feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score psbA gene psbA psbA 89 1150 -1 1062 LSC 0.000538 2 0 65 123 no 0.142857 2 0.500000 0.000538 1.000000 33.000000 IGS_001 igs psbA|trnK-UUU psbA-trnK-UUU 1151 1379 0 229 LSC 0.003743 3 0 300 212 no 0.285714 3 0.666667 0.003743 1.000000 42.400000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1380 1414 -1 35 LSC 0.000000 0 0 18 177 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 matK gene matK matK 1657 3201 -1 1545 LSC 0.003791 18 0 64 89 no 0.428571 4 0.750000 0.003791 1.000000 40.900000 IGS_004 igs matK|trnK-UUU matK-trnK-UUU 3202 3870 0 669 LSC 0.002847 6 0 95 72 no 0.428571 4 0.750000 0.002847 1.000000 40.800000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 3871 3907 -1 37 LSC 0.000000 0 0 155 35 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_005 igs trnK-UUU|rps16 trnK-UUU-rps16 3908 4351 0 444 LSC 0.003647 5 7 192 6 no 0.428571 4 0.750000 0.003671 1.000000 35.200000 rps16 gene rps16 rps16 4352 5453 -1 1102 LSC 0.002161 7 0 4 127 no 0.285714 3 0.666667 0.002161 1.000000 32.400000 IGS_006 igs rps16|trnQ-UUG rps16-trnQ-UUG 5454 6007 0 554 LSC 0.010487 17 4 220 83 yes 0.428571 4 0.750000 0.009826 1.000000 47.700000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 6008 6079 -1 72 LSC 0.000000 0 0 61 11 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_007 igs trnQ-UUG|psbK trnQ-UUG-psbK 6080 6429 0 350 LSC 0.003810 3 0 133 50 no 0.142857 4 0.250000 0.003810 1.000000 29.000000 psbK gene psbK psbK 6430 6615 1 186 LSC 0.001536 1 0 88 52 no 0.142857 2 0.500000 0.001536 1.000000 26.700000 IGS_008 igs psbK|psbI psbK-psbI 6616 6964 0 349 LSC 0.005185 5 0 135 122 no 0.285714 3 0.666667 0.005185 1.000000 38.400000 psbI gene psbI psbI 6965 7120 1 156 LSC 0.001832 1 0 107 5 no 0.142857 2 0.500000 0.001832 1.000000 23.400000 IGS_009 igs psbI|trnS-GCU psbI-trnS-GCU 7121 7240 0 120 LSC 0.006349 2 0 33 137 no 0.285714 3 0.666667 0.006349 1.000000 31.500000 trnS-GCU tRNA trnS-GCU trnS-GCU 7241 7328 -1 88 LSC 0.000000 0 0 105 49 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_010 igs trnS-GCU|psbD trnS-GCU-psbD 7329 8317 0 989 LSC 0.002985 9 18 193 134 yes 0.571429 5 0.800000 0.003030 1.000000 50.400000 psbD gene psbD psbD 8318 9379 1 1062 LSC 0.000807 3 0 100 1 no 0.285714 3 0.666667 0.000807 1.000000 31.100000 psbC gene psbC psbC 9327 10748 1 1422 LSC 0.002612 10 0 300 84 no 0.571429 5 0.800000 0.002612 1.000000 44.100000 IGS_012 igs psbC|trnS-UGA psbC-trnS-UGA 10749 10898 0 150 LSC 0.006984 3 0 27 300 no 0.428571 4 0.750000 0.006984 1.000000 34.500000 trnS-UGA tRNA trnS-UGA trnS-UGA 10899 10986 -1 88 LSC 0.000000 0 0 31 300 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_013 igs trnS-UGA|psbZ trnS-UGA-psbZ 10987 11329 0 343 LSC 0.000000 0 0 119 244 no 0.000000 1 0.000000 0.000000 1.000000 28.600000 psbZ gene psbZ psbZ 11330 11518 1 189 LSC 0.000000 0 0 300 55 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 IGS_014 igs psbZ|trnG-GCC psbZ-trnG-GCC 11519 11805 0 287 LSC 0.001991 2 0 300 206 no 0.142857 2 0.500000 0.001991 1.000000 38.200000 trnG-GCC tRNA trnG-GCC trnG-GCC 11806 11876 1 71 LSC 0.000000 0 0 230 135 no 0.000000 1 0.000000 0.000000 1.000000 28.900000 IGS_015 igs trnG-GCC|trnfM-CAU trnG-GCC-trnfM-CAU 11877 12250 0 374 LSC 0.002292 3 2 300 84 no 0.428571 4 0.750000 0.002299 1.000000 37.300000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 12251 12324 -1 74 LSC 0.000000 0 0 36 10 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_016 igs trnfM-CAU|trnG-UCC trnfM-CAU-trnG-UCC 12325 12408 0 84 LSC 0.006803 2 0 110 157 no 0.142857 2 0.500000 0.006803 1.000000 35.700000 trnG-UCC_part2 tRNA trnG-UCC trnG-UCC 12409 12456 -1 48 LSC 0.000000 0 0 43 109 no 0.000000 1 0.000000 0.000000 1.000000 22.000000 trnG-UCC_part1 tRNA trnG-UCC trnG-UCC 13140 13162 -1 23 LSC 0.000000 0 0 187 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_019 igs trnG-UCC|AU144_gp115 trnG-UCC-AU144_gp115 13163 13741 0 579 LSC 0.003372 6 19 210 64 no 0.428571 4 0.750000 0.003261 1.000000 44.200000 AU144_gp115 gene AU144_gp115 AU144_gp115 13742 13927 -1 186 LSC 0.007168 3 0 62 22 no 0.428571 4 0.750000 0.007168 1.000000 33.700000 IGS_020 igs AU144_gp115|AU144_gp114 AU144_gp115-AU144_gp114 13928 14238 0 311 LSC 0.005206 5 0 74 41 no 0.285714 3 0.666667 0.005206 1.000000 31.800000 AU144_gp114 gene AU144_gp114 AU144_gp114 14239 14685 -1 447 LSC 0.002557 4 0 173 43 no 0.428571 4 0.750000 0.002557 1.000000 35.300000 IGS_021 igs AU144_gp114|trnT-GGU AU144_gp114-trnT-GGU 14686 15142 0 457 LSC 0.003751 5 1 210 93 no 0.571429 5 0.800000 0.003758 1.000000 43.000000 trnT-GGU tRNA trnT-GGU trnT-GGU 15143 15214 1 72 LSC 0.000000 0 0 209 21 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 trnT-GGU tRNA trnT-GGU trnT-GGU 15210 15287 1 78 LSC 0.003663 1 0 276 28 no 0.142857 2 0.500000 0.003663 1.000000 26.800000 IGS_023 igs trnT-GGU|trnE-UUC trnT-GGU-trnE-UUC 15288 15733 0 446 LSC 0.005766 7 1 51 108 no 0.285714 4 0.500000 0.005770 1.000000 35.800000 trnE-UUC tRNA trnE-UUC trnE-UUC 15734 15806 1 73 LSC 0.000000 0 0 227 35 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_024 igs trnE-UUC|trnY-GUA trnE-UUC-trnY-GUA 15807 15867 0 61 LSC 0.009368 1 0 300 116 no 0.000000 2 0.000000 0.009368 1.000000 33.700000 trnY-GUA tRNA trnY-GUA trnY-GUA 15868 15951 1 84 LSC 0.000000 0 0 25 32 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_025 igs trnY-GUA|trnD-GUC trnY-GUA-trnD-GUC 15952 16309 0 358 LSC 0.005986 6 1 109 81 no 0.285714 3 0.666667 0.006002 1.000000 36.500000 trnD-GUC tRNA trnD-GUC trnD-GUC 16310 16383 1 74 LSC 0.000000 0 0 119 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_026 igs trnD-GUC|psbM trnD-GUC-psbM 16384 17455 0 1072 LSC 0.005242 19 2 193 134 yes 0.285714 3 0.666667 0.005246 1.000000 45.200000 psbM gene psbM psbM 17456 17560 1 105 LSC 0.000000 0 0 112 29 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_027 igs psbM|petN psbM-petN 17561 18378 0 818 LSC 0.006287 13 37 217 239 yes 0.714286 6 0.833333 0.006469 1.000000 63.500000 petN gene petN petN 18379 18468 -1 90 LSC 0.000000 0 0 26 149 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_028 igs petN|trnC-GCA petN-trnC-GCA 18469 19399 0 931 LSC 0.004399 10 0 116 300 no 0.428571 4 0.750000 0.004399 1.000000 45.100000 trnC-GCA tRNA trnC-GCA trnC-GCA 19400 19470 -1 71 LSC 0.000000 0 0 96 278 no 0.000000 1 0.000000 0.000000 1.000000 25.900000 IGS_029 igs trnC-GCA|rpoB trnC-GCA-rpoB 19471 20615 0 1145 LSC 0.003743 11 0 167 300 yes 0.428571 4 0.750000 0.003743 1.000000 48.400000 rpoB gene rpoB rpoB 20616 23843 1 3228 LSC 0.001180 12 0 92 2 no 0.428571 4 0.750000 0.001180 1.000000 30.700000 IGS_030 igs rpoB|rpoC1 rpoB-rpoC1 23844 23880 0 37 LSC 0.015444 1 0 9 119 no 0.000000 2 0.000000 0.015444 1.000000 29.800000 rpoC1 gene rpoC1 rpoC1 23881 25932 1 2052 LSC 0.001578 10 0 34 12 no 0.428571 4 0.750000 0.001578 1.000000 34.100000 IGS_031 igs rpoC1|rpoC2 rpoC1-rpoC2 25933 26131 0 199 LSC 0.001436 1 0 300 176 no 0.142857 2 0.500000 0.001436 1.000000 35.900000 rpoC2 gene rpoC2 rpoC2 26132 30703 1 4572 LSC 0.001646 23 0 186 11 no 0.428571 4 0.750000 0.001646 1.000000 29.600000 IGS_032 igs rpoC2|rps2 rpoC2-rps2 30704 31003 0 300 LSC 0.005810 4 11 4 47 no 0.285714 4 0.500000 0.005335 1.000000 33.100000 rps2 gene rps2 rps2 31004 31714 1 711 LSC 0.000804 2 0 84 300 no 0.285714 3 0.666667 0.000804 1.000000 37.400000 IGS_033 igs rps2|atpI rps2-atpI 31715 31964 0 250 LSC 0.000000 0 0 271 230 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 atpI gene atpI atpI 31965 32708 1 744 LSC 0.002176 4 0 300 53 no 0.428571 4 0.750000 0.002176 1.000000 38.700000 IGS_034 igs atpI|atpH atpI-atpH 32709 33514 0 806 LSC 0.004845 11 0 240 47 no 0.571429 5 0.800000 0.004845 1.000000 43.100000 atpH gene atpH atpH 33515 33760 1 246 LSC 0.001161 1 0 124 77 no 0.142857 2 0.500000 0.001161 1.000000 28.200000 IGS_035 igs atpH|atpF atpH-atpF 33761 34234 0 474 LSC 0.003416 5 0 198 300 yes 0.428571 4 0.750000 0.003416 1.000000 48.100000 atpF gene atpF atpF 34235 35609 1 1375 LSC 0.001177 5 0 25 300 no 0.428571 4 0.750000 0.001177 1.000000 35.900000 IGS_036 igs atpF|atpA atpF-atpA 35610 35701 0 92 LSC 0.000000 0 0 66 300 no 0.000000 1 0.000000 0.000000 1.000000 23.700000 atpA gene atpA atpA 35702 37225 1 1524 LSC 0.000750 4 0 158 47 no 0.285714 3 0.666667 0.000750 1.000000 34.500000 IGS_037 igs atpA|trnR-UCU atpA-trnR-UCU 37226 37363 0 138 LSC 0.002070 1 0 131 88 no 0.142857 2 0.500000 0.002070 1.000000 29.900000 trnR-UCU tRNA trnR-UCU trnR-UCU 37364 37435 -1 72 LSC 0.000000 0 0 90 16 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_038 igs trnR-UCU|trnfM-CAU trnR-UCU-trnfM-CAU 37436 37602 0 167 LSC 0.004562 2 0 162 54 no 0.285714 3 0.666667 0.004562 1.000000 31.700000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 37603 37656 -1 54 LSC 0.000000 0 0 135 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_039 igs trnfM-CAU|rps14 trnfM-CAU-rps14 37657 37823 0 167 LSC 0.005133 3 5 189 66 no 0.428571 4 0.750000 0.005291 1.000000 39.600000 rps14 gene rps14 rps14 37824 38135 -1 312 LSC 0.000916 1 0 51 77 no 0.142857 2 0.500000 0.000916 1.000000 26.300000 IGS_040 igs rps14|psaB rps14-psaB 38136 38286 0 151 LSC 0.001892 1 0 245 300 no 0.142857 2 0.500000 0.001892 1.000000 38.100000 psaB gene psaB psaB 38287 40491 -1 2205 LSC 0.000648 4 0 73 300 no 0.142857 3 0.333333 0.000648 1.000000 32.200000 IGS_041 igs psaB|psaA psaB-psaA 40492 40516 0 25 LSC 0.000000 0 0 155 300 no 0.000000 1 0.000000 0.000000 1.000000 30.400000 psaA gene psaA psaA 40517 42769 -1 2253 LSC 0.001226 8 0 180 300 no 0.428571 4 0.750000 0.001226 1.000000 46.000000 IGS_042 igs psaA|ycf3 psaA-ycf3 42770 43405 0 636 LSC 0.000449 1 3 119 39 no 0.428571 4 0.750000 0.000451 1.000000 36.900000 ycf3 gene ycf3 ycf3 43406 45419 -1 2014 LSC 0.001892 11 11 151 139 no 0.571429 5 0.800000 0.001896 1.000000 47.300000 IGS_043 igs ycf3|trnS-GGA ycf3-trnS-GGA 45420 46009 0 590 LSC 0.002744 5 6 47 300 no 0.428571 4 0.750000 0.002771 1.000000 39.800000 trnS-GGA tRNA trnS-GGA trnS-GGA 46010 46096 1 87 LSC 0.000000 0 0 2 221 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_044 igs trnS-GGA|rps4 trnS-GGA-rps4 46097 46382 0 286 LSC 0.002664 2 0 89 237 no 0.285714 3 0.666667 0.002664 1.000000 32.900000 rps4 gene rps4 rps4 46383 46988 -1 606 LSC 0.001257 2 0 13 69 no 0.285714 3 0.666667 0.001257 1.000000 32.300000 IGS_045 igs rps4|trnT-UGU rps4-trnT-UGU 46989 47298 0 310 LSC 0.002765 3 4 20 120 no 0.428571 4 0.750000 0.002797 1.000000 32.400000 trnT-UGU tRNA trnT-UGU trnT-UGU 47299 47371 -1 73 LSC 0.000000 0 0 77 47 no 0.000000 1 0.000000 0.000000 1.000000 22.300000 IGS_046 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 47372 48171 0 800 LSC 0.004881 10 3 150 72 yes 0.571429 5 0.800000 0.004892 1.000000 45.300000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 48172 48206 1 35 LSC 0.000000 0 0 87 37 no 0.000000 1 0.000000 0.000000 1.000000 21.500000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 48754 48803 1 50 LSC 0.000000 0 0 85 104 no 0.000000 1 0.000000 0.000000 1.000000 25.100000 IGS_049 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 48804 49072 0 269 LSC 0.002124 2 1 135 114 no 0.142857 2 0.500000 0.002132 1.000000 32.300000 trnF-GAA tRNA trnF-GAA trnF-GAA 49073 49145 1 73 LSC 0.000000 0 0 150 41 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_050 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 49146 49733 0 588 LSC 0.002106 3 27 223 241 yes 0.428571 4 0.750000 0.002193 1.000000 54.800000 ndhJ gene ndhJ ndhJ 49734 50213 -1 480 LSC 0.000595 1 0 101 11 no 0.142857 2 0.500000 0.000595 1.000000 26.500000 IGS_051 igs ndhJ|ndhK ndhJ-ndhK 50214 50311 0 98 LSC 0.002915 1 0 238 176 no 0.142857 2 0.500000 0.002915 1.000000 37.200000 ndhK gene ndhK ndhK 50312 51076 -1 765 LSC 0.001369 3 0 86 300 no 0.428571 4 0.750000 0.001369 1.000000 40.600000 ndhC gene ndhC ndhC 51067 51429 -1 363 LSC 0.000000 0 0 300 35 no 0.000000 1 0.000000 0.000000 1.000000 22.700000 IGS_053 igs ndhC|trnV-UAC ndhC-trnV-UAC 51430 52376 0 947 LSC 0.010328 26 28 300 153 yes 0.714286 6 0.833333 0.008726 0.997888 61.400000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 52377 52411 -1 35 LSC 0.000000 0 0 20 118 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 53016 53054 -1 39 LSC 0.000000 0 0 135 120 no 0.000000 1 0.000000 0.000000 1.000000 27.700000 IGS_056 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 53055 53310 0 256 LSC 0.002976 2 32 174 300 no 0.285714 3 0.666667 0.003259 1.000000 45.100000 trnM-CAU tRNA trnM-CAU trnM-CAU 53311 53383 1 73 LSC 0.000000 0 0 2 300 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_057 igs trnM-CAU|atpE trnM-CAU-atpE 53384 53500 0 117 LSC 0.000000 0 0 75 249 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 atpE gene atpE atpE 53501 53914 -1 414 LSC 0.001380 1 0 192 212 no 0.000000 2 0.000000 0.001380 1.000000 36.400000 atpB gene atpB atpB 53911 55407 -1 1497 LSC 0.001718 7 0 160 54 no 0.428571 4 0.750000 0.001718 1.000000 38.400000 IGS_059 igs atpB|rbcL atpB-rbcL 55408 56198 0 791 LSC 0.002769 7 0 134 39 no 0.428571 4 0.750000 0.002769 1.000000 38.300000 rbcL gene rbcL rbcL 56199 57632 1 1434 LSC 0.002125 10 4 19 33 no 0.428571 4 0.750000 0.002130 1.000000 36.600000 IGS_060 igs rbcL|rpl23 rbcL-rpl23 57633 57915 0 283 LSC 0.005384 5 72 11 26 no 0.285714 3 0.666667 0.005745 1.000000 34.700000 rpl23 gene rpl23 rpl23 57916 58197 1 282 LSC 0.016211 10 3 77 25 yes 0.428571 4 0.750000 0.016289 1.000000 41.700000 IGS_061 igs rpl23|psaI rpl23-psaI 58198 58583 0 386 LSC 0.006908 8 0 8 191 no 0.285714 3 0.666667 0.006908 1.000000 32.200000 psaI gene psaI psaI 58584 58694 1 111 LSC 0.000000 0 0 157 80 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_062 igs psaI|ycf4 psaI-ycf4 58695 59051 0 357 LSC 0.006669 6 0 268 300 yes 0.428571 4 0.750000 0.006669 1.000000 48.100000 ycf4 gene ycf4 ycf4 59052 59609 1 558 LSC 0.000000 0 0 9 83 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_063 igs ycf4|cemA ycf4-cemA 59610 59979 0 370 LSC 0.003604 4 1 300 300 no 0.428571 4 0.750000 0.003605 1.000000 46.500000 cemA gene cemA cemA 59980 60672 1 693 LSC 0.000000 0 0 209 11 no 0.000000 1 0.000000 0.000000 1.000000 25.800000 IGS_064 igs cemA|petA cemA-petA 60673 60920 0 248 LSC 0.008065 6 3 300 25 no 0.142857 3 0.333333 0.008144 1.000000 31.400000 petA gene petA petA 60921 61883 1 963 LSC 0.001187 3 0 166 175 no 0.428571 4 0.750000 0.001187 1.000000 46.400000 IGS_065 igs petA|psbJ petA-psbJ 61884 62799 0 916 LSC 0.004783 11 233 135 27 yes 0.285714 3 0.666667 0.005350 1.000000 41.100000 psbJ gene psbJ psbJ 62800 62922 -1 123 LSC 0.002323 1 0 136 108 no 0.142857 2 0.500000 0.002323 1.000000 31.600000 IGS_066 igs psbJ|psbL psbJ-psbL 62923 63047 0 125 LSC 0.003810 1 0 95 9 no 0.000000 2 0.000000 0.003810 1.000000 22.100000 psbL gene psbL psbL 63048 63164 -1 117 LSC 0.002442 1 0 16 300 no 0.142857 2 0.500000 0.002442 1.000000 24.800000 IGS_067 igs psbL|psbF psbL-psbF 63165 63186 0 22 LSC 0.000000 0 0 107 300 no 0.000000 1 0.000000 0.000000 1.000000 26.800000 psbF gene psbF psbF 63187 63306 -1 120 LSC 0.000000 0 0 129 300 no 0.000000 1 0.000000 0.000000 1.000000 28.400000 IGS_068 igs psbF|psbE psbF-psbE 63307 63316 0 10 LSC 0.000000 0 0 249 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbE gene psbE psbE 63317 63568 -1 252 LSC 0.000000 0 0 259 181 no 0.000000 1 0.000000 0.000000 1.000000 32.300000 IGS_069 igs psbE|petL psbE-petL 63569 64851 0 1283 LSC 0.003637 14 0 300 300 yes 0.428571 4 0.750000 0.003637 1.000000 51.000000 petL gene petL petL 64852 64947 1 96 LSC 0.000000 0 0 120 300 no 0.000000 1 0.000000 0.000000 1.000000 27.700000 IGS_070 igs petL|petG petL-petG 64948 65131 0 184 LSC 0.000000 0 0 216 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 petG gene petG petG 65132 65245 1 114 LSC 0.000000 0 0 300 219 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_071 igs petG|trnW-CCA petG-trnW-CCA 65246 65376 0 131 LSC 0.000000 0 4 300 88 no 0.428571 4 0.750000 0.000000 1.000000 36.900000 trnW-CCA tRNA trnW-CCA trnW-CCA 65377 65450 -1 74 LSC 0.000000 0 0 300 14 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_072 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 65451 65581 0 131 LSC 0.004362 2 0 300 87 no 0.285714 3 0.666667 0.004362 1.000000 34.500000 trnP-UGG tRNA trnP-UGG trnP-UGG 65582 65656 -1 75 LSC 0.000000 0 0 27 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_073 igs trnP-UGG|psaJ trnP-UGG-psaJ 65657 66038 0 382 LSC 0.002992 4 0 102 300 no 0.285714 3 0.666667 0.002992 1.000000 36.100000 psaJ gene psaJ psaJ 66039 66167 1 129 LSC 0.000000 0 0 175 235 no 0.000000 1 0.000000 0.000000 1.000000 31.900000 IGS_074 igs psaJ|rpl33 psaJ-rpl33 66168 66517 0 350 LSC 0.003265 4 0 300 5 no 0.428571 4 0.750000 0.003265 1.000000 31.100000 rpl33 gene rpl33 rpl33 66518 66718 1 201 LSC 0.002843 2 0 32 38 no 0.285714 3 0.666667 0.002843 1.000000 29.000000 IGS_075 igs rpl33|rps18 rpl33-rps18 66719 66995 0 277 LSC 0.003094 3 4 74 300 no 0.285714 3 0.666667 0.003130 1.000000 34.100000 rps18 gene rps18 rps18 66996 67487 1 492 LSC 0.001742 3 0 136 300 no 0.142857 2 0.500000 0.001742 1.000000 37.200000 IGS_076 igs rps18|rpl20 rps18-rpl20 67488 67711 0 224 LSC 0.000000 0 0 44 300 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 rpl20 gene rpl20 rpl20 67712 68071 -1 360 LSC 0.001323 1 0 268 46 no 0.000000 2 0.000000 0.001323 1.000000 24.400000 IGS_077 igs rpl20|rps12 rpl20-rps12 68072 68775 0 704 LSC 0.002029 4 0 39 214 no 0.428571 4 0.750000 0.002029 1.000000 37.600000 rps12_part1 gene rps12 rps12 68776 68889 -1 114 LSC 0.000000 0 0 197 100 no 0.000000 1 0.000000 0.000000 1.000000 26.200000 IGS_078 igs rps12|clpP rps12-clpP 68890 69029 0 140 LSC 0.006122 2 0 300 198 no 0.142857 3 0.333333 0.006122 1.000000 40.800000 clpP gene clpP clpP 69030 69680 -1 651 LSC 0.001170 2 0 14 300 no 0.142857 3 0.333333 0.001170 1.000000 29.600000 IGS_079 igs clpP|psbB clpP-psbB 69681 70184 0 504 LSC 0.000000 0 0 219 300 no 0.000000 1 0.000000 0.000000 1.000000 38.000000 psbB gene psbB psbB 70185 71711 1 1527 LSC 0.001434 6 0 300 54 no 0.428571 4 0.750000 0.001434 1.000000 38.200000 IGS_080 igs psbB|psbT psbB-psbT 71712 71880 0 169 LSC 0.003381 2 5 300 160 no 0.285714 3 0.666667 0.003484 1.000000 42.500000 psbT gene psbT psbT 71881 71982 1 102 LSC 0.000000 0 0 96 58 no 0.000000 1 0.000000 0.000000 1.000000 23.100000 IGS_081 igs psbT|psbN psbT-psbN 71983 72056 0 74 LSC 0.003861 1 0 198 102 no 0.142857 2 0.500000 0.003861 1.000000 32.500000 psbN gene psbN psbN 72057 72188 -1 132 LSC 0.002165 1 0 15 222 no 0.142857 2 0.500000 0.002165 1.000000 24.500000 IGS_082 igs psbN|psbH psbN-psbH 72189 72291 0 103 LSC 0.000000 0 0 29 119 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 psbH gene psbH psbH 72292 72513 1 222 LSC 0.002574 2 0 132 227 no 0.285714 3 0.666667 0.002574 1.000000 36.300000 IGS_083 igs psbH|petB psbH-petB 72514 72642 0 129 LSC 0.000000 0 0 9 98 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 petB gene petB petB 72643 74045 1 1403 LSC 0.002308 9 0 138 154 no 0.428571 4 0.750000 0.002308 1.000000 45.200000 IGS_084 igs petB|petD petB-petD 74046 74238 0 193 LSC 0.002467 1 0 300 185 no 0.000000 2 0.000000 0.002467 1.000000 34.400000 petD gene petD petD 74239 75453 1 1215 LSC 0.001411 4 0 38 11 no 0.142857 3 0.333333 0.001411 1.000000 29.600000 IGS_085 igs petD|rpoA petD-rpoA 75454 75673 0 220 LSC 0.006061 4 2 279 63 no 0.714286 6 0.833333 0.006083 1.000000 42.900000 rpoA gene rpoA rpoA 75674 76693 -1 1020 LSC 0.002148 7 0 51 300 no 0.428571 4 0.750000 0.002148 1.000000 38.700000 IGS_086 igs rpoA|rps11 rpoA-rps11 76694 76757 0 64 LSC 0.000000 0 0 87 240 no 0.000000 1 0.000000 0.000000 1.000000 25.300000 rps11 gene rps11 rps11 76758 77189 -1 432 LSC 0.001102 1 0 151 126 no 0.000000 2 0.000000 0.001102 1.000000 31.700000 IGS_087 igs rps11|rpl36 rps11-rpl36 77190 77361 0 172 LSC 0.001661 1 0 191 118 no 0.142857 2 0.500000 0.001661 1.000000 31.800000 rpl36 gene rpl36 rpl36 77362 77475 -1 114 LSC 0.000000 0 0 45 4 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_088 igs rpl36|infA rpl36-infA 77476 77576 0 101 LSC 0.008487 3 0 159 222 no 0.428571 4 0.750000 0.008487 1.000000 46.200000 infA gene infA infA 77577 77900 -1 324 LSC 0.002646 3 0 30 74 no 0.428571 4 0.750000 0.002646 1.000000 31.900000 IGS_089 igs infA|rps8 infA-rps8 77901 77979 0 79 LSC 0.006028 1 0 18 174 no 0.000000 2 0.000000 0.006028 1.000000 24.400000 rps8 gene rps8 rps8 77980 78390 -1 411 LSC 0.000695 1 0 4 7 no 0.142857 2 0.500000 0.000695 1.000000 24.700000 IGS_090 igs rps8|rpl14 rps8-rpl14 78391 78529 0 139 LSC 0.004111 2 0 236 18 no 0.285714 3 0.666667 0.004111 1.000000 29.100000 rpl14 gene rpl14 rpl14 78530 78901 -1 372 LSC 0.003072 3 0 30 59 no 0.428571 4 0.750000 0.003072 1.000000 32.900000 IGS_091 igs rpl14|rpl16 rpl14-rpl16 78902 79010 0 109 LSC 0.005242 2 0 174 300 no 0.142857 2 0.500000 0.005242 1.000000 39.100000 rpl16 gene rpl16 rpl16 79011 80479 -1 1469 LSC 0.002496 12 4 16 75 no 0.571429 5 0.800000 0.002435 1.000000 39.400000 IGS_092 igs rpl16|rps3 rpl16-rps3 80480 80624 0 145 LSC 0.005911 3 0 188 12 no 0.285714 3 0.666667 0.005911 1.000000 30.300000 rps3 gene rps3 rps3 80625 81299 -1 675 LSC 0.002399 4 0 14 65 no 0.428571 4 0.750000 0.002399 1.000000 35.900000 IGS_093 igs rps3|rpl22 rps3-rpl22 81300 81358 0 59 LSC 0.000000 0 0 300 6 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 rpl22 gene rpl22 rpl22 81359 81808 -1 450 LSC 0.003175 4 0 300 41 no 0.571429 5 0.800000 0.003175 1.000000 38.200000 IGS_094 igs rpl22|rps19 rpl22-rps19 81809 81892 0 84 IRb 0.013605 2 0 47 9 no 0.000000 2 0.000000 0.013605 1.000000 28.500000 rps19 gene rps19 rps19 81893 82174 -1 282 IRb 0.003040 3 0 40 208 no 0.285714 3 0.666667 0.003040 1.000000 29.800000 IGS_095 igs rps19|AU144_gp058 rps19-AU144_gp058 82175 82192 0 18 IRb 0.000000 0 0 53 190 no 0.000000 1 0.000000 NA 1.000000 22.700000 AU144_gp058 gene AU144_gp058 AU144_gp058 82193 82417 -1 225 IRb 0.002116 1 0 71 300 no 0.000000 2 0.000000 0.002116 1.000000 25.600000 trnH-GUG tRNA trnH-GUG trnH-GUG 82304 82378 1 75 IRb 0.000000 0 0 182 4 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_097 igs trnH-GUG|rpl2 trnH-GUG-rpl2 82379 82433 0 55 IRb 0.008658 1 0 257 300 no 0.000000 2 0.000000 0.008658 1.000000 39.900000 rpl2 gene rpl2 rpl2 82434 83918 -1 1485 IRb 0.000192 1 0 50 229 no 0.142857 2 0.500000 0.000192 1.000000 31.600000 AU144_gp056 gene AU144_gp056 AU144_gp056 82540 82953 1 414 IRb 0.000000 0 0 156 300 no 0.000000 1 0.000000 0.000000 1.000000 32.800000 IGS_099 igs AU144_gp056|rpl23 AU144_gp056-rpl23 82954 83936 0 983 IRb 0.000291 1 0 300 211 no 0.142857 2 0.500000 0.000291 1.000000 42.900000 rpl23 gene rpl23 rpl23 83937 84218 -1 282 IRb 0.002026 1 0 300 300 no 0.000000 2 0.000000 0.002026 1.000000 35.100000 IGS_100 igs rpl23|trnI-CAU rpl23-trnI-CAU 84219 84392 0 174 IRb 0.000000 0 0 70 300 no 0.000000 1 0.000000 0.000000 1.000000 24.000000 trnI-CAU tRNA trnI-CAU trnI-CAU 84393 84466 -1 74 IRb 0.000000 0 0 244 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_101 igs trnI-CAU|AU144_gp054 trnI-CAU-AU144_gp054 84467 84544 0 78 IRb 0.000000 0 4 300 300 no 0.142857 2 0.500000 0.000000 1.000000 42.400000 AU144_gp054 gene AU144_gp054 AU144_gp054 84545 84688 1 144 IRb 0.000000 0 30 300 289 no 0.142857 2 0.500000 0.000000 1.000000 41.700000 AU144_gp053 gene AU144_gp053 AU144_gp053 84670 84774 1 105 IRb 0.000000 0 0 300 203 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_103 igs AU144_gp053|AU144_gp052 AU144_gp053-AU144_gp052 84775 84858 0 84 IRb 0.000000 0 0 300 119 no 0.000000 1 0.000000 0.000000 1.000000 27.700000 AU144_gp052 gene AU144_gp052 AU144_gp052 84859 85596 1 738 IRb 0.001420 3 0 300 300 yes 0.428571 4 0.750000 0.001420 1.000000 49.200000 IGS_104 igs AU144_gp052|AU144_gp051 AU144_gp052-AU144_gp051 85597 85818 0 222 IRb 0.000000 0 0 300 159 no 0.000000 1 0.000000 0.000000 1.000000 30.700000 AU144_gp051 gene AU144_gp051 AU144_gp051 85819 86367 1 549 IRb 0.000520 1 0 300 300 no 0.142857 2 0.500000 0.000520 1.000000 42.100000 IGS_105 igs AU144_gp051|AU144_gp050 AU144_gp051-AU144_gp050 86368 86960 0 593 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 39.900000 AU144_gp050 gene AU144_gp050 AU144_gp050 86961 87068 1 108 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_106 igs AU144_gp050|AU144_gp049 AU144_gp050-AU144_gp049 87069 87094 0 26 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 AU144_gp049 gene AU144_gp049 AU144_gp049 87095 87265 1 171 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_107 igs AU144_gp049|AU144_gp048 AU144_gp049-AU144_gp048 87266 87325 0 60 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 AU144_gp048 gene AU144_gp048 AU144_gp048 87326 87847 1 522 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 38.400000 IGS_108 igs AU144_gp048|trnL-CAA AU144_gp048-trnL-CAA 87848 88034 0 187 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnL-CAA tRNA trnL-CAA trnL-CAA 88035 88115 -1 81 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_109 igs trnL-CAA|AU144_gp047 trnL-CAA-AU144_gp047 88116 88151 0 36 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 AU144_gp047 gene AU144_gp047 AU144_gp047 88152 88355 -1 204 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_110 igs AU144_gp047|ndhB AU144_gp047-ndhB 88356 88702 0 347 IRb 0.000000 0 22 300 300 no 0.000000 2 0.000000 0.000000 1.000000 40.400000 ndhB gene ndhB ndhB 88703 90947 -1 2245 IRb 0.000127 1 0 300 300 no 0.142857 2 0.500000 0.000127 1.000000 41.200000 IGS_111 igs ndhB|rps7 ndhB-rps7 90948 91246 0 299 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 91247 91717 -1 471 IRb 0.000000 0 0 300 168 no 0.000000 1 0.000000 0.000000 1.000000 34.900000 IGS_112 igs rps7|rps12 rps7-rps12 91718 91775 0 58 IRb 0.000000 0 0 300 110 no 0.000000 1 0.000000 0.000000 1.000000 27.000000 rps12_part3 gene rps12 rps12 91776 91804 -1 29 IRb 0.000000 0 0 300 81 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_113 igs rps12|rps12 rps12-rps12 91805 92344 0 540 IRb 0.000529 1 0 300 300 no 0.142857 2 0.500000 0.000529 1.000000 41.900000 rps12_part2 gene rps12 rps12 92345 92576 -1 232 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_114 igs rps12|AU144_gp044 rps12-AU144_gp044 92577 93434 0 858 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 AU144_gp044 gene AU144_gp044 AU144_gp044 93435 93626 -1 192 IRb 0.000000 0 0 300 193 no 0.000000 1 0.000000 0.000000 1.000000 33.200000 AU144_gp043 gene AU144_gp043 AU144_gp043 93568 93825 -1 258 IRb 0.001107 1 0 300 151 no 0.142857 2 0.500000 0.001107 1.000000 33.700000 AU144_gp042 gene AU144_gp042 AU144_gp042 93804 94061 -1 258 IRb 0.002215 2 0 300 94 no 0.142857 2 0.500000 0.002215 1.000000 30.400000 IGS_117 igs AU144_gp042|trnV-GAC AU144_gp042-trnV-GAC 94062 94303 0 242 IRb 0.001181 1 0 84 131 no 0.142857 2 0.500000 0.001181 1.000000 28.800000 trnV-GAC tRNA trnV-GAC trnV-GAC 94304 94375 1 72 IRb 0.000000 0 0 147 59 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 IGS_118 igs trnV-GAC|rrn16S trnV-GAC-rrn16S 94376 94605 0 230 IRb 0.001242 1 0 219 300 no 0.142857 2 0.500000 0.001242 1.000000 37.500000 rrn16S rRNA rrn16S rrn16S 94606 96096 1 1491 IRb 0.000000 0 0 170 284 no 0.000000 1 0.000000 0.000000 1.000000 37.800000 IGS_119 igs rrn16S|trnI-GAU rrn16S-trnI-GAU 96097 96399 0 303 IRb 0.005658 3 0 300 300 no 0.000000 2 0.000000 0.005658 1.000000 37.600000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 96400 96436 1 37 IRb 0.000000 0 0 16 300 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 ycf68 gene ycf68 ycf68 96541 96945 1 405 IRb 0.000000 0 0 157 300 no 0.000000 1 0.000000 0.000000 1.000000 32.700000 IGS_122 igs ycf68|trnI-GAU ycf68-trnI-GAU 96946 97387 0 442 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 36.700000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 97388 97422 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_123 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 97423 97487 0 65 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 97488 97525 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 AU144_gp040 gene AU144_gp040 AU144_gp040 97612 97785 -1 174 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_126 igs AU144_gp040|AU144_gp039 AU144_gp040-AU144_gp039 97786 98165 0 380 IRb 0.001253 1 0 300 280 no 0.000000 2 0.000000 0.001253 1.000000 36.300000 AU144_gp039 gene AU144_gp039 AU144_gp039 98166 98315 1 150 IRb 0.000000 0 0 74 130 no 0.000000 1 0.000000 0.000000 1.000000 24.300000 IGS_127 igs AU144_gp039|trnA-UGC AU144_gp039-trnA-UGC 98316 98335 0 20 IRb 0.000000 0 0 224 110 no 0.000000 1 0.000000 0.000000 1.000000 27.000000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 98336 98370 1 35 IRb 0.000000 0 0 244 75 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 IGS_128 igs trnA-UGC|rrn23 trnA-UGC-rrn23 98371 98515 0 145 IRb 0.003284 1 0 279 300 no 0.000000 2 0.000000 0.003284 1.000000 36.100000 rrn23 rRNA rrn23 rrn23 98516 101403 1 2888 IRb 0.000165 1 0 69 300 no 0.000000 2 0.000000 0.000165 1.000000 27.400000 IGS_129 igs rrn23|rrn4.5S rrn23-rrn4.5S 101404 101498 0 95 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 101499 101593 1 95 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_130 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 101594 101819 0 226 IRb 0.000000 0 0 300 147 no 0.000000 1 0.000000 0.000000 1.000000 29.800000 rrn5S rRNA rrn5S rrn5S 101820 101940 1 121 IRb 0.000000 0 0 300 26 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_131 igs rrn5S|trnR-ACG rrn5S-trnR-ACG 101941 102198 0 258 IRb 0.001107 1 0 300 300 no 0.142857 2 0.500000 0.001107 1.000000 37.400000 trnR-ACG tRNA trnR-ACG trnR-ACG 102199 102272 1 74 IRb 0.000000 0 0 231 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_132 igs trnR-ACG|AU144_gp038 trnR-ACG-AU144_gp038 102273 102325 0 53 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 AU144_gp038 gene AU144_gp038 AU144_gp038 102326 102397 1 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_133 igs AU144_gp038|trnN-GUU AU144_gp038-trnN-GUU 102398 102525 0 128 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnN-GUU tRNA trnN-GUU trnN-GUU 102526 102597 -1 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_134 igs trnN-GUU|ycf1 trnN-GUU-ycf1 102598 103550 0 953 IRb 0.000899 2 0 300 300 no 0.142857 3 0.333333 0.000899 1.000000 43.300000 ycf1 gene ycf1 ycf1 103551 103742 1 192 IRb 0.000000 0 0 105 300 no 0.000000 1 0.000000 0.000000 1.000000 26.600000 IGS_135 igs ycf1|rps15 ycf1-rps15 103743 104223 0 481 IRb 0.000594 1 0 297 300 no 0.142857 2 0.500000 0.000594 1.000000 40.700000 rps15 gene rps15 rps15 104224 104460 1 237 IRb 0.000000 0 0 97 117 no 0.000000 1 0.000000 0.000000 1.000000 26.000000 IGS_136 igs rps15|ndhF rps15-ndhF 104461 104566 0 106 IRb 0.000000 0 0 300 11 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 ndhF gene ndhF ndhF 104567 106783 -1 2217 SSC 0.001632 10 0 300 95 no 0.285714 3 0.666667 0.001632 1.000000 37.300000 IGS_137 igs ndhF|rpl32 ndhF-rpl32 106784 107574 0 791 SSC 0.003130 7 5 156 185 yes 0.428571 4 0.750000 0.003142 1.000000 48.000000 rpl32 gene rpl32 rpl32 107575 107766 1 192 SSC 0.001488 1 0 51 21 no 0.142857 2 0.500000 0.001488 1.000000 24.300000 IGS_138 igs rpl32|trnL-UAG rpl32-trnL-UAG 107767 108283 0 517 SSC 0.011053 14 0 6 198 yes 0.571429 5 0.800000 0.011053 1.000000 42.800000 trnL-UAG tRNA trnL-UAG trnL-UAG 108284 108363 1 80 SSC 0.000000 0 0 14 118 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_139 igs trnL-UAG|ccsA trnL-UAG-ccsA 108364 108440 0 77 SSC 0.000000 0 0 94 41 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 ccsA gene ccsA ccsA 108441 109409 1 969 SSC 0.002162 5 0 171 22 yes 0.428571 4 0.750000 0.002162 1.000000 36.300000 IGS_140 igs ccsA|ndhD ccsA-ndhD 109410 109609 0 200 SSC 0.018571 11 5 111 161 yes 0.428571 4 0.750000 0.018968 1.000000 53.300000 ndhD gene ndhD ndhD 109610 111112 -1 1503 SSC 0.000570 3 0 124 266 no 0.142857 2 0.500000 0.000570 1.000000 37.500000 IGS_141 igs ndhD|psaC ndhD-psaC 111113 111231 0 119 SSC 0.000000 0 0 59 147 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 psaC gene psaC psaC 111232 111477 -1 246 SSC 0.001161 1 0 178 15 no 0.142857 2 0.500000 0.001161 1.000000 23.600000 IGS_142 igs psaC|ndhE psaC-ndhE 111478 111952 0 475 SSC 0.002807 4 0 98 33 no 0.285714 3 0.666667 0.002807 1.000000 32.500000 ndhE gene ndhE ndhE 111953 112258 -1 306 SSC 0.003735 3 0 4 103 no 0.428571 4 0.750000 0.003735 1.000000 30.100000 IGS_143 igs ndhE|ndhG ndhE-ndhG 112259 112471 0 213 SSC 0.003577 2 5 221 300 no 0.428571 4 0.750000 0.003593 1.000000 47.400000 ndhG gene ndhG ndhG 112472 113002 -1 531 SSC 0.000000 0 0 41 19 no 0.000000 1 0.000000 0.000000 1.000000 25.000000 IGS_144 igs ndhG|ndhI ndhG-ndhI 113003 113187 0 185 SSC 0.004633 2 0 300 0 no 0.142857 3 0.333333 0.004633 1.000000 24.900000 ndhI gene ndhI ndhI 113188 113730 -1 543 SSC 0.001929 3 0 29 228 no 0.285714 3 0.666667 0.001929 1.000000 32.900000 IGS_145 igs ndhI|ndhA ndhI-ndhA 113731 113823 0 93 SSC 0.000000 0 0 149 135 no 0.000000 1 0.000000 0.000000 1.000000 28.900000 ndhA gene ndhA ndhA 113824 115930 -1 2107 SSC 0.002802 15 0 242 145 no 0.428571 4 0.750000 0.002802 1.000000 44.800000 IGS_146 igs ndhA|ndhH ndhA-ndhH 115931 115931 0 1 SSC 0.000000 0 0 99 144 no 0.000000 1 0.000000 NA 1.000000 26.200000 ndhH gene ndhH ndhH 115932 117113 -1 1182 SSC 0.001450 5 0 100 16 no 0.428571 4 0.750000 0.001450 1.000000 35.400000 IGS_147 igs ndhH|rps15 ndhH-rps15 117114 117247 0 134 IRa 0.003554 1 0 300 300 no 0.000000 2 0.000000 0.003554 1.000000 36.300000 rps15 gene rps15 rps15 117248 117484 -1 237 IRa 0.000000 0 0 117 97 no 0.000000 1 0.000000 0.000000 1.000000 26.000000 IGS_148 igs rps15|ycf1 rps15-ycf1 117485 117965 0 481 IRa 0.000594 1 0 300 297 no 0.142857 2 0.500000 0.000594 1.000000 40.700000 ycf1 gene ycf1 ycf1 117966 118157 -1 192 IRa 0.000000 0 0 300 105 no 0.000000 1 0.000000 0.000000 1.000000 26.600000 IGS_149 igs ycf1|trnN-GUU ycf1-trnN-GUU 118158 119110 0 953 IRa 0.000899 2 0 300 300 no 0.142857 3 0.333333 0.000899 1.000000 43.300000 trnN-GUU tRNA trnN-GUU trnN-GUU 119111 119182 1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_150 igs trnN-GUU|AU144_gp023 trnN-GUU-AU144_gp023 119183 119310 0 128 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 AU144_gp023 gene AU144_gp023 AU144_gp023 119311 119382 -1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_151 igs AU144_gp023|trnR-ACG AU144_gp023-trnR-ACG 119383 119435 0 53 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnR-ACG tRNA trnR-ACG trnR-ACG 119436 119509 -1 74 IRa 0.000000 0 0 300 231 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_152 igs trnR-ACG|rrn5S trnR-ACG-rrn5S 119510 119767 0 258 IRa 0.001107 1 0 300 300 no 0.142857 2 0.500000 0.001107 1.000000 37.400000 rrn5S rRNA rrn5S rrn5S 119768 119888 -1 121 IRa 0.000000 0 0 26 300 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_153 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 119889 120114 0 226 IRa 0.000000 0 0 147 300 no 0.000000 1 0.000000 0.000000 1.000000 29.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 120115 120209 -1 95 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_154 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 120210 120304 0 95 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 120305 123192 -1 2888 IRa 0.000165 1 0 300 69 no 0.000000 2 0.000000 0.000165 1.000000 27.400000 IGS_155 igs rrn23S|trnA-UGC rrn23S-trnA-UGC 123193 123337 0 145 IRa 0.003284 1 0 300 279 no 0.000000 2 0.000000 0.003284 1.000000 36.100000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 123338 123369 -1 32 IRa 0.000000 0 0 75 247 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 AU144_gp022 gene AU144_gp022 AU144_gp022 123393 123542 -1 150 IRa 0.000000 0 0 130 74 no 0.000000 1 0.000000 0.000000 1.000000 24.300000 IGS_158 igs AU144_gp022|AU144_gp021 AU144_gp022-AU144_gp021 123543 123922 0 380 IRa 0.001253 1 0 280 300 no 0.000000 2 0.000000 0.001253 1.000000 36.300000 AU144_gp021 gene AU144_gp021 AU144_gp021 123923 124096 1 174 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_159 igs AU144_gp021|trnA-UGC AU144_gp021-trnA-UGC 124097 124182 0 86 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 124183 124220 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_160 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 124221 124285 0 65 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 124286 124320 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf68 gene ycf68 ycf68 124763 125167 -1 405 IRa 0.000000 0 0 300 157 no 0.000000 1 0.000000 0.000000 1.000000 32.700000 IGS_163 igs ycf68|trnI-GAU ycf68-trnI-GAU 125168 125271 0 104 IRa 0.000000 0 0 300 53 no 0.000000 1 0.000000 0.000000 1.000000 22.700000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 125272 125308 -1 37 IRa 0.000000 0 0 300 16 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_164 igs trnI-GAU|rrn16S trnI-GAU-rrn16S 125309 125611 0 303 IRa 0.005658 3 0 300 300 no 0.000000 2 0.000000 0.005658 1.000000 37.600000 rrn16S rRNA rrn16S rrn16S 125612 127102 -1 1491 IRa 0.000000 0 0 284 170 no 0.000000 1 0.000000 0.000000 1.000000 37.800000 IGS_165 igs rrn16S|trnV-GAC rrn16S-trnV-GAC 127103 127332 0 230 IRa 0.001242 1 0 300 219 no 0.142857 2 0.500000 0.001242 1.000000 37.500000 trnV-GAC tRNA trnV-GAC trnV-GAC 127333 127404 -1 72 IRa 0.000000 0 0 59 147 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 IGS_166 igs trnV-GAC|AU144_gp019 trnV-GAC-AU144_gp019 127405 127646 0 242 IRa 0.001181 1 0 131 84 no 0.142857 2 0.500000 0.001181 1.000000 28.800000 AU144_gp019 gene AU144_gp019 AU144_gp019 127647 127904 1 258 IRa 0.002215 2 0 94 300 no 0.142857 2 0.500000 0.002215 1.000000 30.400000 AU144_gp018 gene AU144_gp018 AU144_gp018 127883 128140 1 258 IRa 0.001107 1 0 151 300 no 0.142857 2 0.500000 0.001107 1.000000 33.700000 AU144_gp017 gene AU144_gp017 AU144_gp017 128082 128273 1 192 IRa 0.000000 0 0 193 300 no 0.000000 1 0.000000 0.000000 1.000000 33.200000 IGS_169 igs AU144_gp017|rps12 AU144_gp017-rps12 128274 129131 0 858 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 rps12_part2 gene rps12 rps12 129132 129363 1 232 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_170 igs rps12|rps12 rps12-rps12 129364 129903 0 540 IRa 0.000529 1 0 300 300 no 0.142857 2 0.500000 0.000529 1.000000 41.900000 rps12_part3 gene rps12 rps12 129904 129932 1 29 IRa 0.000000 0 0 81 300 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_171 igs rps12|rps7 rps12-rps7 129933 129990 0 58 IRa 0.000000 0 0 110 300 no 0.000000 1 0.000000 0.000000 1.000000 27.000000 rps7 gene rps7 rps7 129991 130461 1 471 IRa 0.000000 0 0 168 300 no 0.000000 1 0.000000 0.000000 1.000000 34.900000 IGS_172 igs rps7|ndhB rps7-ndhB 130462 130760 0 299 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ndhB gene ndhB ndhB 130761 133005 1 2245 IRa 0.000127 1 0 300 300 no 0.142857 2 0.500000 0.000127 1.000000 41.200000 IGS_173 igs ndhB|AU144_gp014 ndhB-AU144_gp014 133006 133352 0 347 IRa 0.000000 0 22 300 300 no 0.000000 2 0.000000 0.000000 1.000000 40.400000 AU144_gp014 gene AU144_gp014 AU144_gp014 133353 133556 1 204 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_174 igs AU144_gp014|trnL-CAA AU144_gp014-trnL-CAA 133557 133592 0 36 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnL-CAA tRNA trnL-CAA trnL-CAA 133593 133673 1 81 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_175 igs trnL-CAA|AU144_gp013 trnL-CAA-AU144_gp013 133674 133860 0 187 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 AU144_gp013 gene AU144_gp013 AU144_gp013 133861 134382 -1 522 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 38.400000 IGS_176 igs AU144_gp013|AU144_gp012 AU144_gp013-AU144_gp012 134383 134442 0 60 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 AU144_gp012 gene AU144_gp012 AU144_gp012 134443 134613 -1 171 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_177 igs AU144_gp012|AU144_gp011 AU144_gp012-AU144_gp011 134614 134639 0 26 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 AU144_gp011 gene AU144_gp011 AU144_gp011 134640 134747 -1 108 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_178 igs AU144_gp011|AU144_gp010 AU144_gp011-AU144_gp010 134748 135340 0 593 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 39.900000 AU144_gp010 gene AU144_gp010 AU144_gp010 135341 135889 -1 549 IRa 0.000520 1 0 300 300 no 0.142857 2 0.500000 0.000520 1.000000 42.100000 IGS_179 igs AU144_gp010|AU144_gp009 AU144_gp010-AU144_gp009 135890 136111 0 222 IRa 0.000000 0 0 159 300 no 0.000000 1 0.000000 0.000000 1.000000 30.700000 AU144_gp009 gene AU144_gp009 AU144_gp009 136112 136849 -1 738 IRa 0.001420 3 0 300 300 yes 0.428571 4 0.750000 0.001420 1.000000 49.200000 IGS_180 igs AU144_gp009|AU144_gp008 AU144_gp009-AU144_gp008 136850 136933 0 84 IRa 0.000000 0 0 119 300 no 0.000000 1 0.000000 0.000000 1.000000 27.700000 AU144_gp008 gene AU144_gp008 AU144_gp008 136934 137038 -1 105 IRa 0.000000 0 0 203 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 AU144_gp007 gene AU144_gp007 AU144_gp007 137020 137163 -1 144 IRa 0.000000 0 34 289 300 no 0.142857 2 0.500000 0.000000 1.000000 41.600000 IGS_182 igs AU144_gp007|trnI-CAU AU144_gp007-trnI-CAU 137164 137241 0 78 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-CAU tRNA trnI-CAU trnI-CAU 137242 137315 1 74 IRa 0.000000 0 0 300 244 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_183 igs trnI-CAU|rpl23 trnI-CAU-rpl23 137316 137489 0 174 IRa 0.000000 0 0 300 70 no 0.000000 1 0.000000 0.000000 1.000000 24.000000 rpl23 gene rpl23 rpl23 137490 137771 1 282 IRa 0.002026 1 0 300 300 no 0.000000 2 0.000000 0.002026 1.000000 35.100000 IGS_184 igs rpl23|rpl2 rpl23-rpl2 137772 137789 0 18 IRa 0.000000 0 0 211 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 137790 139274 1 1485 IRa 0.000192 1 0 229 50 no 0.142857 2 0.500000 0.000192 1.000000 31.600000 AU144_gp004 gene AU144_gp004 AU144_gp004 138755 139168 -1 414 IRa 0.000000 0 0 300 156 no 0.000000 1 0.000000 0.000000 1.000000 32.800000 IGS_186 igs AU144_gp004|AU144_gp003 AU144_gp004-AU144_gp003 139169 139290 0 122 IRa 0.000000 0 0 300 34 no 0.000000 1 0.000000 0.000000 1.000000 21.300000 AU144_gp003 gene AU144_gp003 AU144_gp003 139291 139515 1 225 IRa 0.002116 1 0 300 71 no 0.000000 2 0.000000 0.002116 1.000000 25.600000 trnH-GUG tRNA trnH-GUG trnH-GUG 139330 139404 -1 75 IRa 0.000000 0 0 4 182 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_188 igs trnH-GUG|rps19 trnH-GUG-rps19 139405 139533 0 129 IRa 0.000000 0 0 79 53 no 0.000000 1 0.000000 0.000000 1.000000 22.700000 rps19 gene rps19 rps19 139534 139815 1 282 IRa 0.003040 3 0 208 38 no 0.285714 3 0.666667 0.003040 1.000000 29.700000 IGS_189 igs rps19|psbA rps19-psbA 139816 88 0 130 LSC 0.010989 3 9 9 300 no 0.714286 6 0.833333 0.011374 1.000000 46.400000