Hotspot

clpP

LSC · 72845-74931 · 2087 bp

Back to Dypsis

Pi 0.0047
MarkerSeek score 61.30
Primer available yes
Label clpP

Feature Metadata

label_name
clpP
feature_type
gene
region
LSC
length_bp
2087
variable_sites
22
pi
0.0047
unique_haplotype_count
5
primer_available
yes
alignment_reliability
1.00
markerseek_score
61.30

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID fwd_seq rev_seq fwd_gc rev_gc fwd_tm rev_tm amplicon_size cross_species_success_rate primer_score
clpP_p1 GGAATGGGTTGGTTTAGATCGA AACCCATTGTTACGTTTCCA 45.5 40.0 58.1 55.5 2253-2268 bp 1.0 43.8
clpP_p2 GGAATGGGTTGGTTTAGATCGA AAACCCATTGTTACGTTTCCA 45.5 38.1 58.1 56.3 2254-2269 bp 1.0 42.2
clpP_p3 GGAATGGGTTGGTTTAGATCG AACCCATTGTTACGTTTCCA 47.6 40.0 56.7 55.5 2253-2268 bp 1.0 42.1
clpP_p4 GGAATGGGTTGGTTTAGATCGA ACCCATTGTTACGTTTCCAT 45.5 40.0 58.1 55.2 2252-2267 bp 1.0 41.9
clpP_p5 TGGAATGGGTTGGTTTAGATCG AACCCATTGTTACGTTTCCA 45.5 40.0 58.4 55.5 2254-2269 bp 1.0 41.7