primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score psbX-rbcS_p1 psbX-rbcS 1 GCGATAAAATTTGCTAATGAAGTTGT CCCTGAAGGTAGCCGTTATT 26 20 30.8 50.0 57.8 57.0 0.0 0.0 7.175778 7545 7966 408-476 1.000000 52.0 psbX-rbcS_p2 psbX-rbcS 2 GCGATAAAATTTGCTAATGAAGTTGT CAGTGTTCAAGCTAACCCTGA 26 21 30.8 47.6 57.8 57.9 0.0 6.1 7.299322 7545 7966 423-491 1.000000 52.0 psbX-rbcS_p3 psbX-rbcS 3 GCGATAAAATTTGCTAATGAAGTTGT TGTTCAAGCTAACCCTGAAGG 26 21 30.8 47.6 57.8 57.9 0.0 0.0 7.313646 7545 7966 420-488 1.000000 52.0 psbX-rbcS_p4 psbX-rbcS 4 GCGATAAAATTTGCTAATGAAGTTGT ACAGTGTTCAAGCTAACCCTG 26 21 30.8 47.6 57.8 58.1 0.0 9.5 7.322126 7545 7966 424-492 1.000000 52.0 psbX-rbcS_p5 psbX-rbcS 5 GCGATAAAATTTGCTAATGAAGTTGT ACAGTGTTCAAGCTAACCCT 26 20 30.8 45.0 57.8 56.7 0.0 0.0 7.498487 7545 7966 424-492 1.000000 52.0 rpl1-rpl12_p1 rpl1-rpl12 1 TGCGAAAATTATCCCGACGT GCCATCATAATACCCCCACC 20 20 45.0 55.0 58.0 57.8 0.0 0.0 0.228879 26120 26199 903-909 0.666667 71.7 rpl1-rpl12_p2 rpl1-rpl12 2 TGCGAAAATTATCCCGACGT AACGACGATGCTGTACGATC 20 20 45.0 50.0 58.0 58.2 0.0 0.0 0.189108 26120 26199 1359-1359 0.333333 51.8 rpl1-rpl12_p3 rpl1-rpl12 3 TGCGAAAATTATCCCGACGT CGACGATGCTGTACGATCAA 20 20 45.0 50.0 58.0 58.2 0.0 0.0 0.190355 26120 26199 1357-1357 0.333333 51.8 rpl1-rpl12_p4 rpl1-rpl12 4 TGCGAAAATTATCCCGACGT GGCCATCATAATACCCCCAC 20 20 45.0 55.0 58.0 57.8 0.0 0.0 0.228879 26120 26199 910-910 0.333333 51.5 rpl1-rpl12_p5 rpl1-rpl12 5 CAATTGCGTACAACGGTGAC AACGACGATGCTGTACGATC 20 20 50.0 50.0 58.1 58.2 7.9 0.0 0.230964 26120 26199 1189-1189 0.333333 51.5 rpoB-rps20_p1 rpoB-rps20 1 ATAAGCGGCTCTCAGTAGGT CGTTGCGGATTATTTCGACG 20 20 50.0 50.0 57.9 58.0 1.4 0.0 0.088204 38200 38598 1542-1542 0.333333 52.6 rpoB-rps20_p2 rpoB-rps20 2 AAGCGGCTCTCAGTAGGTAA CGTTGCGGATTATTTCGACG 20 20 50.0 50.0 58.2 58.0 1.4 0.0 0.164823 38200 38598 1540-1540 0.333333 52.0 rpoB-rps20_p3 rpoB-rps20 3 AGCGGCTCTCAGTAGGTAAA CGTTGCGGATTATTTCGACG 20 20 50.0 50.0 58.2 58.0 0.0 0.0 0.164823 38200 38598 1539-1539 0.333333 52.0 rpoB-rps20_p4 rpoB-rps20 4 ATAAGCGGCTCTCAGTAGGT GCAGCGCTACTAAAAACTGC 20 20 50.0 50.0 57.9 58.1 1.4 11.0 0.191253 38200 38598 934-934 0.333333 51.8 rpoB-rps20_p5 rpoB-rps20 5 AGCGGCTCTCAGTAGGTAAA GCAGCGCTACTAAAAACTGC 20 20 50.0 50.0 58.2 58.1 0.0 11.0 0.267872 38200 38598 931-931 0.333333 51.2 petA-chlI_p1 petA-chlI 1 GGTGGCTTTGGTCAAGAAGA GCAAAAGCACATGCAGCATA 20 20 50.0 45.0 58.0 58.0 0.0 7.8 0.019695 43978 44652 1005-1005 0.333333 53.2 petA-chlI_p2 petA-chlI 2 GTAATCGTGGTCGTGGTCAA GCAAAAGCACATGCAGCATA 20 20 50.0 45.0 57.9 58.0 0.0 7.8 0.069789 43978 44652 1247-1247 0.333333 52.8 petA-chlI_p3 petA-chlI 3 GGTGGCTTTGGTCAAGAAGA TCCGGCTCGATTTGTATTGG 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.070639 43978 44652 1345-1345 0.333333 52.8 petA-chlI_p4 petA-chlI 4 TTGGTGCTGATGGTAAACCC GCAAAAGCACATGCAGCATA 20 20 50.0 45.0 58.1 58.0 0.0 7.8 0.083080 43978 44652 1523-1523 0.333333 52.7 petA-chlI_p5 petA-chlI 5 GTTGTTGCACCTGATCCAGA GCAAAAGCACATGCAGCATA 20 20 50.0 45.0 58.1 58.0 0.0 7.8 0.104732 43978 44652 1314-1314 0.333333 52.5 ftsH-trnT-UGU_p1 ftsH-trnT-UGU 1 CTTGTACGATGGCATTCCGA AACCCCCAACCTACGGATTA 20 20 50.0 50.0 58.1 58.0 14.5 0.0 0.095699 48403 48659 551-556 0.666667 74.8 ftsH-trnT-UGU_p2 ftsH-trnT-UGU 2 CTTGTACGATGGCATTCCGA CGACCTTGGGCTTATGAGTC 20 20 50.0 55.0 58.1 58.1 14.5 0.0 0.124086 48403 48659 1065-1163 0.666667 74.1 ftsH-trnT-UGU_p3 ftsH-trnT-UGU 3 CTGGGCTAGAAGCTTGTACG AACCCCCAACCTACGGATTA 20 20 55.0 50.0 58.1 58.0 2.1 0.0 0.102392 48403 48659 568-568 0.333333 52.5 ftsH-trnT-UGU_p4 ftsH-trnT-UGU 4 CTGGGCTAGAAGCTTGTACG CGACCTTGGGCTTATGAGTC 20 20 55.0 55.0 58.1 58.1 2.1 0.0 0.130780 48403 48659 1077-1077 0.333333 52.3 ftsH-trnT-UGU_p5 ftsH-trnT-UGU 5 GGAGATTGACCTGAACCACC AACCCCCAACCTACGGATTA 20 20 55.0 50.0 57.9 58.0 0.0 0.0 0.145630 48403 48659 797-797 0.333333 52.2 trnS-GCU-trnD-GUC_p1 trnS-GCU-trnD-GUC 1 AATGGCTGAGTGGTCGAAAG AGACTCGAACTCGCAACTTC 20 20 50.0 50.0 58.2 57.9 0.0 0.0 0.239769 49362 49432 216-218 1.000000 85.1 trnS-GCU-trnD-GUC_p2 trnS-GCU-trnD-GUC 2 AATGGCTGAGTGGTCGAAAG GAGACTCGAACTCGCAACTT 20 20 50.0 50.0 58.2 57.9 0.0 4.0 0.239769 49362 49432 217-219 1.000000 85.1 trnS-GCU-trnD-GUC_p3 trnS-GCU-trnD-GUC 3 GAAATGGCTGAGTGGTCGAA AGACTCGAACTCGCAACTTC 20 20 50.0 50.0 58.2 57.9 0.0 0.0 0.244871 49362 49432 218-220 1.000000 85.0 trnS-GCU-trnD-GUC_p4 trnS-GCU-trnD-GUC 4 GAAATGGCTGAGTGGTCGAA GAGACTCGAACTCGCAACTT 20 20 50.0 50.0 58.2 57.9 0.0 4.0 0.244871 49362 49432 219-221 1.000000 85.0 trnS-GCU-trnD-GUC_p5 trnS-GCU-trnD-GUC 5 GGAGAAATGGCTGAGTGGTC AGACTCGAACTCGCAACTTC 20 20 55.0 50.0 58.3 57.9 0.0 0.0 0.309286 49362 49432 221-223 1.000000 84.4 trnD-GUC-petN_p1 trnD-GUC-petN 1 AAGTTGCGAGTTCGAGTCTC GCCAGCCCAACCTAGACTTA 20 20 50.0 55.0 57.9 59.1 5.6 0.0 1.143659 49507 49700 234-254 1.000000 82.9 trnD-GUC-petN_p2 trnD-GUC-petN 2 GAAGTTGCGAGTTCGAGTCT GCCAGCCCAACCTAGACTTA 20 20 50.0 55.0 57.9 59.1 5.8 0.0 1.143659 49507 49700 235-255 1.000000 82.9 trnD-GUC-petN_p3 trnD-GUC-petN 3 GAGTTCGAGTCTCGTCAGTC GCCAGCCCAACCTAGACTTA 20 20 55.0 55.0 57.5 59.1 21.2 0.0 1.604341 49507 49700 227-247 1.000000 79.2 trnD-GUC-petN_p4 trnD-GUC-petN 4 TCAATTGGTTAGAGCACCGC GCCAGCCCAACCTAGACTTA 20 20 50.0 55.0 58.6 59.1 5.4 0.0 1.641392 49507 49700 267-287 1.000000 78.9 trnD-GUC-petN_p5 trnD-GUC-petN 5 AAGTTGCGAGTTCGAGTCTC ATTACGCCAGCCCAACCTA 20 19 50.0 52.6 57.9 58.7 5.6 0.0 1.750239 49507 49700 239-259 1.000000 78.0 psaJ-trnP-UGG_p1 psaJ-trnP-UGG 1 TGGTTGGATTGGATGGGTTG GGTAGAGTACCTGCTTTGGG 20 20 50.0 55.0 58.1 57.3 0.0 0.0 0.757467 64492 64627 556-561 1.000000 82.5 psaJ-trnP-UGG_p2 psaJ-trnP-UGG 2 TTGGATTGGATGGGTTGGAC GGTAGAGTACCTGCTTTGGG 20 20 50.0 55.0 57.8 57.3 0.0 0.0 0.923396 64492 64627 558-558 0.666667 65.6 psaJ-trnP-UGG_p3 psaJ-trnP-UGG 3 TGGATGACATTTACGGCAGG GGTAGAGTACCTGCTTTGGG 20 20 50.0 55.0 58.0 57.3 0.0 0.0 0.730224 64492 64627 267-267 0.333333 47.5 psaJ-trnP-UGG_p4 psaJ-trnP-UGG 4 ATGTAGTGAGTCTCCAGCGT GGTAGAGTACCTGCTTTGGG 20 20 50.0 55.0 58.2 57.3 0.0 0.0 0.852530 64492 64627 822-822 0.333333 46.5 psaJ-trnP-UGG_p5 psaJ-trnP-UGG 5 CTCCACCAGCTCTAGCCTTA GGTAGAGTACCTGCTTTGGG 20 20 55.0 55.0 58.2 57.3 0.0 0.0 0.911480 64492 64627 736-736 0.333333 46.0 trnP-UGG-ycf89_p1 trnP-UGG-ycf89 1 TGGATGACATTTACGGCAGG ACCCAATCTACGGCATCAAC 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.075344 64702 65407 1536-1536 0.333333 52.7 trnP-UGG-ycf89_p2 trnP-UGG-ycf89 2 TGGTTGGATTGGATGGGTTG ACCCAATCTACGGCATCAAC 20 20 50.0 50.0 58.1 58.0 0.0 0.0 0.102587 64702 65407 1830-1830 0.333333 52.5 trnP-UGG-ycf89_p3 trnP-UGG-ycf89 3 TGGATGACATTTACGGCAGG TTGTGCTTGATTTGGGGGAA 20 20 50.0 45.0 58.0 57.9 0.0 0.0 0.131058 64702 65407 1198-1198 0.333333 52.3 trnP-UGG-ycf89_p4 trnP-UGG-ycf89 4 AGGATTTGAACCTACGGCAC ACCCAATCTACGGCATCAAC 20 20 50.0 50.0 57.9 58.0 0.0 0.0 0.147812 64702 65407 1315-1315 0.333333 52.2 trnP-UGG-ycf89_p5 trnP-UGG-ycf89 5 TGGTTGGATTGGATGGGTTG TTGTGCTTGATTTGGGGGAA 20 20 50.0 45.0 58.1 57.9 0.0 0.0 0.158301 64702 65407 1492-1492 0.333333 52.1 ycf89-rns_p1 ycf89-rns 1 GTTGATGCCGTAGATTGGGT CATTGCGGAAAATTCCCCAC 20 20 50.0 50.0 58.0 58.0 0.0 6.6 0.047139 66371 66861 1282-1282 0.333333 53.0 ycf89-rns_p2 ycf89-rns 2 GTTGATGCCGTAGATTGGGT TCTCGTACGACTTGCATGTG 20 20 50.0 50.0 58.0 58.0 0.0 15.3 0.061199 66371 66861 1000-1000 0.333333 52.8 ycf89-rns_p3 ycf89-rns 3 GTTGATGCCGTAGATTGGGT TATTGCTCCGTCAGGCTTTC 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.062562 66371 66861 1305-1305 0.333333 52.8 ycf89-rns_p4 ycf89-rns 4 GTTGATGCCGTAGATTGGGT CAACCCATAGGCAGTCTTCC 20 20 50.0 55.0 58.0 58.0 0.0 0.0 0.082510 66371 66861 1334-1334 0.333333 52.7 ycf89-rns_p5 ycf89-rns 5 GTTGATGCCGTAGATTGGGT CTTGCATCCTCCGTCTTACC 20 20 50.0 55.0 58.0 58.1 0.0 0.0 0.097062 66371 66861 1433-1433 0.333333 52.6 ccsA_p1 ccsA 1 GCTGTTTCGCAACGTTTACA GACCAGTGGATGAAGTTGGA 20 20 45.0 50.0 57.9 57.1 0.0 18.4 0.953137 82159 83136 1618-1618 0.333333 45.7 ccsA_p2 ccsA 2 GCTGTTTCGCAACGTTTACA AGACCAGTGGATGAAGTTGG 20 20 45.0 50.0 57.9 57.1 0.0 18.4 0.961081 82159 83136 1619-1619 0.333333 45.6 ccsA_p3 ccsA 3 GCAACGTTTACACCCAACAC GACCAGTGGATGAAGTTGGA 20 20 50.0 50.0 58.2 57.1 0.0 18.4 1.029079 82159 83136 1610-1610 0.333333 45.1 ccsA_p4 ccsA 4 GCAACGTTTACACCCAACAC AGACCAGTGGATGAAGTTGG 20 20 50.0 50.0 58.2 57.1 0.0 18.4 1.037023 82159 83136 1611-1611 0.333333 45.0 ccsA_p5 ccsA 5 CAACCATCCCAAGGAACCAT GACCAGTGGATGAAGTTGGA 20 20 50.0 50.0 57.8 57.1 0.0 18.4 1.095654 82159 83136 1549-1549 0.333333 44.6 thiS-psb28_p1 thiS-psb28 1 TCACAACCCACTGCCTTAAC CTTTGACTCCGCCATTCGTA 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.028923 84755 85042 1061-1139 1.000000 91.8 thiS-psb28_p2 thiS-psb28 2 TCACAACCCACTGCCTTAAC TTTGACTCCGCCATTCGTAG 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.028923 84755 85042 1060-1138 1.000000 91.8 thiS-psb28_p3 thiS-psb28 3 GTGTTGACCAGGTCTAGCAG CTTTGACTCCGCCATTCGTA 20 20 55.0 50.0 57.9 58.0 20.8 0.0 0.090637 84755 85042 1266-1320 0.666667 77.9 thiS-psb28_p4 thiS-psb28 4 GTGTTGACCAGGTCTAGCAG TTTGACTCCGCCATTCGTAG 20 20 55.0 50.0 57.9 58.0 20.8 0.0 0.090637 84755 85042 1265-1319 0.666667 77.9 thiS-psb28_p5 thiS-psb28 5 TCACAACCCACTGCCTTAAC TGGAACGCTATGCCAAAAGT 20 20 50.0 45.0 58.0 58.1 0.0 0.0 0.120053 84755 85042 673-673 0.333333 52.4 trnQ-UUG-trnR-ACG_p1 trnQ-UUG-trnR-ACG 1 AAAGTCCACAGCCTTACCAC GGTTCGAATCCCTTCTTGCT 20 20 50.0 50.0 57.7 57.9 0.0 0.0 0.387287 85555 85618 113-122 1.000000 88.5 trnQ-UUG-trnR-ACG_p2 trnQ-UUG-trnR-ACG 2 CAAAGTCCACAGCCTTACCA GGTTCGAATCCCTTCTTGCT 20 20 50.0 50.0 57.7 57.9 0.0 0.0 0.385695 85555 85618 114-123 1.000000 88.4 trnQ-UUG-trnR-ACG_p3 trnQ-UUG-trnR-ACG 3 GAGTCAAAGTCCACAGCCTT GGTTCGAATCCCTTCTTGCT 20 20 50.0 50.0 57.7 57.9 0.0 0.0 0.377766 85555 85618 118-127 1.000000 88.3 trnQ-UUG-trnR-ACG_p4 trnQ-UUG-trnR-ACG 4 GAGTCAAAGTCCACAGCCTT GGGGTTCGAATCCCTTCTTG 20 20 50.0 55.0 57.7 58.2 0.0 35.1 0.510986 85555 85618 120-129 1.000000 87.1 trnQ-UUG-trnR-ACG_p5 trnQ-UUG-trnR-ACG 5 GTGGCAGGATTCGAACCTAC GGTTCGAATCCCTTCTTGCT 20 20 55.0 50.0 58.3 57.9 15.9 0.0 0.462191 85555 85618 146-155 1.000000 86.2 rpl6_p1 rpl6 1 CGTCGTAAACGTTGGTCACA TCATTACGGCGGGATGTTTT 20 20 50.0 45.0 58.8 57.9 0.0 13.2 0.918060 96939 97478 1527-1529 1.000000 79.3 rpl6_p2 rpl6 2 CGTCGTAAACGTTGGTCACA TTCATTACGGCGGGATGTTT 20 20 50.0 45.0 58.8 57.9 0.0 13.2 0.918060 96939 97478 1528-1530 1.000000 79.2 rpl6_p3 rpl6 3 CGTCGTAAACGTTGGTCACA TTTCATTACGGCGGGATGTT 20 20 50.0 45.0 58.8 57.9 0.0 13.2 0.918060 96939 97478 1529-1531 1.000000 79.2 rpl6_p4 rpl6 4 CGTCGTAAACGTTGGTCACA CCCCATAAGTCTGGAAGCAC 20 20 50.0 55.0 58.8 58.0 0.0 0.0 0.845356 96939 97478 1316-1318 0.666667 65.3 rpl6_p5 rpl6 5 CGTCGTAAACGTTGGTCACA AAATTGTAGGCCACCTGCTC 20 20 50.0 50.0 58.8 58.2 0.0 5.0 0.961810 96939 97478 1444-1444 0.333333 45.6 ccsA_p1 ccsA 1 CTCCCCAGGTAGGACTTGAA GCTGTTTCGCAACGTTTACA 20 20 55.0 45.0 58.0 57.9 0.0 0.0 0.141350 110525 111502 1966-1968 1.000000 87.0 ccsA_p2 ccsA 2 CTCCCCAGGTAGGACTTGAA GCAACGTTTACACCCAACAC 20 20 55.0 50.0 58.0 58.2 0.0 0.0 0.217292 110525 111502 1958-1960 1.000000 86.3 ccsA_p3 ccsA 3 AGGACTTGAACCTACGACCA GCTGTTTCGCAACGTTTACA 20 20 50.0 45.0 58.0 57.9 0.0 0.0 0.099342 110525 111502 1958-1958 0.333333 52.5 ccsA_p4 ccsA 4 AGGACTTGAACCTACGACCA GCAACGTTTACACCCAACAC 20 20 50.0 50.0 58.0 58.2 0.0 0.0 0.175284 110525 111502 1950-1950 0.333333 51.9 ccsA_p5 ccsA 5 AGGACTTGAACCTACGACCA CAACCATCCCAAGGAACCAT 20 20 50.0 50.0 58.0 57.8 0.0 0.0 0.241859 110525 111502 1889-1889 0.333333 51.4 rns-ycf89_p1 rns-ycf89 1 CATTGCGGAAAATTCCCCAC GTTGATGCCGTAGATTGGGT 20 20 50.0 50.0 58.0 58.0 6.6 0.0 0.047139 126800 127290 1282-1282 0.333333 53.0 rns-ycf89_p2 rns-ycf89 2 TCTCGTACGACTTGCATGTG GTTGATGCCGTAGATTGGGT 20 20 50.0 50.0 58.0 58.0 15.3 0.0 0.061199 126800 127290 1000-1000 0.333333 52.8 rns-ycf89_p3 rns-ycf89 3 TATTGCTCCGTCAGGCTTTC GTTGATGCCGTAGATTGGGT 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.062562 126800 127290 1305-1305 0.333333 52.8 rns-ycf89_p4 rns-ycf89 4 CAACCCATAGGCAGTCTTCC GTTGATGCCGTAGATTGGGT 20 20 55.0 50.0 58.0 58.0 0.0 0.0 0.082510 126800 127290 1334-1334 0.333333 52.7 rns-ycf89_p5 rns-ycf89 5 CTTGCATCCTCCGTCTTACC GTTGATGCCGTAGATTGGGT 20 20 55.0 50.0 58.1 58.0 0.0 0.0 0.097062 126800 127290 1433-1433 0.333333 52.6 ycf89-trnP-UGG_p1 ycf89-trnP-UGG 1 TGTGCTTGATTTGGGGGAAT AGGATTTGAACCTACGGCAC 20 20 45.0 50.0 57.7 57.9 0.0 0.0 0.433423 128254 128959 816-976 0.666667 75.2 ycf89-trnP-UGG_p2 ycf89-trnP-UGG 2 ACCCAATCTACGGCATCAAC AGGATTTGAACCTACGGCAC 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.147812 128254 128959 1315-1315 0.333333 52.2 ycf89-trnP-UGG_p3 ycf89-trnP-UGG 3 TTGTGCTTGATTTGGGGGAA AGGATTTGAACCTACGGCAC 20 20 45.0 50.0 57.9 57.9 0.0 0.0 0.203525 128254 128959 977-977 0.333333 51.7 ycf89-trnP-UGG_p4 ycf89-trnP-UGG 4 TGGCATTCCAGGAACATCTG AGGATTTGAACCTACGGCAC 20 20 50.0 50.0 57.9 57.9 3.2 0.0 0.242706 128254 128959 884-884 0.333333 51.4 ycf89-trnP-UGG_p5 ycf89-trnP-UGG 5 ATTGTGCTTGATTTGGGGGA AGGATTTGAACCTACGGCAC 20 20 45.0 50.0 57.7 57.9 0.0 0.0 0.433423 128254 128959 978-978 0.333333 49.9