4 0.250000 0.000225 1.000000 37.500000 rps7 gene rps7 rps7 88919 89389 -1 471 IRb 0.001220 2 0 300 300 no 0.033333 3 0.333333 0.001220 1.000000 39.000000 IGS_096 igs rps7|rps12 rps7-rps12 89390 89446 0 57 IRb 0.000000 0 0 77 246 no 0.000000 1 0.000000 0.000000 1.000000 24.500000 rps12_part2 gene rps12 rps12 89447 90229 -1 783 IRb 0.001166 3 0 134 300 no 0.033333 4 0.250000 0.001166 1.000000 36.700000 IGS_097 igs rps12|trnV rps12-trnV 90230 91971 0 1742 IRb 0.001784 18 241 300 110 no 0.466667 19 0.736842 0.001796 0.999426 49.700000 IGS_098 igs trnV|rrn16 trnV-rrn16 92044 92272 0 229 IRb 0.004437 3 0 77 300 no 0.033333 4 0.250000 0.004437 1.000000 28.800000 rrn16 rRNA rrn16 rrn16 92273 93764 1 1492 IRb 0.000000 0 0 175 195 no 0.000000 1 0.000000 0.000000 1.000000 38.100000 IGS_099 igs rrn16|trnI rrn16-trnI 93765 94072 0 308 IRb 0.006031 5 1 300 173 no 0.066667 5 0.400000 0.006032 1.000000 38.300000 trnI_part1 tRNA trnI trnI 94073 94109 1 37 IRb 0.000000 0 0 16 136 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 trnI_part2 tRNA trnI trnI 94916 94950 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_102 igs trnI|trnA trnI-trnA 94951 95015 0 65 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 95016 95053 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 95865 95899 1 35 IRb 0.000000 0 0 34 49 no 0.000000 1 0.000000 0.000000 1.000000 21.300000 IGS_105 igs trnA|rrn23 trnA-rrn23 95900 96044 0 145 IRb 0.004011 2 0 69 300 no 0.033333 3 0.333333 0.004011 1.000000 28.100000 rrn23 rRNA rrn23 rrn23 96045 98932 1 2888 IRb 0.000540 7 0 95 20 no 0.066667 7 0.285714 0.000540 1.000000 25.400000 IGS_106 igs rrn23|rrn4.5 rrn23-rrn4.5 98933 99027 0 95 IRb 0.005420 1 0 300 17 no 0.000000 2 0.000000 0.005420 1.000000 23.800000 rrn4.5 rRNA rrn4.5 rrn4.5 99028 99122 1 95 IRb 0.002517 1 0 74 115 no 0.000000 2 0.000000 0.002517 1.000000 26.700000 IGS_107 igs rrn4.5|rrn5 rrn4.5-rrn5 99123 99349 0 227 IRb 0.002319 3 1 77 297 no 0.066667 5 0.400000 0.002320 1.000000 29.000000 rrn5 rRNA rrn5 rrn5 99350 99470 1 121 IRb 0.000000 0 0 111 176 no 0.000000 1 0.000000 0.000000 1.000000 27.100000 IGS_108 igs rrn5|trnR rrn5-trnR 99471 99699 0 229 IRb 0.002299 3 0 232 300 no 0.033333 4 0.250000 0.002299 1.000000 37.000000 trnR tRNA trnR trnR 99700 99773 1 74 IRb 0.000000 0 0 52 300 no 0.000000 1 0.000000 0.000000 1.000000 22.700000 IGS_109 igs trnR|trnN trnR-trnN 99774 100035 0 262 IRb 0.001018 4 0 126 94 no 0.133333 5 0.800000 0.001018 1.000000 30.700000 trnN tRNA trnN trnN 100036 100107 -1 72 IRb 0.000000 0 0 300 22 no 0.000000 1 0.000000 0.000000 1.000000 20.400000 IGS_110 igs trnN|rps15 trnN-rps15 100108 101708 0 1601 IRb 0.005654 37 41 300 26 no 0.600000 22 0.818182 0.005749 0.981262 46.100000 rps15 gene rps15 rps15 101709 101945 1 237 IRb 0.006179 7 0 5 11 no 0.133333 8 0.500000 0.006179 1.000000 28.100000 IGS_111 igs rps15|ndhF rps15-ndhF 101946 102383 0 438 IRb 0.022457 54 191 144 4 no 0.600000 22 0.818182 0.021663 0.986301 60.900000 ndhF gene ndhF ndhF 102384 104603 -1 2220 SSC 0.014409 127 0 8 8 yes 0.800000 27 0.888889 0.014409 1.000000 52.700000 IGS_112 igs ndhF|rpl32 ndhF-rpl32 104604 105425 0 822 SSC 0.026799 97 161 35 28 yes 1.000000 30 1.000000 0.027597 0.952555 74.800000 rpl32 gene rpl32 rpl32 105426 105617 1 192 SSC 0.010680 10 0 49 3 no 0.200000 10 0.600000 0.010680 1.000000 34.000000 IGS_113 igs rpl32|trnL rpl32-trnL 105618 106259 0 642 SSC 0.029126 74 65 14 131 yes 0.866667 28 0.928571 0.029171 0.993769 73.700000 IGS_114 igs trnL|ccsA trnL-ccsA 106340 106416 0 77 SSC 0.004717 2 0 149 131 no 0.066667 4 0.500000 0.004717 1.000000 35.200000 ccsA gene ccsA ccsA 106417 107376 1 960 SSC 0.011228 43 0 25 37 no 0.633333 22 0.863636 0.011228 1.000000 49.400000 IGS_115 igs ccsA|ndhD ccsA-ndhD 107377 107560 0 184 SSC 0.016913 16 32 111 50 no 0.133333 9 0.444444 0.016900 0.978261 48.200000 ndhD gene ndhD ndhD 107561 109063 -1 1503 SSC 0.006529 46 0 27 91 no 0.666667 24 0.833333 0.006529 1.000000 46.300000 IGS_116 igs ndhD|psaC ndhD-psaC 109064 109182 0 119 SSC 0.007727 2 0 38 24 no 0.000000 3 0.000000 0.007727 1.000000 26.100000 psaC gene psaC psaC 109183 109428 -1 246 SSC 0.008728 7 0 19 147 no 0.166667 10 0.500000 0.008728 1.000000 30.800000 IGS_117 igs psaC|ndhE psaC-ndhE 109429 109919 0 491 SSC 0.022267 43 79 122 75 no 0.533333 21 0.761905 0.022309 0.916497 61.800000 ndhE gene ndhE ndhE 109920 110225 -1 306 SSC 0.004177 6 0 6 125 no 0.066667 6 0.333333 0.004177 1.000000 24.900000 IGS_118 igs ndhE|ndhG ndhE-ndhG 110226 110416 0 191 SSC 0.010820 9 0 14 66 no 0.166667 9 0.555556 0.010820 1.000000 33.700000 ndhG gene ndhG ndhG 110417 110947 -1 531 SSC 0.008771 17 0 28 13 no 0.366667 17 0.647059 0.008771 1.000000 39.400000 IGS_119 igs ndhG|ndhI ndhG-ndhI 110948 111203 0 256 SSC 0.033124 34 19 14 54 no 0.433333 18 0.722222 0.032930 1.000000 61.500000 ndhI gene ndhI ndhI 111204 111746 -1 543 SSC 0.006719 20 0 27 45 no 0.300000 14 0.642857 0.006719 1.000000 39.100000 IGS_120 igs ndhI|ndhA ndhI-ndhA 111747 111839 0 93 SSC 0.008973 4 0 68 19 no 0.066667 5 0.400000 0.008973 1.000000 30.800000 ndhA gene ndhA ndhA 111840 113911 -1 2072 SSC 0.012620 128 1 47 162 no 0.800000 27 0.888889 0.012624 1.000000 55.800000 IGS_121 igs ndhA|ndhH ndhA-ndhH 113912 113912 0 1 SSC 0.000000 0 0 17 161 no 0.000000 1 0.000000 NA 1.000000 20.000000 ndhH gene ndhH ndhH 113913 115094 -1 1182 SSC 0.006366 38 0 18 90 no 0.600000 22 0.818182 0.006366 1.000000 44.500000 IGS_122 igs ndhH|rps15 ndhH-rps15 115095 115232 0 138 IRa 0.007196 3 0 26 144 no 0.000000 2 0.000000 0.007196 1.000000 26.700000 rps15 gene rps15 rps15 115233 115469 -1 237 IRa 0.006179 7 0 11 5 no 0.133333 8 0.500000 0.006179 1.000000 28.100000 IGS_123 igs rps15|trnN rps15-trnN 115470 117070 0 1601 IRa 0.005654 37 41 26 300 no 0.600000 22 0.818182 0.005749 0.981262 46.100000 trnN tRNA trnN trnN 117071 117142 1 72 IRa 0.000000 0 0 22 300 no 0.000000 1 0.000000 0.000000 1.000000 20.400000 IGS_124 igs trnN|trnR trnN-trnR 117143 117404 0 262 IRa 0.001018 4 0 94 126 no 0.133333 5 0.800000 0.001018 1.000000 30.700000 trnR tRNA trnR trnR 117405 117481 -1 77 IRa 0.000000 0 0 300 49 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_125 igs trnR|rrn5 trnR-rrn5 117482 117707 0 226 IRa 0.002329 3 0 300 232 no 0.033333 4 0.250000 0.002329 1.000000 37.100000 rrn5 rRNA rrn5 rrn5 117708 117828 -1 121 IRa 0.000000 0 0 176 111 no 0.000000 1 0.000000 0.000000 1.000000 27.100000 IGS_126 igs rrn5|rrn4.5 rrn5-rrn4.5 117829 118055 0 227 IRa 0.002319 3 1 297 77 no 0.066667 5 0.400000 0.002320 1.000000 29.000000 rrn4.5 rRNA rrn4.5 rrn4.5 118056 118150 -1 95 IRa 0.002517 1 0 115 74 no 0.000000 2 0.000000 0.002517 1.000000 26.700000 IGS_127 igs rrn4.5|rrn23 rrn4.5-rrn23 118151 118245 0 95 IRa 0.005420 1 0 17 300 no 0.000000 2 0.000000 0.005420 1.000000 23.800000 rrn23 rRNA rrn23 rrn23 118246 121133 -1 2888 IRa 0.000540 7 0 20 95 no 0.066667 7 0.285714 0.000540 1.000000 25.400000 IGS_128 igs rrn23|trnA rrn23-trnA 121134 121278 0 145 IRa 0.004011 2 0 300 69 no 0.033333 3 0.333333 0.004011 1.000000 28.100000 trnA_part2 tRNA trnA trnA 121279 121313 -1 35 IRa 0.000000 0 0 49 34 no 0.000000 1 0.000000 0.000000 1.000000 21.300000 trnA_part1 tRNA trnA trnA 122125 122162 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_131 igs trnA|trnI trnA-trnI 122163 122227 0 65 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 122228 122262 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 123069 123105 -1 37 IRa 0.000000 0 0 136 16 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_134 igs trnI|rrn16 trnI-rrn16 123106 123413 0 308 IRa 0.006031 5 1 173 300 no 0.066667 5 0.400000 0.006032 1.000000 38.300000 rrn16 rRNA rrn16 rrn16 123414 124904 -1 1491 IRa 0.000000 0 0 195 176 no 0.000000 1 0.000000 0.000000 1.000000 38.200000 IGS_135 igs rrn16|trnV rrn16-trnV 124905 125134 0 230 IRa 0.004418 3 0 300 77 no 0.033333 4 0.250000 0.004418 1.000000 28.800000 IGS_136 igs trnV|rps12 trnV-rps12 125207 126936 0 1730 IRa 0.001797 18 241 110 300 no 0.466667 19 0.736842 0.001809 0.999422 49.700000 rps12_part2 gene rps12 rps12 126937 127731 1 795 IRa 0.001148 3 0 300 134 no 0.033333 4 0.250000 0.001148 1.000000 36.700000 IGS_137 igs rps12|rps7 rps12-rps7 127732 127788 0 57 IRa 0.000000 0 0 246 77 no 0.000000 1 0.000000 0.000000 1.000000 24.500000 rps7 gene rps7 rps7 127789 128259 1 471 IRa 0.001220 2 0 300 300 no 0.033333 3 0.333333 0.001220 1.000000 39.000000 IGS_138 igs rps7|ndhB rps7-ndhB 128260 128558 0 299 IRa 0.000223 1 6 300 300 no 0.033333 4 0.250000 0.000225 1.000000 37.100000 ndhB gene ndhB ndhB 128559 130803 1 2245 IRa 0.001463 10 0 300 293 no 0.166667 9 0.555556 0.001463 1.000000 42.800000 IGS_139 igs ndhB|trnL ndhB-trnL 130804 131375 0 572 IRa 0.001539 5 12 209 101 no 0.066667 7 0.285714 0.001546 1.000000 37.500000 IGS_140 igs trnL|trnI trnL-trnI 131457 133448 0 1992 IRa 0.002761 21 167 249 300 no 0.366667 16 0.687500 0.002773 0.996988 54.500000 IGS_141 igs trnI|rpl23 trnI-rpl23 133522 133695 0 174 IRa 0.000000 0 0 105 143 no 0.000000 1 0.000000 0.000000 1.000000 26.600000 rpl23 gene rpl23 rpl23 133696 133977 1 282 IRa 0.003318 3 0 279 179 no 0.033333 3 0.333333 0.003318 1.000000 35.600000 IGS_142 igs rpl23|rpl2 rpl23-rpl2 133978 133995 0 18 IRa 0.000000 0 0 99 161 no 0.000000 1 0.000000 NA 1.000000 26.200000 rpl2 gene rpl2 rpl2 133996 135480 1 1485 IRa 0.000916 7 0 117 12 no 0.166667 7 0.714286 0.000916 1.000000 30.000000 IGS_143 igs rpl2|trnH rpl2-trnH 135481 135532 0 52 IRa 0.019673 2 0 42 206 no 0.033333 3 0.333333 0.019673 1.000000 36.200000 trnH tRNA trnH trnH 135533 135610 -1 78 IRa 0.000000 0 0 32 128 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_144 igs trnH|rps19 trnH-rps19 135611 135758 0 148 IRa 0.004895 3 17 110 59 no 0.066667 4 0.500000 0.004642 0.885135 32.100000 rps19 gene rps19 rps19 135759 136040 1 282 IRa 0.003473 4 0 19 27 no 0.066667 5 0.400000 0.003473 1.000000 24.800000 IGS_145 igs rps19|psbA rps19-psbA 136041 84 0 147 LSC 0.023921 16 32 147 102 no 0.333333 15 0.666667 0.024531 0.836735 55.600000