primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score tRNA-Lys(UUU)-rps16_p1 tRNA-Lys(UUU)-rps16 1 CCTTTCAGGATCAGTCGTGG AAAGGAGCTCAACCCACAAG 20 20 55.0 50.0 58.0 58.0 0.0 17.2 0.028853 4383 5049 860-950 1.000000 89.7 tRNA-Lys(UUU)-rps16_p2 tRNA-Lys(UUU)-rps16 2 CCTTTCAGGATCAGTCGTGG AGCTCAACCCACAAGAACTG 20 20 55.0 50.0 58.0 58.0 0.0 0.0 0.042864 4383 5049 855-945 1.000000 89.6 tRNA-Lys(UUU)-rps16_p3 tRNA-Lys(UUU)-rps16 3 TAAGAACAGAAGCTCGTCGC AAAGGAGCTCAACCCACAAG 20 20 50.0 50.0 58.0 58.0 0.0 17.2 0.034576 4383 5049 1069-1169 1.000000 89.2 tRNA-Lys(UUU)-rps16_p4 tRNA-Lys(UUU)-rps16 4 TAAGAACAGAAGCTCGTCGC AGCTCAACCCACAAGAACTG 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.048586 4383 5049 1064-1164 1.000000 89.2 tRNA-Lys(UUU)-rps16_p5 tRNA-Lys(UUU)-rps16 5 CCTTTCAGGATCAGTCGTGG AGAGATCTTCGGAGAGTGGG 20 20 55.0 55.0 58.0 57.9 0.0 0.0 0.081634 4383 5049 944-1034 1.000000 89.1 tRNA-Ser(GCU)-tRNA-Ser (CGA)_p1 tRNA-Ser(GCU)-tRNA-Ser (CGA) 1 AGTCCACTCAGCCATCTCTC AGGACGAATCACACTTTTACCA 20 22 55.0 40.9 58.5 57.7 0.0 0.0 2.861821 9078 9956 937-1629 1.000000 67.4 tRNA-Ser(GCU)-tRNA-Ser (CGA)_p2 tRNA-Ser(GCU)-tRNA-Ser (CGA) 2 AGTCCACTCAGCCATCTCTC GGACGAATCACACTTTTACCAC 20 22 55.0 45.5 58.5 57.6 0.0 0.0 2.915998 9078 9956 936-1628 1.000000 66.9 tRNA-Ser(GCU)-tRNA-Ser (CGA)_p3 tRNA-Ser(GCU)-tRNA-Ser (CGA) 3 TAGTCCACTCAGCCATCTCT AGGACGAATCACACTTTTACCA 20 22 50.0 40.9 57.2 57.7 0.0 0.0 3.182495 9078 9956 938-1630 1.000000 64.8 tRNA-Ser(GCU)-tRNA-Ser (CGA)_p4 tRNA-Ser(GCU)-tRNA-Ser (CGA) 4 TAGTCCACTCAGCCATCTCT GGACGAATCACACTTTTACCAC 20 22 50.0 45.5 57.2 57.6 0.0 0.0 3.236672 9078 9956 937-1629 1.000000 64.4 tRNA-Ser(GCU)-tRNA-Ser (CGA)_p5 tRNA-Ser(GCU)-tRNA-Ser (CGA) 5 AGTCCACTCAGCCATCTCTC GGACGAATCACACTTTTACCA 20 21 55.0 42.9 58.5 56.2 0.0 0.0 3.319052 9078 9956 936-1628 1.000000 63.7 tRNA-Cys(GCA)-petN_p1 tRNA-Cys(GCA)-petN 1 AGTTCAAATCTGGGTGTCGC CTCCTCCCCCATACTACGAG 20 20 50.0 60.0 58.5 58.1 0.0 0.0 0.563826 29440 30406 1021-1069 1.000000 85.8 tRNA-Cys(GCA)-petN_p2 tRNA-Cys(GCA)-petN 2 AGTTCAAATCTGGGTGTCGC AGCCCAAGCGAGACTTACTA 20 20 50.0 50.0 58.5 58.2 0.0 0.0 0.627590 29440 30406 968-1016 1.000000 85.6 tRNA-Cys(GCA)-petN_p3 tRNA-Cys(GCA)-petN 3 GGGGGACTGCAAATCCTTTA CTCCTCCCCCATACTACGAG 20 20 50.0 60.0 57.5 58.1 14.7 0.0 0.612688 29440 30406 1046-1094 1.000000 85.2 tRNA-Cys(GCA)-petN_p4 tRNA-Cys(GCA)-petN 4 GGGGGACTGCAAATCCTTTA AGCCCAAGCGAGACTTACTA 20 20 50.0 50.0 57.5 58.2 14.7 0.0 0.676453 29440 30406 993-1041 1.000000 85.0 tRNA-Cys(GCA)-petN_p5 tRNA-Cys(GCA)-petN 5 AGTTCAAATCTGGGTGTCGC TCTAAAGTCCACTCCTCCCC 20 20 50.0 55.0 58.5 57.8 0.0 0.0 0.725551 29440 30406 1032-1080 1.000000 84.4 tRNA-Glu(UUC)-tRNA-Thr(GGU)_p1 tRNA-Glu(UUC)-tRNA-Thr(GGU) 1 AGATGTCCTGAACCGCTAGA CCATGGCGTTACTCTACCAC 20 20 50.0 55.0 57.9 58.1 0.0 0.0 0.209464 33497 34527 785-1095 1.000000 90.3 tRNA-Glu(UUC)-tRNA-Thr(GGU)_p2 tRNA-Glu(UUC)-tRNA-Thr(GGU) 2 AGATGTCCTGAACCGCTAGA TGGCGTTACTCTACCACTGA 20 20 50.0 50.0 57.9 58.1 0.0 0.0 0.231619 33497 34527 782-1092 1.000000 90.1 tRNA-Glu(UUC)-tRNA-Thr(GGU)_p3 tRNA-Glu(UUC)-tRNA-Thr(GGU) 3 GATGTCCTGAACCGCTAGAC CCATGGCGTTACTCTACCAC 20 20 55.0 55.0 57.8 58.1 0.0 0.0 0.275420 33497 34527 784-1094 1.000000 89.8 tRNA-Glu(UUC)-tRNA-Thr(GGU)_p4 tRNA-Glu(UUC)-tRNA-Thr(GGU) 4 GATGTCCTGAACCGCTAGAC TGGCGTTACTCTACCACTGA 20 20 55.0 50.0 57.8 58.1 0.0 0.0 0.297575 33497 34527 781-1091 1.000000 89.6 tRNA-Glu(UUC)-tRNA-Thr(GGU)_p5 tRNA-Glu(UUC)-tRNA-Thr(GGU) 5 GAGATGTCCTGAACCGCTAG CCATGGCGTTACTCTACCAC 20 20 55.0 55.0 57.5 58.1 0.0 0.0 0.564576 33497 34527 786-1096 1.000000 87.5 ycf3-tRNA-Ser(GGA)_p1 ycf3-tRNA-Ser(GGA) 1 ACACGACAGAAGGCATTGTT CCCTCGGTAAACAAAAGCCT 20 20 45.0 50.0 58.0 58.1 0.0 0.0 0.127044 47358 48236 1236-1253 1.000000 89.8 ycf3-tRNA-Ser(GGA)_p2 ycf3-tRNA-Ser(GGA) 2 GTCATCCTTCCTGCAAGAGG CCCTCGGTAAACAAAAGCCT 20 20 55.0 50.0 58.0 58.1 3.8 0.0 0.129893 47358 48236 1643-1656 1.000000 88.1 ycf3-tRNA-Ser(GGA)_p3 ycf3-tRNA-Ser(GGA) 3 TTTCTTTGTCCCTAACGCCC CCCTCGGTAAACAAAAGCCT 20 20 50.0 50.0 58.1 58.1 0.0 0.0 0.194117 47358 48236 1568-1589 1.000000 87.4 ycf3-tRNA-Ser(GGA)_p4 ycf3-tRNA-Ser(GGA) 4 ACACGACAGAAGGCATTGTT GGACAATTTTGCCCGCTTTT 20 20 45.0 45.0 58.0 58.1 0.0 0.0 0.155045 47358 48236 1558-1558 0.500000 58.8 ycf3-tRNA-Ser(GGA)_p5 ycf3-tRNA-Ser(GGA) 5 GTCATCCTTCCTGCAAGAGG GGACAATTTTGCCCGCTTTT 20 20 55.0 45.0 58.0 58.1 3.8 0.0 0.157893 47358 48236 1965-1965 0.500000 58.7 ndhC-tRNA-Val(UAC)_p1 ndhC-tRNA-Val(UAC) 1 AGAGAAGCGGCCATAAACTG GAGCAAATGGAGCCATCTCA 20 20 50.0 50.0 58.0 58.0 2.2 1.9 0.078282 54328 55468 1582-1881 1.000000 91.4 ndhC-tRNA-Val(UAC)_p2 ndhC-tRNA-Val(UAC) 2 AGAGAAGCGGCCATAAACTG TCAGAGCAAATGGAGCCATC 20 20 50.0 50.0 58.0 58.0 2.2 1.9 0.078282 54328 55468 1585-1884 1.000000 91.4 ndhC-tRNA-Val(UAC)_p3 ndhC-tRNA-Val(UAC) 3 AGAGAAGCGGCCATAAACTG CAGAGCAAATGGAGCCATCT 20 20 50.0 50.0 58.0 57.9 2.2 1.9 0.084070 54328 55468 1584-1883 1.000000 91.3 ndhC-tRNA-Val(UAC)_p4 ndhC-tRNA-Val(UAC) 4 ACTAGAGAGCTTCTCCGGTC GAGCAAATGGAGCCATCTCA 20 20 55.0 50.0 58.0 58.0 0.0 1.9 0.095446 54328 55468 1177-1473 1.000000 91.2 ndhC-tRNA-Val(UAC)_p5 ndhC-tRNA-Val(UAC) 5 ACTAGAGAGCTTCTCCGGTC TCAGAGCAAATGGAGCCATC 20 20 55.0 50.0 58.0 58.0 0.0 1.9 0.095446 54328 55468 1180-1476 1.000000 91.2 atpB-rbcL_p1 atpB-rbcL 1 AATTCGTCCGAGAGTTGCTC ATCCTCCAGACGTAGAGCTC 20 20 50.0 55.0 58.0 58.0 0.0 5.3 0.026671 58445 59241 1479-1538 1.000000 91.0 atpB-rbcL_p2 atpB-rbcL 2 AATTCGTCCGAGAGTTGCTC GGGGACGACCATACTTGTTC 20 20 50.0 55.0 58.0 58.0 0.0 6.2 0.022279 58445 59241 1573-1632 1.000000 90.8 atpB-rbcL_p3 atpB-rbcL 3 AATTCGTCCGAGAGTTGCTC CTACCGTAGTTTTTCGCGGA 20 20 50.0 50.0 58.0 58.0 0.0 6.1 0.021077 58445 59241 1628-1687 1.000000 90.4 atpB-rbcL_p4 atpB-rbcL 4 AATTCGTCCGAGAGTTGCTC CGGTCTCTCCAACGCATAAA 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.006913 58445 59241 1718-1777 1.000000 90.0 atpB-rbcL_p5 atpB-rbcL 5 TTTTCCTCCACGGCGATAAG CGGTCTCTCCAACGCATAAA 20 20 50.0 50.0 58.0 58.0 16.6 0.0 0.023125 58445 59241 1889-1948 1.000000 89.0 accD_p1 accD 1 TCAGACCCTAGCTCAAACCA TGGTCACGATGAATTACTGCT 20 21 50.0 42.9 58.0 57.4 0.0 0.0 1.634216 61451 62923 2004-2004 0.500000 46.9 accD_p2 accD 2 TTTTCGTTCCGTGTTCCCAT TGGTCACGATGAATTACTGCT 20 21 45.0 42.9 58.0 57.4 0.0 0.0 1.639948 61451 62923 1948-1948 0.500000 46.9 accD_p3 accD 3 GACCCTAGCTCAAACCAAGG TGGTCACGATGAATTACTGCT 20 21 55.0 42.9 57.9 57.4 0.0 0.0 1.725383 61451 62923 2001-2001 0.500000 46.2 accD_p4 accD 4 AATGATACCCCGGATTCCCA TGGTCACGATGAATTACTGCT 20 21 50.0 42.9 58.2 57.4 0.7 0.0 1.782248 61451 62923 1751-1751 0.500000 45.7 accD_p5 accD 5 ACCAAGGGAAGGTGTCTTCT TGGTCACGATGAATTACTGCT 20 21 50.0 42.9 58.2 57.4 6.2 0.0 1.788952 61451 62923 1988-1988 0.500000 45.7 accD-psaI_p1 accD-psaI 1 TCACAAGCGGCTGAGTATTC CATTCGACTGGAGTTGGGAG 20 20 50.0 55.0 58.0 58.0 1.8 0.0 0.025881 62924 63992 1663-1663 0.500000 59.8 accD-psaI_p2 accD-psaI 2 TCACAAGCGGCTGAGTATTC CCATTGCAATTGCCGGAAAT 20 20 50.0 45.0 58.0 58.0 1.8 26.9 0.037148 62924 63992 1259-1259 0.500000 59.7 accD-psaI_p3 accD-psaI 3 TCACAAGCGGCTGAGTATTC CCGCTTTTGACCAGAGCTAT 20 20 50.0 50.0 58.0 58.0 1.8 0.0 0.039983 62924 63992 1515-1515 0.500000 59.7 accD-psaI_p4 accD-psaI 4 TCACAAGCGGCTGAGTATTC TTGTTTTTCGAGACCCCGTT 20 20 50.0 45.0 58.0 58.0 1.8 0.0 0.051396 62924 63992 1740-1740 0.500000 59.6 accD-psaI_p5 accD-psaI 5 GCGAGAAAATCACCCGTTTG CATTCGACTGGAGTTGGGAG 20 20 50.0 55.0 58.0 58.0 0.0 0.0 0.051989 62924 63992 1983-1983 0.500000 59.6 psbE-petL_p1 psbE-petL 1 ACTGACGAATAACCAACCCG ACCAAAATAACTAGTTATAGTAGGCA 20 26 50.0 30.8 57.9 56.0 0.0 24.9 8.114200 69757 70935 1323-1360 1.000000 52.0 psbE-petL_p2 psbE-petL 2 ACGAATAACCAACCCGCAAT ACCAAAATAACTAGTTATAGTAGGCA 20 26 45.0 30.8 58.2 56.0 0.0 24.9 8.196271 69757 70935 1319-1356 1.000000 52.0 psbE-petL_p3 psbE-petL 3 ACTGACGAATAACCAACCCG AACCAAAATAACTAGTTATAGTAGGCA 20 27 50.0 29.6 57.9 56.6 0.0 24.9 8.499475 69757 70935 1324-1361 1.000000 52.0 psbE-petL_p4 psbE-petL 4 ACGAATAACCAACCCGCAAT AACCAAAATAACTAGTTATAGTAGGCA 20 27 45.0 29.6 58.2 56.6 0.0 24.9 8.581546 69757 70935 1320-1357 1.000000 52.0 psbE-petL_p5 psbE-petL 5 ACTGACGAATAACCAACCCG CCAAAATAACTAGTTATAGTAGGCA 20 25 50.0 32.0 57.9 54.4 0.0 24.9 8.657328 69757 70935 1322-1359 1.000000 52.0 clpP_p1 clpP 1 GATTGGCTGTCTTGCGTTTC TGTGAACAGAAAGCAACCGA 20 20 50.0 45.0 58.0 58.0 0.0 0.0 0.062155 75024 77130 2088-2842 1.000000 91.5 clpP_p2 clpP 2 GATTGGCTGTCTTGCGTTTC ACGAACATACCCTGTCTCCA 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.097875 75024 77130 2203-2957 1.000000 91.2 clpP_p3 clpP 3 GATTGGCTGTCTTGCGTTTC ACATTGGATCAAGAACGGGG 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.159667 75024 77130 2184-2938 1.000000 90.7 clpP_p4 clpP 4 GATTGGCTGTCTTGCGTTTC CATTGGATCAAGAACGGGGT 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.159667 75024 77130 2183-2937 1.000000 90.7 clpP_p5 clpP 5 GATTGGCTGTCTTGCGTTTC CGCAATGGGGAATTGGTTTC 20 20 50.0 50.0 58.0 58.0 0.0 0.7 0.039648 75024 77130 2555-2555 0.500000 59.7 tRNA-Leu(CAA)-ndhB_p1 tRNA-Leu(CAA)-ndhB 1 GTCTCGCGTGTCTACCATTT TGCAATTGCTCAGGATACCC 20 20 50.0 50.0 58.0 57.9 5.8 29.4 0.064968 99878 100860 853-1043 1.000000 90.7 tRNA-Leu(CAA)-ndhB_p2 tRNA-Leu(CAA)-ndhB 2 CTCGCGTGTCTACCATTTCA TGCAATTGCTCAGGATACCC 20 20 50.0 50.0 58.0 57.9 5.8 29.4 0.066338 99878 100860 851-1041 1.000000 90.7 tRNA-Leu(CAA)-ndhB_p3 tRNA-Leu(CAA)-ndhB 3 GCGTGTCTACCATTTCACCA TGCAATTGCTCAGGATACCC 20 20 50.0 50.0 58.2 57.9 0.0 29.4 0.253803 99878 100860 848-1038 1.000000 89.3 tRNA-Leu(CAA)-ndhB_p4 tRNA-Leu(CAA)-ndhB 4 TCTCGCGTGTCTACCATTTC TGCAATTGCTCAGGATACCC 20 20 50.0 50.0 57.7 57.9 5.8 29.4 0.330507 99878 100860 852-1042 1.000000 88.6 tRNA-Leu(CAA)-ndhB_p5 tRNA-Leu(CAA)-ndhB 5 TCGCGTGTCTACCATTTCAC TGCAATTGCTCAGGATACCC 20 20 50.0 50.0 58.3 57.9 5.8 29.4 0.351881 99878 100860 850-1040 1.000000 88.5 tRNA-Asn(GUU)-ndhF_p1 tRNA-Asn(GUU)-ndhF 1 CGGGAGAATTGATGACTGCA TTTCTTTGCGGGTGAAGGAA 20 20 50.0 45.0 58.0 57.9 0.0 0.0 0.088470 115164 115830 1142-1535 1.000000 90.5 tRNA-Asn(GUU)-ndhF_p2 tRNA-Asn(GUU)-ndhF 2 ACCTGGGGCTTTTTACAAGG TTTCTTTGCGGGTGAAGGAA 20 20 50.0 45.0 58.0 57.9 0.0 0.0 0.069732 115164 115830 1069-1069 0.500000 59.4 tRNA-Asn(GUU)-ndhF_p3 tRNA-Asn(GUU)-ndhF 3 ACCTGGGGCTTTTTACAAGG GGGGCGAATCTCGTCTTATC 20 20 50.0 55.0 58.0 57.9 0.0 0.3 0.077095 115164 115830 1030-1030 0.500000 59.4 tRNA-Asn(GUU)-ndhF_p4 tRNA-Asn(GUU)-ndhF 4 ACAGGGAACGGGTTAGGTTA TTTCTTTGCGGGTGAAGGAA 20 20 50.0 45.0 58.0 57.9 0.0 0.0 0.088612 115164 115830 955-955 0.500000 59.3 tRNA-Asn(GUU)-ndhF_p5 tRNA-Asn(GUU)-ndhF 5 CGGGAGAATTGATGACTGCA GGGGCGAATCTCGTCTTATC 20 20 50.0 55.0 58.0 57.9 0.0 0.3 0.095834 115164 115830 1103-1103 0.500000 59.2 psaC-ndhE_p1 psaC-ndhE 1 GGCCCGTACACATTGAGTAC CGTATCAATCAATCAAATTTGTTGA 20 25 55.0 28.0 58.4 55.3 12.7 24.9 8.101191 123543 124525 1076-1103 1.000000 52.0 psaC-ndhE_p2 psaC-ndhE 2 GCCCGTACACATTGAGTACA CGTATCAATCAATCAAATTTGTTGA 20 25 50.0 28.0 57.6 55.3 19.8 24.9 8.123235 123543 124525 1075-1102 1.000000 52.0 psaC-ndhE_p3 psaC-ndhE 3 AGGCCCGTACACATTGAGTA CGTATCAATCAATCAAATTTGTTGA 20 25 50.0 28.0 58.4 55.3 0.0 24.9 8.185771 123543 124525 1077-1104 1.000000 52.0 psaC-ndhE_p4 psaC-ndhE 4 GGCCCGTACACATTGAGTAC CGTATCAATCAATCAAATTTGTTG 20 24 55.0 29.2 58.4 53.9 12.7 17.5 8.434962 123543 124525 1076-1103 1.000000 52.0 psaC-ndhE_p5 psaC-ndhE 5 GGCCCGTACACATTGAGTAC CGTATCAATCAATCAAATTTGTTGAA 20 26 55.0 26.9 58.4 55.9 12.7 25.8 8.456443 123543 124525 1076-1103 1.000000 52.0 ycf1_p1 ycf1 1 CGAGGAGAACCAAAAGGGAG AAGAGGTTCCTCGATGGTCA 20 20 55.0 50.0 57.9 58.1 0.0 12.4 0.162020 135180 135299 916-916 0.500000 58.7 ycf1_p2 ycf1 2 CGAGGAGAACCAAAAGGGAG CAAATGTGCATTCGCCACTT 20 20 55.0 45.0 57.9 57.9 0.0 0.0 0.169442 135180 135299 622-622 0.500000 58.6 ycf1_p3 ycf1 3 CGAGGAGAACCAAAAGGGAG GAAGTCCCATTGGAATCCCC 20 20 55.0 55.0 57.9 57.9 0.0 3.6 0.173857 135180 135299 1118-1118 0.500000 58.6 ycf1_p4 ycf1 4 CGAGGAGAACCAAAAGGGAG ACTTCTACAGATGCGGAGGA 20 20 55.0 50.0 57.9 57.9 0.0 0.0 0.246002 135180 135299 1274-1274 0.500000 58.0 ycf1_p5 ycf1 5 CGAGGAGAACCAAAAGGGAG TTCTACAGATGCGGAGGAGT 20 20 55.0 50.0 57.9 57.9 0.0 0.0 0.246002 135180 135299 1272-1272 0.500000 58.0 ndhB-tRNA-Leu(CAA)_p1 ndhB-tRNA-Leu(CAA) 1 TGCAATTGCTCAGGATACCC GTCTCGCGTGTCTACCATTT 20 20 50.0 50.0 57.9 58.0 29.4 5.8 0.064968 152190 153172 853-1043 1.000000 90.7 ndhB-tRNA-Leu(CAA)_p2 ndhB-tRNA-Leu(CAA) 2 TGCAATTGCTCAGGATACCC CTCGCGTGTCTACCATTTCA 20 20 50.0 50.0 57.9 58.0 29.4 5.8 0.066338 152190 153172 851-1041 1.000000 90.7 ndhB-tRNA-Leu(CAA)_p3 ndhB-tRNA-Leu(CAA) 3 TGCAATTGCTCAGGATACCC GCGTGTCTACCATTTCACCA 20 20 50.0 50.0 57.9 58.2 29.4 0.0 0.253803 152190 153172 848-1038 1.000000 89.3 ndhB-tRNA-Leu(CAA)_p4 ndhB-tRNA-Leu(CAA) 4 TGCAATTGCTCAGGATACCC TCTCGCGTGTCTACCATTTC 20 20 50.0 50.0 57.9 57.7 29.4 5.8 0.330507 152190 153172 852-1042 1.000000 88.6 ndhB-tRNA-Leu(CAA)_p5 ndhB-tRNA-Leu(CAA) 5 TGCAATTGCTCAGGATACCC TCGCGTGTCTACCATTTCAC 20 20 50.0 50.0 57.9 58.3 29.4 5.8 0.351881 152190 153172 850-1040 1.000000 88.5