Hotspot

clpP

LSC · 69433-71312 · 1880 bp

Back to Gerbera

Pi 0.0016

MarkerSeek score 58.90

Primer available yes

Label clpP

Feature Metadata

label_name: clpP
feature_type: gene
region: LSC
length_bp: 1880
variable_sites: 3
pi: 0.0016
unique_haplotype_count: 2
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 58.90

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
clpP_p1	CACGAATTGACGCCAAATCC	GCCTTTGTTACGTTTCCACA	50.0	45.0	58.1	56.9	1971-1972 bp	1.0	70.2
clpP_p2	CTCGGCAGGGGTAATTTCAA	GCCTTTGTTACGTTTCCACA	50.0	45.0	57.9	56.9	1993-1994 bp	1.0	70.1
clpP_p3	AACTCGGCAGGGGTAATTTC	GCCTTTGTTACGTTTCCACA	50.0	45.0	57.9	56.9	1995-1996 bp	1.0	70.1
clpP_p4	CGAATTGACGCCAAATCCAG	GCCTTTGTTACGTTTCCACA	50.0	45.0	57.8	56.9	1969-1970 bp	1.0	69.6
clpP_p5	CACGAATTGACGCCAAATCC	AGCCTTTGTTACGTTTCCACA	50.0	42.9	58.1	58.4	1972-1973 bp	1.0	68.5